RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 KIR3DL2P43630 455 aa7.97□□□□□ -1.13
VPS35-211ENST00000569950 PRSS12P56730 875 aa7.97□□□□□ -1.13
VPS35-211ENST00000569950 ZNF121P58317 390 aaPredicted RBP7.97□□□□□ -1.13
VPS35-211ENST00000569950 GALK2Q01415 458 aa7.97□□□□□ -1.13
VPS35-211ENST00000569950 EGR3Q06889 387 aa7.97□□□□□ -1.13
VPS35-211ENST00000569950 SWI5Q1ZZU3 235 aa7.97□□□□□ -1.13
VPS35-211ENST00000569950 KLHL22Q53GT1 634 aa7.97□□□□□ -1.13
VPS35-211ENST00000569950 OR2G6Q5TZ20 316 aa7.97□□□□□ -1.13
VPS35-211ENST00000569950 LIPNQ5VXI9 398 aa7.97□□□□□ -1.13
VPS35-211ENST00000569950 FDX2Q6P4F2 183 aa7.97□□□□□ -1.13
VPS35-211ENST00000569950 SLC22A25Q6T423 547 aa7.97□□□□□ -1.13
VPS35-211ENST00000569950 AHSA2Q719I0 299 aa7.97□□□□□ -1.13
VPS35-211ENST00000569950 DTX2Q86UW9 622 aa7.97□□□□□ -1.13
VPS35-211ENST00000569950 PRSS35Q8N3Z0 413 aa7.97□□□□□ -1.13
VPS35-211ENST00000569950 OR8B12Q8NGG6 310 aa7.97□□□□□ -1.13
VPS35-211ENST00000569950 ASB17Q8WXJ9 295 aa7.97□□□□□ -1.13
VPS35-211ENST00000569950 AKAP1Q92667 903 aaKnown RBP eCLIP7.97□□□□□ -1.13
VPS35-211ENST00000569950 SPSB4Q96A44 273 aa7.97□□□□□ -1.13
VPS35-211ENST00000569950 LYZL4Q96KX0 146 aa7.97□□□□□ -1.13
VPS35-211ENST00000569950 DCLRE1CQ96SD1 692 aaKnown RBP7.97□□□□□ -1.13
VPS35-211ENST00000569950 COPS4Q9BT78 406 aa7.97□□□□□ -1.13
VPS35-211ENST00000569950 KRTAP3-3Q9BYR6 98 aa7.97□□□□□ -1.13
VPS35-211ENST00000569950 KRTAP3-2Q9BYR7 98 aa7.97□□□□□ -1.13
VPS35-211ENST00000569950 CLEC4MQ9H2X3 399 aaPredicted RBP7.97□□□□□ -1.13
VPS35-211ENST00000569950 OR51B6Q9H340 312 aa7.97□□□□□ -1.13
VPS35-211ENST00000569950 ACOXLQ9NUZ1 547 aa7.97□□□□□ -1.13
VPS35-211ENST00000569950 ERVK-18Q9QC07 812 aa7.97□□□□□ -1.13
VPS35-211ENST00000569950 GRIP1Q9Y3R0 1128 aa7.97□□□□□ -1.13
VPS35-211ENST00000569950 SIRT4Q9Y6E7 314 aaPredicted RBP7.97□□□□□ -1.13
VPS35-211ENST00000569950 TMEM14AQ9Y6G1 99 aa7.97□□□□□ -1.13
VPS35-211ENST00000569950 TANC2Q9HCD6 1990 aa7.97□□□□□ -1.13
VPS35-211ENST00000569950 A0A1B0GTI1 187 aa7.96□□□□□ -1.14
VPS35-211ENST00000569950 A0A1B0GWJ7 208 aa7.96□□□□□ -1.14
VPS35-211ENST00000569950 EFCAB10A6NFE3 127 aa7.96□□□□□ -1.14
VPS35-211ENST00000569950 METTL15A6NJ78 407 aa7.96□□□□□ -1.14
VPS35-211ENST00000569950 ZNF670-ZNF695F2Z2N8 137 aa7.96□□□□□ -1.14
VPS35-211ENST00000569950 J3QW42 95 aa7.96□□□□□ -1.14
VPS35-211ENST00000569950 ZNF254O75437 659 aa7.96□□□□□ -1.14
VPS35-211ENST00000569950 SULT1C4O75897 302 aa7.96□□□□□ -1.14
VPS35-211ENST00000569950 FADS2O95864 444 aaKnown RBP7.96□□□□□ -1.14
VPS35-211ENST00000569950 PTHP01270 115 aa7.96□□□□□ -1.14
VPS35-211ENST00000569950 TTRP02766 147 aa7.96□□□□□ -1.14
VPS35-211ENST00000569950 MT-ND2P03891 347 aa7.96□□□□□ -1.14
VPS35-211ENST00000569950 H2BFMP0C1H6 154 aa7.96□□□□□ -1.14
VPS35-211ENST00000569950 CCNOP22674 350 aa7.96□□□□□ -1.14
VPS35-211ENST00000569950 SSTR2P30874 369 aa7.96□□□□□ -1.14
VPS35-211ENST00000569950 PSMB10P40306 273 aa7.96□□□□□ -1.14
VPS35-211ENST00000569950 CX3CR1P49238 355 aa7.96□□□□□ -1.14
VPS35-211ENST00000569950 MMP16P51512 607 aa7.96□□□□□ -1.14
VPS35-211ENST00000569950 PPP1CBP62140 327 aa7.96□□□□□ -1.14
VPS35-211ENST00000569950 GRB2P62993 217 aaKnown RBP7.96□□□□□ -1.14
VPS35-211ENST00000569950 ACTC1P68032 377 aa7.96□□□□□ -1.14
VPS35-211ENST00000569950 ACTA1P68133 377 aa7.96□□□□□ -1.14
VPS35-211ENST00000569950 GK2Q14410 553 aaPredicted RBP7.96□□□□□ -1.14
VPS35-211ENST00000569950 HLXQ14774 488 aaPredicted RBP7.96□□□□□ -1.14
VPS35-211ENST00000569950 GLYATL3Q5SZD4 288 aa7.96□□□□□ -1.14
VPS35-211ENST00000569950 SPATA46Q5T0L3 261 aa7.96□□□□□ -1.14
VPS35-211ENST00000569950 RNLSQ5VYX0 342 aa7.96□□□□□ -1.14
VPS35-211ENST00000569950 DRAM2Q6UX65 266 aa7.96□□□□□ -1.14
VPS35-211ENST00000569950 Q6ZSR3 168 aa7.96□□□□□ -1.14
VPS35-211ENST00000569950 KRT77Q7Z794 578 aa7.96□□□□□ -1.14
VPS35-211ENST00000569950 CATSPERDQ86XM0 798 aa7.96□□□□□ -1.14
VPS35-211ENST00000569950 SYS1Q8N2H4 156 aa7.96□□□□□ -1.14
VPS35-211ENST00000569950 ZNF611Q8N823 705 aa7.96□□□□□ -1.14
VPS35-211ENST00000569950 OR1J2Q8NGS2 313 aa7.96□□□□□ -1.14
VPS35-211ENST00000569950 OR2AE1Q8NHA4 323 aa7.96□□□□□ -1.14
VPS35-211ENST00000569950 ABHD4Q8TB40 342 aa7.96□□□□□ -1.14
VPS35-211ENST00000569950 SLC25A40Q8TBP6 338 aa7.96□□□□□ -1.14
VPS35-211ENST00000569950 KLF14Q8TD94 323 aaPredicted RBP7.96□□□□□ -1.14
VPS35-211ENST00000569950 IPCEF1Q8WWN9 437 aaPredicted RBP7.96□□□□□ -1.14
VPS35-211ENST00000569950 GTF3AQ92664 365 aaKnown RBP7.96□□□□□ -1.14
VPS35-211ENST00000569950 MRPL24Q96A35 216 aaKnown RBP7.96□□□□□ -1.14
VPS35-211ENST00000569950 SGK3Q96BR1 496 aa7.96□□□□□ -1.14
VPS35-211ENST00000569950 TMEM80Q96HE8 168 aa7.96□□□□□ -1.14
VPS35-211ENST00000569950 RADILQ96JH8 1075 aa7.96□□□□□ -1.14
VPS35-211ENST00000569950 DHRS9Q9BPW9 319 aa7.96□□□□□ -1.14
VPS35-211ENST00000569950 ALG8Q9BVK2 526 aa7.96□□□□□ -1.14
VPS35-211ENST00000569950 CDCA4Q9BXL8 241 aa7.96□□□□□ -1.14
VPS35-211ENST00000569950 MRPL37Q9BZE1 423 aaKnown RBP7.96□□□□□ -1.14
VPS35-211ENST00000569950 OR2J1Q9GZK6 312 aa7.96□□□□□ -1.14
VPS35-211ENST00000569950 CDH20Q9HBT6 801 aa7.96□□□□□ -1.14
VPS35-211ENST00000569950 INPP5EQ9NRR6 644 aa7.96□□□□□ -1.14
VPS35-211ENST00000569950 CISD1Q9NZ45 108 aaKnown RBP7.96□□□□□ -1.14
VPS35-211ENST00000569950 ZNF469Q96JG9 3925 aaPredicted RBP7.95□□□□□ -1.14
VPS35-211ENST00000569950 FLNAP21333 2647 aaKnown RBP7.95□□□□□ -1.14
VPS35-211ENST00000569950 DAPL1A0PJW8 107 aa7.95□□□□□ -1.14
VPS35-211ENST00000569950 SNTNA6NMZ2 147 aa7.95□□□□□ -1.14
VPS35-211ENST00000569950 OR4C45A6NMZ5 311 aa7.95□□□□□ -1.14
VPS35-211ENST00000569950 OVOL3O00110 214 aa7.95□□□□□ -1.14
VPS35-211ENST00000569950 PHYHO14832 338 aa7.95□□□□□ -1.14
VPS35-211ENST00000569950 CD53P19397 219 aa7.95□□□□□ -1.14
VPS35-211ENST00000569950 TTKP33981 857 aa7.95□□□□□ -1.14
VPS35-211ENST00000569950 MMP15P51511 669 aa7.95□□□□□ -1.14
VPS35-211ENST00000569950 GTF2A1P52655 376 aaPredicted RBP7.95□□□□□ -1.14
VPS35-211ENST00000569950 TPTEP56180 551 aa7.95□□□□□ -1.14
VPS35-211ENST00000569950 CSNK2BP67870 215 aa7.95□□□□□ -1.14
VPS35-211ENST00000569950 ZNF92Q03936 586 aa7.95□□□□□ -1.14
VPS35-211ENST00000569950 PSG7Q13046 419 aa7.95□□□□□ -1.14
VPS35-211ENST00000569950 EFNB3Q15768 340 aa7.95□□□□□ -1.14
VPS35-211ENST00000569950 WDR38Q5JTN6 314 aa7.95□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms