RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 DCTN3O75935 186 aa8.57□□□□□ -1.04
LDLR-214ENST00000560628 KRT36O76013 467 aa8.57□□□□□ -1.04
LDLR-214ENST00000560628 ZNF12P17014 697 aa8.57□□□□□ -1.04
LDLR-214ENST00000560628 ATP6V1B2P21281 511 aa8.57□□□□□ -1.04
LDLR-214ENST00000560628 CD80P33681 288 aa8.57□□□□□ -1.04
LDLR-214ENST00000560628 HMGA2P52926 109 aa8.57□□□□□ -1.04
LDLR-214ENST00000560628 TPTEP56180 551 aa8.57□□□□□ -1.04
LDLR-214ENST00000560628 ECH1Q13011 328 aa8.57□□□□□ -1.04
LDLR-214ENST00000560628 MALLQ13021 153 aa8.57□□□□□ -1.04
LDLR-214ENST00000560628 GK2Q14410 553 aaPredicted RBP8.57□□□□□ -1.04
LDLR-214ENST00000560628 ARMCX4Q5H9R4 360 aa8.57□□□□□ -1.04
LDLR-214ENST00000560628 KLF17Q5JT82 389 aaPredicted RBP8.57□□□□□ -1.04
LDLR-214ENST00000560628 ZNF362Q5T0B9 420 aaPredicted RBP8.57□□□□□ -1.04
LDLR-214ENST00000560628 SIGLECL1Q8N7X8 197 aa8.57□□□□□ -1.04
LDLR-214ENST00000560628 C3orf56Q8N813 242 aa8.57□□□□□ -1.04
LDLR-214ENST00000560628 C19orf18Q8NEA5 215 aa8.57□□□□□ -1.04
LDLR-214ENST00000560628 PROKR2Q8NFJ6 384 aa8.57□□□□□ -1.04
LDLR-214ENST00000560628 OR52L1Q8NGH7 329 aa8.57□□□□□ -1.04
LDLR-214ENST00000560628 OR4C15Q8NGM1 316 aa8.57□□□□□ -1.04
LDLR-214ENST00000560628 OR8D4Q8NGM9 314 aa8.57□□□□□ -1.04
LDLR-214ENST00000560628 OR9Q1Q8NGQ5 310 aa8.57□□□□□ -1.04
LDLR-214ENST00000560628 SPRYD4Q8WW59 207 aaPredicted RBP8.57□□□□□ -1.04
LDLR-214ENST00000560628 DUX5Q96PT3 197 aa8.57□□□□□ -1.04
LDLR-214ENST00000560628 DDOQ99489 341 aa8.57□□□□□ -1.04
LDLR-214ENST00000560628 TMEM246Q9BRR3 403 aa8.57□□□□□ -1.04
LDLR-214ENST00000560628 BTBD10Q9BSF8 475 aa8.57□□□□□ -1.04
LDLR-214ENST00000560628 MRI1Q9BV20 369 aa8.57□□□□□ -1.04
LDLR-214ENST00000560628 RBM4Q9BWF3 364 aaKnown RBP8.57□□□□□ -1.04
LDLR-214ENST00000560628 PLA2G12AQ9BZM1 189 aa8.57□□□□□ -1.04
LDLR-214ENST00000560628 UFSP2Q9NUQ7 469 aa8.57□□□□□ -1.04
LDLR-214ENST00000560628 ZNF69Q9UC07 566 aa8.57□□□□□ -1.04
LDLR-214ENST00000560628 OR5V1Q9UGF6 321 aa8.57□□□□□ -1.04
LDLR-214ENST00000560628 NUP50Q9UKX7 468 aa8.57□□□□□ -1.04
LDLR-214ENST00000560628 POLR3KQ9Y2Y1 108 aaPredicted RBP8.57□□□□□ -1.04
LDLR-214ENST00000560628 N6AMT1Q9Y5N5 214 aa8.57□□□□□ -1.04
LDLR-214ENST00000560628 LYVE1Q9Y5Y7 322 aa8.57□□□□□ -1.04
LDLR-214ENST00000560628 CDH10Q9Y6N8 788 aa8.57□□□□□ -1.04
LDLR-214ENST00000560628 TANC2Q9HCD6 1990 aa8.56□□□□□ -1.04
LDLR-214ENST00000560628 M0R135 149 aa8.56□□□□□ -1.04
LDLR-214ENST00000560628 BHLHE40O14503 412 aa8.56□□□□□ -1.04
LDLR-214ENST00000560628 CCNB2O95067 398 aa8.56□□□□□ -1.04
LDLR-214ENST00000560628 PSKH1P11801 424 aa8.56□□□□□ -1.04
LDLR-214ENST00000560628 RPS2P15880 293 aaKnown RBP8.56□□□□□ -1.04
LDLR-214ENST00000560628 CA6P23280 308 aa8.56□□□□□ -1.04
LDLR-214ENST00000560628 ANOS1P23352 680 aa8.56□□□□□ -1.04
LDLR-214ENST00000560628 UBA52P62987 128 aaKnown RBP8.56□□□□□ -1.04
LDLR-214ENST00000560628 HOXA4Q00056 320 aaPredicted RBP8.56□□□□□ -1.04
LDLR-214ENST00000560628 MAB21L1Q13394 359 aa8.56□□□□□ -1.04
LDLR-214ENST00000560628 SNAI3Q3KNW1 292 aa8.56□□□□□ -1.04
LDLR-214ENST00000560628 PRAMEF6Q5VXH4 476 aa8.56□□□□□ -1.04
LDLR-214ENST00000560628 LYPD2Q6UXB3 125 aa8.56□□□□□ -1.04
LDLR-214ENST00000560628 RBMS3Q6XE24 437 aaKnown RBP8.56□□□□□ -1.04
LDLR-214ENST00000560628 PGAP1Q75T13 922 aa8.56□□□□□ -1.04
LDLR-214ENST00000560628 MRPL21Q7Z2W9 205 aaKnown RBP8.56□□□□□ -1.04
LDLR-214ENST00000560628 KLBQ86Z14 1044 aa8.56□□□□□ -1.04
LDLR-214ENST00000560628 MUC20Q8N307 709 aaPredicted RBP8.56□□□□□ -1.04
LDLR-214ENST00000560628 BOLLQ8N9W6 283 aaKnown RBP8.56□□□□□ -1.04
LDLR-214ENST00000560628 ZNF511Q8NB15 262 aa8.56□□□□□ -1.04
LDLR-214ENST00000560628 AQP11Q8NBQ7 271 aa8.56□□□□□ -1.04
LDLR-214ENST00000560628 SLC37A3Q8NCC5 494 aa8.56□□□□□ -1.04
LDLR-214ENST00000560628 OR10S1Q8NGN2 331 aa8.56□□□□□ -1.04
LDLR-214ENST00000560628 OR2T4Q8NH00 348 aa8.56□□□□□ -1.04
LDLR-214ENST00000560628 POP5Q969H6 163 aaKnown RBP8.56□□□□□ -1.04
LDLR-214ENST00000560628 SPTSSAQ969W0 71 aa8.56□□□□□ -1.04
LDLR-214ENST00000560628 ZNF799Q96GE5 643 aa8.56□□□□□ -1.04
LDLR-214ENST00000560628 NSL1Q96IY1 281 aa8.56□□□□□ -1.04
LDLR-214ENST00000560628 SSBP3Q9BWW4 388 aaPredicted RBP8.56□□□□□ -1.04
LDLR-214ENST00000560628 TSSK6Q9BXA6 273 aa8.56□□□□□ -1.04
LDLR-214ENST00000560628 TRIM15Q9C019 465 aa8.56□□□□□ -1.04
LDLR-214ENST00000560628 CENPMQ9NSP4 180 aa8.56□□□□□ -1.04
LDLR-214ENST00000560628 DDX28Q9NUL7 540 aaKnown RBP8.56□□□□□ -1.04
LDLR-214ENST00000560628 TBC1D23Q9NUY8 699 aa8.56□□□□□ -1.04
LDLR-214ENST00000560628 NDE1Q9NXR1 346 aa8.56□□□□□ -1.04
LDLR-214ENST00000560628 VNN3Q9NY84 501 aa8.56□□□□□ -1.04
LDLR-214ENST00000560628 IL20Q9NYY1 176 aa8.56□□□□□ -1.04
LDLR-214ENST00000560628 ACTR3BQ9P1U1 418 aa8.56□□□□□ -1.04
LDLR-214ENST00000560628 MIOXQ9UGB7 285 aa8.56□□□□□ -1.04
LDLR-214ENST00000560628 SOX21Q9Y651 276 aaPredicted RBP8.56□□□□□ -1.04
LDLR-214ENST00000560628 U3KQV3 271 aa8.56□□□□□ -1.04
LDLR-214ENST00000560628 TCRBV5S2A0A599 114 aa8.55□□□□□ -1.04
LDLR-214ENST00000560628 GGT3PA6NGU5 568 aa8.55□□□□□ -1.04
LDLR-214ENST00000560628 LRRC30A6NM36 301 aa8.55□□□□□ -1.04
LDLR-214ENST00000560628 CD300LBA8K4G0 201 aa8.55□□□□□ -1.04
LDLR-214ENST00000560628 A8MXK9 166 aa8.55□□□□□ -1.04
LDLR-214ENST00000560628 ZNF593O00488 134 aaPredicted RBP8.55□□□□□ -1.04
LDLR-214ENST00000560628 FAM20BO75063 409 aa8.55□□□□□ -1.04
LDLR-214ENST00000560628 SOX14O95416 240 aa8.55□□□□□ -1.04
LDLR-214ENST00000560628 GYPBP06028 91 aa8.55□□□□□ -1.04
LDLR-214ENST00000560628 SPARCP09486 303 aa8.55□□□□□ -1.04
LDLR-214ENST00000560628 CLUP10909 449 aa8.55□□□□□ -1.04
LDLR-214ENST00000560628 IRF2P14316 349 aa8.55□□□□□ -1.04
LDLR-214ENST00000560628 PRKXP51817 358 aa8.55□□□□□ -1.04
LDLR-214ENST00000560628 MNAT1P51948 309 aa8.55□□□□□ -1.04
LDLR-214ENST00000560628 GNB2P62879 340 aa8.55□□□□□ -1.04
LDLR-214ENST00000560628 MS4A2Q01362 244 aa8.55□□□□□ -1.04
LDLR-214ENST00000560628 ZNF92Q03936 586 aa8.55□□□□□ -1.04
LDLR-214ENST00000560628 PAX8Q06710 450 aa8.55□□□□□ -1.04
LDLR-214ENST00000560628 CRMP1Q14194 572 aa8.55□□□□□ -1.04
LDLR-214ENST00000560628 TAF13Q15543 124 aa8.55□□□□□ -1.04
LDLR-214ENST00000560628 OR8G1Q15617 311 aa8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms