RNA–Protein interactions for RNA: ENST00000567804.1

CLN3-228, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 557 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-228ENST00000567804 PRSS12P56730 875 aa12.46□□□□□ -0.41
CLN3-228ENST00000567804 KRTAP27-1Q3LI81 207 aa12.46□□□□□ -0.41
CLN3-228ENST00000567804 SMARCD3Q6STE5 483 aa12.46□□□□□ -0.41
CLN3-228ENST00000567804 SLC26A10Q8NG04 563 aa12.46□□□□□ -0.41
CLN3-228ENST00000567804 TAF15Q92804 592 aaKnown RBP eCLIP12.46□□□□□ -0.41
CLN3-228ENST00000567804 DHRS1Q96LJ7 313 aa12.46□□□□□ -0.41
CLN3-228ENST00000567804 ERMAPQ96PL5 475 aaPredicted RBP12.46□□□□□ -0.41
CLN3-228ENST00000567804 CDRT15Q96T59 188 aa12.46□□□□□ -0.41
CLN3-228ENST00000567804 FUZQ9BT04 418 aa12.46□□□□□ -0.41
CLN3-228ENST00000567804 HCAR1Q9BXC0 346 aa12.46□□□□□ -0.41
CLN3-228ENST00000567804 KRCC1Q9NPI7 259 aaPredicted RBP12.46□□□□□ -0.41
CLN3-228ENST00000567804 TMEM100Q9NV29 134 aa12.46□□□□□ -0.41
CLN3-228ENST00000567804 CD300AQ9UGN4 299 aa12.46□□□□□ -0.41
CLN3-228ENST00000567804 B9D1Q9UPM9 204 aa12.46□□□□□ -0.41
CLN3-228ENST00000567804 FAM32AQ9Y421 112 aaKnown RBP12.46□□□□□ -0.41
CLN3-228ENST00000567804 MDFIC2A0A1B0GVS7 189 aa12.45□□□□□ -0.42
CLN3-228ENST00000567804 DIRAS1O95057 198 aa12.45□□□□□ -0.42
CLN3-228ENST00000567804 ACSM4P0C7M7 580 aa12.45□□□□□ -0.42
CLN3-228ENST00000567804 FPR3P25089 353 aa12.45□□□□□ -0.42
CLN3-228ENST00000567804 DBPQ10586 325 aaPredicted RBP12.45□□□□□ -0.42
CLN3-228ENST00000567804 MAB21L1Q13394 359 aa12.45□□□□□ -0.42
CLN3-228ENST00000567804 GK2Q14410 553 aaPredicted RBP12.45□□□□□ -0.42
CLN3-228ENST00000567804 GLYATQ6IB77 296 aa12.45□□□□□ -0.42
CLN3-228ENST00000567804 SLC18B1Q6NT16 456 aa12.45□□□□□ -0.42
CLN3-228ENST00000567804 CFAP77Q6ZQR2 320 aa12.45□□□□□ -0.42
CLN3-228ENST00000567804 NLRC3Q7RTR2 1065 aa12.45□□□□□ -0.42
CLN3-228ENST00000567804 LINC00346Q8IVM7 164 aa12.45□□□□□ -0.42
CLN3-228ENST00000567804 DEFB107AQ8IZN7 70 aa12.45□□□□□ -0.42
CLN3-228ENST00000567804 OR6V1Q8N148 313 aa12.45□□□□□ -0.42
CLN3-228ENST00000567804 CELF2-AS1Q8N7Q2 184 aa12.45□□□□□ -0.42
CLN3-228ENST00000567804 FANK1Q8TC84 345 aa12.45□□□□□ -0.42
CLN3-228ENST00000567804 Q8TCH9 128 aa12.45□□□□□ -0.42
CLN3-228ENST00000567804 NSL1Q96IY1 281 aa12.45□□□□□ -0.42
CLN3-228ENST00000567804 NMNAT3Q96T66 252 aa12.45□□□□□ -0.42
CLN3-228ENST00000567804 NUDT16L1Q9BRJ7 211 aaKnown RBP12.45□□□□□ -0.42
CLN3-228ENST00000567804 SLITRK2Q9H156 845 aa12.45□□□□□ -0.42
CLN3-228ENST00000567804 SRA1Q9HD15 236 aaKnown RBP12.45□□□□□ -0.42
CLN3-228ENST00000567804 CLN8Q9UBY8 286 aa12.45□□□□□ -0.42
CLN3-228ENST00000567804 PHYHO14832 338 aa12.44□□□□□ -0.42
CLN3-228ENST00000567804 ARPC3O15145 178 aa12.44□□□□□ -0.42
CLN3-228ENST00000567804 HSD17B1P14061 328 aa12.44□□□□□ -0.42
CLN3-228ENST00000567804 IRF2P14316 349 aa12.44□□□□□ -0.42
CLN3-228ENST00000567804 MDKP21741 143 aaPredicted RBP12.44□□□□□ -0.42
CLN3-228ENST00000567804 CD200P41217 278 aa12.44□□□□□ -0.42
CLN3-228ENST00000567804 RAD23AP54725 363 aa12.44□□□□□ -0.42
CLN3-228ENST00000567804 MXRA7P84157 204 aa12.44□□□□□ -0.42
CLN3-228ENST00000567804 RFX4Q33E94 735 aa12.44□□□□□ -0.42
CLN3-228ENST00000567804 SAMD4BQ5PRF9 694 aaKnown RBP12.44□□□□□ -0.42
CLN3-228ENST00000567804 WDR25Q64LD2 544 aaPredicted RBP12.44□□□□□ -0.42
CLN3-228ENST00000567804 C16orf87Q6PH81 154 aa12.44□□□□□ -0.42
CLN3-228ENST00000567804 LYPD2Q6UXB3 125 aa12.44□□□□□ -0.42
CLN3-228ENST00000567804 TREML4Q6UXN2 200 aa12.44□□□□□ -0.42
CLN3-228ENST00000567804 BRD3OSQ6XYD6 125 aa12.44□□□□□ -0.42
CLN3-228ENST00000567804 DCDC5Q6ZRR9 648 aa12.44□□□□□ -0.42
CLN3-228ENST00000567804 SPATC1Q76KD6 591 aa12.44□□□□□ -0.42
CLN3-228ENST00000567804 OR10S1Q8NGN2 331 aa12.44□□□□□ -0.42
CLN3-228ENST00000567804 OR52J3Q8NH60 311 aa12.44□□□□□ -0.42
CLN3-228ENST00000567804 ERGIC1Q969X5 290 aa12.44□□□□□ -0.42
CLN3-228ENST00000567804 ATF6BQ99941 703 aa12.44□□□□□ -0.42
CLN3-228ENST00000567804 CDADC1Q9BWV3 514 aa12.44□□□□□ -0.42
CLN3-228ENST00000567804 OR52D1Q9H346 318 aa12.44□□□□□ -0.42
CLN3-228ENST00000567804 PRDM13Q9H4Q3 707 aa12.44□□□□□ -0.42
CLN3-228ENST00000567804 DCAF13Q9NV06 445 aaKnown RBP12.44□□□□□ -0.42
CLN3-228ENST00000567804 SAMD4AQ9UPU9 718 aaKnown RBP12.44□□□□□ -0.42
CLN3-228ENST00000567804 V9GYQ6 96 aa12.44□□□□□ -0.42
CLN3-228ENST00000567804 B2RBV5 119 aa12.43□□□□□ -0.42
CLN3-228ENST00000567804 F5H5K5 113 aa12.43□□□□□ -0.42
CLN3-228ENST00000567804 HOXA3O43365 443 aaPredicted RBP12.43□□□□□ -0.42
CLN3-228ENST00000567804 FAM20BO75063 409 aa12.43□□□□□ -0.42
CLN3-228ENST00000567804 RENP00797 406 aa12.43□□□□□ -0.42
CLN3-228ENST00000567804 HIST1H1CP16403 213 aaKnown RBP12.43□□□□□ -0.42
CLN3-228ENST00000567804 SLC6A6P31641 620 aa12.43□□□□□ -0.42
CLN3-228ENST00000567804 PSMB10P40306 273 aa12.43□□□□□ -0.42
CLN3-228ENST00000567804 FGF12P61328 243 aa12.43□□□□□ -0.42
CLN3-228ENST00000567804 TRAP1Q12931 704 aaKnown RBP12.43□□□□□ -0.42
CLN3-228ENST00000567804 ECH1Q13011 328 aa12.43□□□□□ -0.42
CLN3-228ENST00000567804 DEFB112Q30KQ8 113 aa12.43□□□□□ -0.42
CLN3-228ENST00000567804 SLC36A3Q495N2 470 aa12.43□□□□□ -0.42
CLN3-228ENST00000567804 CLEC12AQ5QGZ9 265 aa12.43□□□□□ -0.42
CLN3-228ENST00000567804 PRAMEF6Q5VXH4 476 aa12.43□□□□□ -0.42
CLN3-228ENST00000567804 C16orf89Q6UX73 402 aa12.43□□□□□ -0.42
CLN3-228ENST00000567804 ZNF841Q6ZN19 808 aa12.43□□□□□ -0.42
CLN3-228ENST00000567804 NAA40Q86UY6 237 aa12.43□□□□□ -0.42
CLN3-228ENST00000567804 ZBTB46Q86UZ6 589 aa12.43□□□□□ -0.42
CLN3-228ENST00000567804 C19orf18Q8NEA5 215 aa12.43□□□□□ -0.42
CLN3-228ENST00000567804 OR11L1Q8NGX0 322 aa12.43□□□□□ -0.42
CLN3-228ENST00000567804 OR4K13Q8NH42 304 aa12.43□□□□□ -0.42
CLN3-228ENST00000567804 BCAS4Q8TDM0 211 aa12.43□□□□□ -0.42
CLN3-228ENST00000567804 TMIGD2Q96BF3 282 aa12.43□□□□□ -0.42
CLN3-228ENST00000567804 PITX2Q99697 317 aa12.43□□□□□ -0.42
CLN3-228ENST00000567804 PNRC2Q9NPJ4 139 aaKnown RBP12.43□□□□□ -0.42
CLN3-228ENST00000567804 RPRD1BQ9NQG5 326 aaKnown RBP12.43□□□□□ -0.42
CLN3-228ENST00000567804 CYB5R1Q9UHQ9 305 aa12.43□□□□□ -0.42
CLN3-228ENST00000567804 MMP24Q9Y5R2 645 aa12.43□□□□□ -0.42
CLN3-228ENST00000567804 C22orf46C9J442 243 aa12.42□□□□□ -0.42
CLN3-228ENST00000567804 ARPC2O15144 300 aa12.42□□□□□ -0.42
CLN3-228ENST00000567804 LCATP04180 440 aa12.42□□□□□ -0.42
CLN3-228ENST00000567804 GGT2P36268 569 aa12.42□□□□□ -0.42
CLN3-228ENST00000567804 MALLQ13021 153 aa12.42□□□□□ -0.42
CLN3-228ENST00000567804 MPPED2Q15777 294 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms