RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 FGF23Q9GZV9 251 aaPredicted RBP7.84□□□□□ -1.15
VPS35-206ENST00000565228 CENPMQ9NSP4 180 aa7.84□□□□□ -1.15
VPS35-206ENST00000565228 FAM118AQ9NWS6 357 aa7.84□□□□□ -1.15
VPS35-206ENST00000565228 ATPIF1Q9UII2 106 aa7.84□□□□□ -1.15
VPS35-206ENST00000565228 PURGQ9UJV8 347 aaKnown RBP7.84□□□□□ -1.15
VPS35-206ENST00000565228 SONP18583 2426 aaKnown RBP7.83□□□□□ -1.16
VPS35-206ENST00000565228 C17orf100A8MU93 164 aa7.83□□□□□ -1.16
VPS35-206ENST00000565228 J3QRE1 110 aa7.83□□□□□ -1.16
VPS35-206ENST00000565228 M0R135 149 aa7.83□□□□□ -1.16
VPS35-206ENST00000565228 M0R233 179 aa7.83□□□□□ -1.16
VPS35-206ENST00000565228 SMAD7O15105 426 aaKnown RBP7.83□□□□□ -1.16
VPS35-206ENST00000565228 MLNRO43193 412 aa7.83□□□□□ -1.16
VPS35-206ENST00000565228 WBP4O75554 376 aaKnown RBP7.83□□□□□ -1.16
VPS35-206ENST00000565228 RP2O75695 350 aa7.83□□□□□ -1.16
VPS35-206ENST00000565228 CD99P14209 185 aa7.83□□□□□ -1.16
VPS35-206ENST00000565228 PMELP40967 661 aa7.83□□□□□ -1.16
VPS35-206ENST00000565228 KLF3P57682 345 aaPredicted RBP7.83□□□□□ -1.16
VPS35-206ENST00000565228 ZNF85Q03923 595 aa7.83□□□□□ -1.16
VPS35-206ENST00000565228 MFGE8Q08431 387 aaPredicted RBP7.83□□□□□ -1.16
VPS35-206ENST00000565228 DOC2BQ14184 412 aa7.83□□□□□ -1.16
VPS35-206ENST00000565228 TRIP10Q15642 601 aa7.83□□□□□ -1.16
VPS35-206ENST00000565228 SMN1Q16637 294 aaKnown RBP7.83□□□□□ -1.16
VPS35-206ENST00000565228 SLC35D3Q5M8T2 416 aa7.83□□□□□ -1.16
VPS35-206ENST00000565228 ZNF684Q5T5D7 378 aa7.83□□□□□ -1.16
VPS35-206ENST00000565228 FBXW12Q6X9E4 464 aa7.83□□□□□ -1.16
VPS35-206ENST00000565228 ZBTB49Q6ZSB9 765 aa7.83□□□□□ -1.16
VPS35-206ENST00000565228 SLC16A9Q7RTY1 509 aa7.83□□□□□ -1.16
VPS35-206ENST00000565228 OR2AJ1Q8NGZ0 328 aa7.83□□□□□ -1.16
VPS35-206ENST00000565228 FAM81AQ8TBF8 368 aa7.83□□□□□ -1.16
VPS35-206ENST00000565228 DVL3Q92997 716 aaPredicted RBP7.83□□□□□ -1.16
VPS35-206ENST00000565228 SGK3Q96BR1 496 aa7.83□□□□□ -1.16
VPS35-206ENST00000565228 HAVCR1Q96D42 359 aa7.83□□□□□ -1.16
VPS35-206ENST00000565228 ZNF799Q96GE5 643 aa7.83□□□□□ -1.16
VPS35-206ENST00000565228 COX4I2Q96KJ9 171 aa7.83□□□□□ -1.16
VPS35-206ENST00000565228 KCNJ15Q99712 375 aa7.83□□□□□ -1.16
VPS35-206ENST00000565228 RHNO1Q9BSD3 238 aa7.83□□□□□ -1.16
VPS35-206ENST00000565228 C9orf16Q9BUW7 83 aa7.83□□□□□ -1.16
VPS35-206ENST00000565228 TREM2Q9NZC2 230 aa7.83□□□□□ -1.16
VPS35-206ENST00000565228 SPEF1Q9Y4P9 236 aa7.83□□□□□ -1.16
VPS35-206ENST00000565228 IGHV4-61A0A0C4DH41 118 aa7.82□□□□□ -1.16
VPS35-206ENST00000565228 IGHV3-64DA0A0J9YX35 117 aa7.82□□□□□ -1.16
VPS35-206ENST00000565228 A0A1B0GWJ7 208 aa7.82□□□□□ -1.16
VPS35-206ENST00000565228 A0A1W2PPW3 197 aa7.82□□□□□ -1.16
VPS35-206ENST00000565228 ZNF878C9JN71 531 aa7.82□□□□□ -1.16
VPS35-206ENST00000565228 SLC16A6O15403 523 aa7.82□□□□□ -1.16
VPS35-206ENST00000565228 SPRY3O43610 288 aa7.82□□□□□ -1.16
VPS35-206ENST00000565228 HLA-DPB1P04440 258 aa7.82□□□□□ -1.16
VPS35-206ENST00000565228 GNAO1P09471 354 aa7.82□□□□□ -1.16
VPS35-206ENST00000565228 SBK2P0C263 348 aa7.82□□□□□ -1.16
VPS35-206ENST00000565228 PAICSP22234 425 aaKnown RBP7.82□□□□□ -1.16
VPS35-206ENST00000565228 HTR1FP30939 366 aa7.82□□□□□ -1.16
VPS35-206ENST00000565228 IL2RGP31785 369 aa7.82□□□□□ -1.16
VPS35-206ENST00000565228 CX3CR1P49238 355 aa7.82□□□□□ -1.16
VPS35-206ENST00000565228 NUDT6P53370 316 aa7.82□□□□□ -1.16
VPS35-206ENST00000565228 ZNF121P58317 390 aaPredicted RBP7.82□□□□□ -1.16
VPS35-206ENST00000565228 RPS7P62081 194 aaKnown RBP7.82□□□□□ -1.16
VPS35-206ENST00000565228 ADARB1P78563 741 aaKnown RBP7.82□□□□□ -1.16
VPS35-206ENST00000565228 CCL8P80075 99 aa7.82□□□□□ -1.16
VPS35-206ENST00000565228 RIN1Q13671 783 aa7.82□□□□□ -1.16
VPS35-206ENST00000565228 TSTQ16762 297 aaKnown RBP7.82□□□□□ -1.16
VPS35-206ENST00000565228 ZNF718Q3SXZ3 478 aa7.82□□□□□ -1.16
VPS35-206ENST00000565228 Q71RC1 249 aaPredicted RBP7.82□□□□□ -1.16
VPS35-206ENST00000565228 OR51G2Q8NGK0 314 aa7.82□□□□□ -1.16
VPS35-206ENST00000565228 RHOXF1Q8NHV9 184 aa7.82□□□□□ -1.16
VPS35-206ENST00000565228 THEM6Q8WUY1 208 aa7.82□□□□□ -1.16
VPS35-206ENST00000565228 APOBEC3DQ96AK3 386 aaPredicted RBP7.82□□□□□ -1.16
VPS35-206ENST00000565228 TRMT61AQ96FX7 289 aaKnown RBP7.82□□□□□ -1.16
VPS35-206ENST00000565228 PLEKHA8Q96JA3 519 aa7.82□□□□□ -1.16
VPS35-206ENST00000565228 DCLRE1CQ96SD1 692 aaKnown RBP7.82□□□□□ -1.16
VPS35-206ENST00000565228 TBX5Q99593 518 aa7.82□□□□□ -1.16
VPS35-206ENST00000565228 APOL4Q9BPW4 351 aa7.82□□□□□ -1.16
VPS35-206ENST00000565228 COPS4Q9BT78 406 aa7.82□□□□□ -1.16
VPS35-206ENST00000565228 REPIN1Q9BWE0 567 aaKnown RBP7.82□□□□□ -1.16
VPS35-206ENST00000565228 BPESC1Q9GZL8 116 aa7.82□□□□□ -1.16
VPS35-206ENST00000565228 ELOVL3Q9HB03 270 aa7.82□□□□□ -1.16
VPS35-206ENST00000565228 DYNLRB1Q9NP97 96 aa7.82□□□□□ -1.16
VPS35-206ENST00000565228 FAM206AQ9NX38 181 aa7.82□□□□□ -1.16
VPS35-206ENST00000565228 HAO2Q9NYQ3 351 aa7.82□□□□□ -1.16
VPS35-206ENST00000565228 EIF3KQ9UBQ5 218 aaKnown RBP7.82□□□□□ -1.16
VPS35-206ENST00000565228 MRM2Q9UI43 246 aaKnown RBP7.82□□□□□ -1.16
VPS35-206ENST00000565228 LRP12Q9Y561 859 aa7.82□□□□□ -1.16
VPS35-206ENST00000565228 N6AMT1Q9Y5N5 214 aa7.82□□□□□ -1.16
VPS35-206ENST00000565228 PMF1-BGLAPU3KQ54 211 aa7.82□□□□□ -1.16
VPS35-206ENST00000565228 LOC100130705A0A1B0GUX0 176 aa7.81□□□□□ -1.16
VPS35-206ENST00000565228 A0A1W2PQL4 384 aaPredicted RBP7.81□□□□□ -1.16
VPS35-206ENST00000565228 LRP5LA4QPB2 252 aa7.81□□□□□ -1.16
VPS35-206ENST00000565228 IQCF6A8MYZ5 107 aa7.81□□□□□ -1.16
VPS35-206ENST00000565228 LY6G6DO95868 133 aa7.81□□□□□ -1.16
VPS35-206ENST00000565228 IGLV3-1P01715 115 aa7.81□□□□□ -1.16
VPS35-206ENST00000565228 LCATP04180 440 aa7.81□□□□□ -1.16
VPS35-206ENST00000565228 LYNP07948 512 aa7.81□□□□□ -1.16
VPS35-206ENST00000565228 DAOP14920 347 aa7.81□□□□□ -1.16
VPS35-206ENST00000565228 RAC2P15153 192 aa7.81□□□□□ -1.16
VPS35-206ENST00000565228 ACKR3P25106 362 aa7.81□□□□□ -1.16
VPS35-206ENST00000565228 CXCR4P61073 352 aa7.81□□□□□ -1.16
VPS35-206ENST00000565228 RPS23P62266 143 aaKnown RBP7.81□□□□□ -1.16
VPS35-206ENST00000565228 SNRPGP62308 76 aaKnown RBP7.81□□□□□ -1.16
VPS35-206ENST00000565228 FAM3AP98173 230 aa7.81□□□□□ -1.16
VPS35-206ENST00000565228 ROM1Q03395 351 aa7.81□□□□□ -1.16
VPS35-206ENST00000565228 MVKQ03426 396 aa7.81□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms