RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 MS4A7Q9GZW8 240 aaPredicted RBP14.3□□□□□ -0.12
CLN3-216ENST00000565316 ZNF696Q9H7X3 374 aa14.3□□□□□ -0.12
CLN3-216ENST00000565316 PNRC2Q9NPJ4 139 aaKnown RBP14.3□□□□□ -0.12
CLN3-216ENST00000565316 IGHV3-64DA0A0J9YX35 117 aa14.29□□□□□ -0.12
CLN3-216ENST00000565316 OR6C68A6NDL8 312 aa14.29□□□□□ -0.12
CLN3-216ENST00000565316 GMNNO75496 209 aa14.29□□□□□ -0.12
CLN3-216ENST00000565316 GADD45GO95257 159 aa14.29□□□□□ -0.12
CLN3-216ENST00000565316 HLA-DPB1P04440 258 aa14.29□□□□□ -0.12
CLN3-216ENST00000565316 CD200P41217 278 aa14.29□□□□□ -0.12
CLN3-216ENST00000565316 MTNR1AP48039 350 aa14.29□□□□□ -0.12
CLN3-216ENST00000565316 GSSP48637 474 aa14.29□□□□□ -0.12
CLN3-216ENST00000565316 RAD23AP54725 363 aa14.29□□□□□ -0.12
CLN3-216ENST00000565316 DBPQ10586 325 aaPredicted RBP14.29□□□□□ -0.12
CLN3-216ENST00000565316 TRAP1Q12931 704 aaKnown RBP14.29□□□□□ -0.12
CLN3-216ENST00000565316 FAM201AQ5SY85 155 aa14.29□□□□□ -0.12
CLN3-216ENST00000565316 LINC00346Q8IVM7 164 aa14.29□□□□□ -0.12
CLN3-216ENST00000565316 OR8B3Q8NGG8 313 aa14.29□□□□□ -0.12
CLN3-216ENST00000565316 SLC25A28Q96A46 364 aa14.29□□□□□ -0.12
CLN3-216ENST00000565316 OR8B2Q96RD0 313 aa14.29□□□□□ -0.12
CLN3-216ENST00000565316 PITX2Q99697 317 aa14.29□□□□□ -0.12
CLN3-216ENST00000565316 ATF6BQ99941 703 aa14.29□□□□□ -0.12
CLN3-216ENST00000565316 IFT27Q9BW83 186 aa14.29□□□□□ -0.12
CLN3-216ENST00000565316 RPRD1BQ9NQG5 326 aaKnown RBP14.29□□□□□ -0.12
CLN3-216ENST00000565316 ADA2Q9NZK5 511 aa14.29□□□□□ -0.12
CLN3-216ENST00000565316 F5H5K5 113 aa14.28□□□□□ -0.12
CLN3-216ENST00000565316 PITPNBP48739 271 aa14.28□□□□□ -0.12
CLN3-216ENST00000565316 MALLQ13021 153 aa14.28□□□□□ -0.12
CLN3-216ENST00000565316 HSP90B2PQ58FF3 399 aa14.28□□□□□ -0.12
CLN3-216ENST00000565316 CLEC12AQ5QGZ9 265 aa14.28□□□□□ -0.12
CLN3-216ENST00000565316 ZNF841Q6ZN19 808 aa14.28□□□□□ -0.12
CLN3-216ENST00000565316 DCDC5Q6ZRR9 648 aa14.28□□□□□ -0.12
CLN3-216ENST00000565316 NLRC3Q7RTR2 1065 aa14.28□□□□□ -0.12
CLN3-216ENST00000565316 NAA40Q86UY6 237 aa14.28□□□□□ -0.12
CLN3-216ENST00000565316 FITM2Q8N6M3 262 aa14.28□□□□□ -0.12
CLN3-216ENST00000565316 RNF148Q8N7C7 305 aa14.28□□□□□ -0.12
CLN3-216ENST00000565316 PRDM13Q9H4Q3 707 aa14.28□□□□□ -0.12
CLN3-216ENST00000565316 MED4Q9NPJ6 270 aa14.28□□□□□ -0.12
CLN3-216ENST00000565316 MRPL22Q9NWU5 206 aaKnown RBP14.28□□□□□ -0.12
CLN3-216ENST00000565316 KCNG2Q9UJ96 466 aa14.28□□□□□ -0.12
CLN3-216ENST00000565316 SOX21Q9Y651 276 aaPredicted RBP14.28□□□□□ -0.12
CLN3-216ENST00000565316 IGHV3OR16-10A0A075B7F0 116 aa14.27□□□□□ -0.12
CLN3-216ENST00000565316 POM121CA8CG34 1229 aa14.27□□□□□ -0.12
CLN3-216ENST00000565316 PHYHO14832 338 aa14.27□□□□□ -0.12
CLN3-216ENST00000565316 OR10H3O60404 316 aa14.27□□□□□ -0.12
CLN3-216ENST00000565316 PTBP3O95758 552 aaKnown RBP14.27□□□□□ -0.12
CLN3-216ENST00000565316 LCATP04180 440 aa14.27□□□□□ -0.12
CLN3-216ENST00000565316 HSD17B1P14061 328 aa14.27□□□□□ -0.12
CLN3-216ENST00000565316 NOS3P29474 1203 aa14.27□□□□□ -0.12
CLN3-216ENST00000565316 IFNGR2P38484 337 aa14.27□□□□□ -0.12
CLN3-216ENST00000565316 PSMB10P40306 273 aa14.27□□□□□ -0.12
CLN3-216ENST00000565316 PRSS12P56730 875 aa14.27□□□□□ -0.12
CLN3-216ENST00000565316 IL13RA1P78552 427 aa14.27□□□□□ -0.12
CLN3-216ENST00000565316 SPIBQ01892 262 aa14.27□□□□□ -0.12
CLN3-216ENST00000565316 WDR25Q64LD2 544 aaPredicted RBP14.27□□□□□ -0.12
CLN3-216ENST00000565316 ZNF620Q6ZNG0 422 aa14.27□□□□□ -0.12
CLN3-216ENST00000565316 OR2AJ1Q8NGZ0 328 aa14.27□□□□□ -0.12
CLN3-216ENST00000565316 SLCO4A1Q96BD0 722 aa14.27□□□□□ -0.12
CLN3-216ENST00000565316 MAP6Q96JE9 813 aa14.27□□□□□ -0.12
CLN3-216ENST00000565316 DDOQ99489 341 aa14.27□□□□□ -0.12
CLN3-216ENST00000565316 NUDT16L1Q9BRJ7 211 aaKnown RBP14.27□□□□□ -0.12
CLN3-216ENST00000565316 CDADC1Q9BWV3 514 aa14.27□□□□□ -0.12
CLN3-216ENST00000565316 UNKLQ9H9P5 680 aaKnown RBP14.27□□□□□ -0.12
CLN3-216ENST00000565316 CLN8Q9UBY8 286 aa14.27□□□□□ -0.12
CLN3-216ENST00000565316 CD300AQ9UGN4 299 aa14.27□□□□□ -0.12
CLN3-216ENST00000565316 MAGEL2Q9UJ55 1249 aa14.27□□□□□ -0.12
CLN3-216ENST00000565316 V9GYQ6 96 aa14.27□□□□□ -0.12
CLN3-216ENST00000565316 FAM20BO75063 409 aa14.26□□□□□ -0.13
CLN3-216ENST00000565316 IRF2P14316 349 aa14.26□□□□□ -0.13
CLN3-216ENST00000565316 TPTEP56180 551 aa14.26□□□□□ -0.13
CLN3-216ENST00000565316 TSPAN31Q12999 210 aa14.26□□□□□ -0.13
CLN3-216ENST00000565316 LYPD2Q6UXB3 125 aa14.26□□□□□ -0.13
CLN3-216ENST00000565316 PGAP1Q75T13 922 aa14.26□□□□□ -0.13
CLN3-216ENST00000565316 SDR9C7Q8NEX9 313 aa14.26□□□□□ -0.13
CLN3-216ENST00000565316 OR10S1Q8NGN2 331 aa14.26□□□□□ -0.13
CLN3-216ENST00000565316 OR11L1Q8NGX0 322 aa14.26□□□□□ -0.13
CLN3-216ENST00000565316 ELAC2Q9BQ52 826 aaKnown RBP14.26□□□□□ -0.13
CLN3-216ENST00000565316 SLC22A4Q9H015 551 aa14.26□□□□□ -0.13
CLN3-216ENST00000565316 FN3KQ9H479 309 aa14.26□□□□□ -0.13
CLN3-216ENST00000565316 IL1RAPQ9NPH3 570 aa14.26□□□□□ -0.13
CLN3-216ENST00000565316 CMYA5Q8N3K9 4069 aa14.26□□□□□ -0.13
CLN3-216ENST00000565316 TRAV40A0A0B4J280 105 aa14.25□□□□□ -0.13
CLN3-216ENST00000565316 OTX1P32242 354 aaPredicted RBP14.25□□□□□ -0.13
CLN3-216ENST00000565316 KHDRBS1Q07666 443 aaKnown RBP eCLIP14.25□□□□□ -0.13
CLN3-216ENST00000565316 MPPED2Q15777 294 aa14.25□□□□□ -0.13
CLN3-216ENST00000565316 PGBD2Q6P3X8 592 aa14.25□□□□□ -0.13
CLN3-216ENST00000565316 PLPP7Q8NBV4 271 aa14.25□□□□□ -0.13
CLN3-216ENST00000565316 GNPDA2Q8TDQ7 276 aa14.25□□□□□ -0.13
CLN3-216ENST00000565316 SPRYD4Q8WW59 207 aaPredicted RBP14.25□□□□□ -0.13
CLN3-216ENST00000565316 MCUR1Q96AQ8 359 aa14.25□□□□□ -0.13
CLN3-216ENST00000565316 TMCC3Q9ULS5 477 aa14.25□□□□□ -0.13
CLN3-216ENST00000565316 NOP16Q9Y3C1 178 aaKnown RBP14.25□□□□□ -0.13
CLN3-216ENST00000565316 DOCK11Q5JSL3 2073 aa14.25□□□□□ -0.13
CLN3-216ENST00000565316 CD300LBA8K4G0 201 aa14.24□□□□□ -0.13
CLN3-216ENST00000565316 C22orf46C9J442 243 aa14.24□□□□□ -0.13
CLN3-216ENST00000565316 M0R135 149 aa14.24□□□□□ -0.13
CLN3-216ENST00000565316 TNFRSF13BO14836 293 aaPredicted RBP14.24□□□□□ -0.13
CLN3-216ENST00000565316 ARPC2O15144 300 aa14.24□□□□□ -0.13
CLN3-216ENST00000565316 GMDSO60547 372 aa14.24□□□□□ -0.13
CLN3-216ENST00000565316 HLA-DQA2P01906 255 aa14.24□□□□□ -0.13
CLN3-216ENST00000565316 FABP3P05413 133 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms