RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 CLDN11O75508 207 aa2.82□□□□□ -1.96
SS18-214ENST00000580003 IL32P24001 234 aa2.82□□□□□ -1.96
SS18-214ENST00000580003 TAGLN2P37802 199 aaKnown RBP2.82□□□□□ -1.96
SS18-214ENST00000580003 KRTAP12-4P60329 112 aa2.82□□□□□ -1.96
SS18-214ENST00000580003 ART3Q13508 389 aa2.82□□□□□ -1.96
SS18-214ENST00000580003 DMC1Q14565 340 aa2.82□□□□□ -1.96
SS18-214ENST00000580003 SLC16A14Q7RTX9 510 aa2.82□□□□□ -1.96
SS18-214ENST00000580003 FAM228AQ86W67 206 aa2.82□□□□□ -1.96
SS18-214ENST00000580003 NUBPLQ8TB37 319 aa2.82□□□□□ -1.96
SS18-214ENST00000580003 OR51E1Q8TCB6 317 aa2.82□□□□□ -1.96
SS18-214ENST00000580003 SAMD10Q9BYL1 202 aa2.82□□□□□ -1.96
SS18-214ENST00000580003 SIGLEC7Q9Y286 467 aa2.82□□□□□ -1.96
SS18-214ENST00000580003 ATAD2BQ9ULI0 1458 aa2.82□□□□□ -1.96
SS18-214ENST00000580003 SMIM26A0A096LP01 95 aa2.81□□□□□ -1.96
SS18-214ENST00000580003 PDZK1P1A8MUH7 402 aa2.81□□□□□ -1.96
SS18-214ENST00000580003 PLPP1O14494 284 aa2.81□□□□□ -1.96
SS18-214ENST00000580003 EIF2S2P20042 333 aaKnown RBP2.81□□□□□ -1.96
SS18-214ENST00000580003 NCF4Q15080 339 aa2.81□□□□□ -1.96
SS18-214ENST00000580003 MAJINQ3KP22 176 aa2.81□□□□□ -1.96
SS18-214ENST00000580003 XKR7Q5GH72 579 aa2.81□□□□□ -1.96
SS18-214ENST00000580003 C1orf185Q5T7R7 199 aa2.81□□□□□ -1.96
SS18-214ENST00000580003 SNX31Q8N9S9 440 aa2.81□□□□□ -1.96
SS18-214ENST00000580003 OR4M1Q8NGD0 313 aa2.81□□□□□ -1.96
SS18-214ENST00000580003 OR4A4PQ8NGN8 299 aa2.81□□□□□ -1.96
SS18-214ENST00000580003 ACMSDQ8TDX5 336 aa2.81□□□□□ -1.96
SS18-214ENST00000580003 PDP1Q9P0J1 537 aaPredicted RBP2.81□□□□□ -1.96
SS18-214ENST00000580003 SEC16AO15027 2179 aa2.81□□□□□ -1.96
SS18-214ENST00000580003 TRIOBPQ9H2D6 2365 aa2.8□□□□□ -1.96
SS18-214ENST00000580003 A0A1B0GW55 424 aa2.8□□□□□ -1.96
SS18-214ENST00000580003 NCBP2LA6PVI3 153 aaKnown RBP2.8□□□□□ -1.96
SS18-214ENST00000580003 CEACAM18A8MTB9 384 aa2.8□□□□□ -1.96
SS18-214ENST00000580003 TNFRSF11BO00300 401 aa2.8□□□□□ -1.96
SS18-214ENST00000580003 NDUFAB1O14561 156 aa2.8□□□□□ -1.96
SS18-214ENST00000580003 SCAMP2O15127 329 aaKnown RBP2.8□□□□□ -1.96
SS18-214ENST00000580003 FLOT1O75955 427 aa2.8□□□□□ -1.96
SS18-214ENST00000580003 LHBP01229 141 aa2.8□□□□□ -1.96
SS18-214ENST00000580003 GLAP06280 429 aa2.8□□□□□ -1.96
SS18-214ENST00000580003 DUX4L2P0CJ85 424 aa2.8□□□□□ -1.96
SS18-214ENST00000580003 DUX4L3P0CJ86 424 aa2.8□□□□□ -1.96
SS18-214ENST00000580003 DUX4L5P0CJ88 424 aa2.8□□□□□ -1.96
SS18-214ENST00000580003 DUX4L6P0CJ89 424 aa2.8□□□□□ -1.96
SS18-214ENST00000580003 DUX4L7P0CJ90 424 aa2.8□□□□□ -1.96
SS18-214ENST00000580003 RAB10P61026 200 aa2.8□□□□□ -1.96
SS18-214ENST00000580003 SIGLEC14Q08ET2 396 aa2.8□□□□□ -1.96
SS18-214ENST00000580003 PNOCQ13519 176 aa2.8□□□□□ -1.96
SS18-214ENST00000580003 MAD2L1BPQ15013 274 aaPredicted RBP2.8□□□□□ -1.96
SS18-214ENST00000580003 C22orf42Q6IC83 251 aa2.8□□□□□ -1.96
SS18-214ENST00000580003 C12orf54Q6X4T0 127 aa2.8□□□□□ -1.96
SS18-214ENST00000580003 C16orf47Q6ZP98 133 aaPredicted RBP2.8□□□□□ -1.96
SS18-214ENST00000580003 ZNF664Q8N3J9 261 aa2.8□□□□□ -1.96
SS18-214ENST00000580003 CAPSLQ8WWF8 208 aa2.8□□□□□ -1.96
SS18-214ENST00000580003 TPD52L3Q96J77 140 aa2.8□□□□□ -1.96
SS18-214ENST00000580003 NEK6Q9HC98 313 aa2.8□□□□□ -1.96
SS18-214ENST00000580003 DUX4Q9UBX2 424 aa2.8□□□□□ -1.96
SS18-214ENST00000580003 SCN4AP35499 1836 aa2.79□□□□□ -1.96
SS18-214ENST00000580003 A0A1B0GUH1 482 aa2.79□□□□□ -1.96
SS18-214ENST00000580003 K7EMT4 169 aa2.79□□□□□ -1.96
SS18-214ENST00000580003 AQP8O94778 261 aa2.79□□□□□ -1.96
SS18-214ENST00000580003 MPV17P39210 176 aa2.79□□□□□ -1.96
SS18-214ENST00000580003 IDH2P48735 452 aaKnown RBP2.79□□□□□ -1.96
SS18-214ENST00000580003 UBE2E1P51965 193 aa2.79□□□□□ -1.96
SS18-214ENST00000580003 TAS2R46P59540 309 aa2.79□□□□□ -1.96
SS18-214ENST00000580003 SEMG2Q02383 582 aa2.79□□□□□ -1.96
SS18-214ENST00000580003 TRAM2Q15035 370 aa2.79□□□□□ -1.96
SS18-214ENST00000580003 CEP55Q53EZ4 464 aa2.79□□□□□ -1.96
SS18-214ENST00000580003 TPTE2P1Q5T6R2 138 aa2.79□□□□□ -1.96
SS18-214ENST00000580003 GPR26Q8NDV2 337 aa2.79□□□□□ -1.96
SS18-214ENST00000580003 CSNK1G1Q9HCP0 422 aa2.79□□□□□ -1.96
SS18-214ENST00000580003 TMCC3Q9ULS5 477 aa2.79□□□□□ -1.96
SS18-214ENST00000580003 A0A1W2PNN7 141 aa2.78□□□□□ -1.96
SS18-214ENST00000580003 OR6C70A6NIJ9 312 aa2.78□□□□□ -1.96
SS18-214ENST00000580003 IGLV6-57P01721 117 aa2.78□□□□□ -1.96
SS18-214ENST00000580003 UQCRFS1P1P0C7P4 283 aa2.78□□□□□ -1.96
SS18-214ENST00000580003 CHRNA6Q15825 494 aa2.78□□□□□ -1.96
SS18-214ENST00000580003 MRPL23Q16540 153 aaKnown RBP2.78□□□□□ -1.96
SS18-214ENST00000580003 PRSS54Q6PEW0 395 aa2.78□□□□□ -1.96
SS18-214ENST00000580003 TTC23LQ6PF05 361 aa2.78□□□□□ -1.96
SS18-214ENST00000580003 TMEM136Q6ZRR5 245 aa2.78□□□□□ -1.96
SS18-214ENST00000580003 ERO1BQ86YB8 467 aa2.78□□□□□ -1.96
SS18-214ENST00000580003 ZNF645Q8N7E2 425 aa2.78□□□□□ -1.96
SS18-214ENST00000580003 AKR7LQ8NHP1 331 aa2.78□□□□□ -1.96
SS18-214ENST00000580003 COL21A1Q96P44 957 aa2.78□□□□□ -1.96
SS18-214ENST00000580003 TMEM243Q9BU79 118 aa2.78□□□□□ -1.96
SS18-214ENST00000580003 PITPNC1Q9UKF7 332 aa2.78□□□□□ -1.96
SS18-214ENST00000580003 SDK2Q58EX2 2172 aa2.78□□□□□ -1.96
SS18-214ENST00000580003 H7C0C1 242 aa2.77□□□□□ -1.97
SS18-214ENST00000580003 H7C1H1 209 aa2.77□□□□□ -1.97
SS18-214ENST00000580003 TAAR5O14804 337 aa2.77□□□□□ -1.97
SS18-214ENST00000580003 ASGR1P07306 291 aa2.77□□□□□ -1.97
SS18-214ENST00000580003 ATP5OP48047 213 aa2.77□□□□□ -1.97
SS18-214ENST00000580003 ZNF235Q14590 738 aa2.77□□□□□ -1.97
SS18-214ENST00000580003 MED27Q6P2C8 311 aa2.77□□□□□ -1.97
SS18-214ENST00000580003 MDP1Q86V88 176 aa2.77□□□□□ -1.97
SS18-214ENST00000580003 SLC22A9Q8IVM8 553 aa2.77□□□□□ -1.97
SS18-214ENST00000580003 LYPD6BQ8NI32 183 aa2.77□□□□□ -1.97
SS18-214ENST00000580003 ZCCHC13Q8WW36 166 aaKnown RBP2.77□□□□□ -1.97
SS18-214ENST00000580003 ELMO1Q92556 727 aa2.77□□□□□ -1.97
SS18-214ENST00000580003 NRBF2Q96F24 287 aa2.77□□□□□ -1.97
SS18-214ENST00000580003 RNF145Q96MT1 663 aa2.77□□□□□ -1.97
SS18-214ENST00000580003 ZFP3Q96NJ6 502 aa2.77□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms