RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 RUSC1-AS1Q66K80 236 aa14.04□□□□□ -0.16
CLN3-211ENST00000564091 C8orf82Q6P1X6 216 aaPredicted RBP14.04□□□□□ -0.16
CLN3-211ENST00000564091 SMARCD3Q6STE5 483 aa14.04□□□□□ -0.16
CLN3-211ENST00000564091 ZNF841Q6ZN19 808 aa14.04□□□□□ -0.16
CLN3-211ENST00000564091 CFAP77Q6ZQR2 320 aa14.04□□□□□ -0.16
CLN3-211ENST00000564091 SLCO4A1Q96BD0 722 aa14.04□□□□□ -0.16
CLN3-211ENST00000564091 ERMAPQ96PL5 475 aaPredicted RBP14.04□□□□□ -0.16
CLN3-211ENST00000564091 NMNAT3Q96T66 252 aa14.04□□□□□ -0.16
CLN3-211ENST00000564091 HOPXQ9BPY8 73 aaPredicted RBP14.04□□□□□ -0.16
CLN3-211ENST00000564091 TMCC3Q9ULS5 477 aa14.04□□□□□ -0.16
CLN3-211ENST00000564091 FAM20BO75063 409 aa14.03□□□□□ -0.16
CLN3-211ENST00000564091 LCATP04180 440 aa14.03□□□□□ -0.16
CLN3-211ENST00000564091 H2AFXP16104 143 aaPredicted RBP14.03□□□□□ -0.16
CLN3-211ENST00000564091 RHCEP18577 417 aa14.03□□□□□ -0.16
CLN3-211ENST00000564091 GATA4P43694 442 aa14.03□□□□□ -0.16
CLN3-211ENST00000564091 MPPED2Q15777 294 aa14.03□□□□□ -0.16
CLN3-211ENST00000564091 MIDNQ504T8 468 aa14.03□□□□□ -0.16
CLN3-211ENST00000564091 CLEC12AQ5QGZ9 265 aa14.03□□□□□ -0.16
CLN3-211ENST00000564091 GPR157Q5UAW9 335 aa14.03□□□□□ -0.16
CLN3-211ENST00000564091 SLC18B1Q6NT16 456 aa14.03□□□□□ -0.16
CLN3-211ENST00000564091 PGM2L1Q6PCE3 622 aa14.03□□□□□ -0.16
CLN3-211ENST00000564091 DNM1P34Q6PK57 102 aa14.03□□□□□ -0.16
CLN3-211ENST00000564091 DCDC5Q6ZRR9 648 aa14.03□□□□□ -0.16
CLN3-211ENST00000564091 KIR3DL3Q8N743 410 aa14.03□□□□□ -0.16
CLN3-211ENST00000564091 SLC26A10Q8NG04 563 aa14.03□□□□□ -0.16
CLN3-211ENST00000564091 OR4K13Q8NH42 304 aa14.03□□□□□ -0.16
CLN3-211ENST00000564091 PITX2Q99697 317 aa14.03□□□□□ -0.16
CLN3-211ENST00000564091 KCTD14Q9BQ13 255 aaPredicted RBP14.03□□□□□ -0.16
CLN3-211ENST00000564091 PCGF1Q9BSM1 259 aa14.03□□□□□ -0.16
CLN3-211ENST00000564091 PRDM13Q9H4Q3 707 aa14.03□□□□□ -0.16
CLN3-211ENST00000564091 MARCH7Q9H992 704 aa14.03□□□□□ -0.16
CLN3-211ENST00000564091 TANC2Q9HCD6 1990 aa14.03□□□□□ -0.16
CLN3-211ENST00000564091 SRRM5B3KS81 715 aa14.02□□□□□ -0.17
CLN3-211ENST00000564091 PHYHO14832 338 aa14.02□□□□□ -0.17
CLN3-211ENST00000564091 SFTPBP07988 381 aa14.02□□□□□ -0.17
CLN3-211ENST00000564091 PSMB10P40306 273 aa14.02□□□□□ -0.17
CLN3-211ENST00000564091 RAD23AP54725 363 aa14.02□□□□□ -0.17
CLN3-211ENST00000564091 RELBQ01201 579 aa14.02□□□□□ -0.17
CLN3-211ENST00000564091 RFX4Q33E94 735 aa14.02□□□□□ -0.17
CLN3-211ENST00000564091 SFRP4Q6FHJ7 346 aaPredicted RBP14.02□□□□□ -0.17
CLN3-211ENST00000564091 FIP1L1Q6UN15 594 aaKnown RBP14.02□□□□□ -0.17
CLN3-211ENST00000564091 FAM86B1Q8N7N1 296 aa14.02□□□□□ -0.17
CLN3-211ENST00000564091 BOLLQ8N9W6 283 aaKnown RBP14.02□□□□□ -0.17
CLN3-211ENST00000564091 OR11L1Q8NGX0 322 aa14.02□□□□□ -0.17
CLN3-211ENST00000564091 FANK1Q8TC84 345 aa14.02□□□□□ -0.17
CLN3-211ENST00000564091 Q8TCH9 128 aa14.02□□□□□ -0.17
CLN3-211ENST00000564091 SPRYD4Q8WW59 207 aaPredicted RBP14.02□□□□□ -0.17
CLN3-211ENST00000564091 C7orf34Q96L11 122 aa14.02□□□□□ -0.17
CLN3-211ENST00000564091 FUZQ9BT04 418 aa14.02□□□□□ -0.17
CLN3-211ENST00000564091 CHIAQ9BZP6 476 aa14.02□□□□□ -0.17
CLN3-211ENST00000564091 RPRD1BQ9NQG5 326 aaKnown RBP14.02□□□□□ -0.17
CLN3-211ENST00000564091 ARGLU1Q9NWB6 273 aaPredicted RBP14.02□□□□□ -0.17
CLN3-211ENST00000564091 MMP24Q9Y5R2 645 aa14.02□□□□□ -0.17
CLN3-211ENST00000564091 NOTCH1P46531 2555 aa14.01□□□□□ -0.17
CLN3-211ENST00000564091 ENSAO43768 121 aaKnown RBP14.01□□□□□ -0.17
CLN3-211ENST00000564091 RENP00797 406 aa14.01□□□□□ -0.17
CLN3-211ENST00000564091 KNG1P01042 644 aa14.01□□□□□ -0.17
CLN3-211ENST00000564091 CRYBA1P05813 215 aa14.01□□□□□ -0.17
CLN3-211ENST00000564091 HIST1H1CP16403 213 aaKnown RBP14.01□□□□□ -0.17
CLN3-211ENST00000564091 CA6P23280 308 aa14.01□□□□□ -0.17
CLN3-211ENST00000564091 GGT2P36268 569 aa14.01□□□□□ -0.17
CLN3-211ENST00000564091 CD200P41217 278 aa14.01□□□□□ -0.17
CLN3-211ENST00000564091 RAG2P55895 527 aa14.01□□□□□ -0.17
CLN3-211ENST00000564091 TRAP1Q12931 704 aaKnown RBP14.01□□□□□ -0.17
CLN3-211ENST00000564091 MALLQ13021 153 aa14.01□□□□□ -0.17
CLN3-211ENST00000564091 Q6YL49 198 aa14.01□□□□□ -0.17
CLN3-211ENST00000564091 PGAP1Q75T13 922 aa14.01□□□□□ -0.17
CLN3-211ENST00000564091 CELF2-AS1Q8N7Q2 184 aa14.01□□□□□ -0.17
CLN3-211ENST00000564091 OR2AJ1Q8NGZ0 328 aa14.01□□□□□ -0.17
CLN3-211ENST00000564091 ERGIC1Q969X5 290 aa14.01□□□□□ -0.17
CLN3-211ENST00000564091 TECTBQ96PL2 329 aa14.01□□□□□ -0.17
CLN3-211ENST00000564091 ATF6BQ99941 703 aa14.01□□□□□ -0.17
CLN3-211ENST00000564091 MMADHCQ9H3L0 296 aaPredicted RBP14.01□□□□□ -0.17
CLN3-211ENST00000564091 FN3KQ9H479 309 aa14.01□□□□□ -0.17
CLN3-211ENST00000564091 EFCAB1Q9HAE3 211 aa14.01□□□□□ -0.17
CLN3-211ENST00000564091 KRCC1Q9NPI7 259 aaPredicted RBP14.01□□□□□ -0.17
CLN3-211ENST00000564091 PNRC2Q9NPJ4 139 aaKnown RBP14.01□□□□□ -0.17
CLN3-211ENST00000564091 PDP1Q9P0J1 537 aaPredicted RBP14.01□□□□□ -0.17
CLN3-211ENST00000564091 CTSZQ9UBR2 303 aa14.01□□□□□ -0.17
CLN3-211ENST00000564091 VWFP04275 2813 aa14□□□□□ -0.17
CLN3-211ENST00000564091 C3orf80F5H4A9 247 aa14□□□□□ -0.17
CLN3-211ENST00000564091 HLA-DQA2P01906 255 aa14□□□□□ -0.17
CLN3-211ENST00000564091 ANOS1P23352 680 aa14□□□□□ -0.17
CLN3-211ENST00000564091 CFHR2P36980 270 aa14□□□□□ -0.17
CLN3-211ENST00000564091 NUDT2P50583 147 aa14□□□□□ -0.17
CLN3-211ENST00000564091 ECH1Q13011 328 aa14□□□□□ -0.17
CLN3-211ENST00000564091 OR8G1Q15617 311 aa14□□□□□ -0.17
CLN3-211ENST00000564091 GLYATQ6IB77 296 aa14□□□□□ -0.17
CLN3-211ENST00000564091 C17orf107Q6ZR85 190 aa14□□□□□ -0.17
CLN3-211ENST00000564091 MRPL21Q7Z2W9 205 aaKnown RBP14□□□□□ -0.17
CLN3-211ENST00000564091 OR4F5Q8NH21 305 aa14□□□□□ -0.17
CLN3-211ENST00000564091 WFDC12Q8WWY7 111 aa14□□□□□ -0.17
CLN3-211ENST00000564091 DHRS1Q96LJ7 313 aa14□□□□□ -0.17
CLN3-211ENST00000564091 TBX15Q96SF7 602 aa14□□□□□ -0.17
CLN3-211ENST00000564091 IFT27Q9BW83 186 aa14□□□□□ -0.17
CLN3-211ENST00000564091 RASSF4Q9H2L5 321 aa14□□□□□ -0.17
CLN3-211ENST00000564091 OR52D1Q9H346 318 aa14□□□□□ -0.17
CLN3-211ENST00000564091 BEX1Q9HBH7 125 aa14□□□□□ -0.17
CLN3-211ENST00000564091 NOX4Q9NPH5 578 aa14□□□□□ -0.17
CLN3-211ENST00000564091 C1RLQ9NZP8 487 aa14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms