RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 J3QW42 95 aa18.67■□□□□ 0.58
SNX1-210ENST00000560260 SRSF10O75494 262 aaKnown RBP18.67■□□□□ 0.58
SNX1-210ENST00000560260 PRSS12P56730 875 aa18.67■□□□□ 0.58
SNX1-210ENST00000560260 PSMA6P60900 246 aaKnown RBP18.67■□□□□ 0.58
SNX1-210ENST00000560260 DEGS2Q6QHC5 323 aa18.67■□□□□ 0.58
SNX1-210ENST00000560260 FGF20Q9NP95 211 aaPredicted RBP18.67■□□□□ 0.58
SNX1-210ENST00000560260 FAIMQ9NVQ4 179 aa18.67■□□□□ 0.58
SNX1-210ENST00000560260 ZNF319Q9P2F9 582 aa18.67■□□□□ 0.58
SNX1-210ENST00000560260 OVOL3O00110 214 aa18.66■□□□□ 0.58
SNX1-210ENST00000560260 ANXA2P07355 339 aaKnown RBP18.66■□□□□ 0.58
SNX1-210ENST00000560260 CDKN1AP38936 164 aa18.66■□□□□ 0.58
SNX1-210ENST00000560260 ACTC1P68032 377 aa18.66■□□□□ 0.58
SNX1-210ENST00000560260 ACTA1P68133 377 aa18.66■□□□□ 0.58
SNX1-210ENST00000560260 EGR3Q06889 387 aa18.66■□□□□ 0.58
SNX1-210ENST00000560260 MFGE8Q08431 387 aaPredicted RBP18.66■□□□□ 0.58
SNX1-210ENST00000560260 HLXQ14774 488 aaPredicted RBP18.66■□□□□ 0.58
SNX1-210ENST00000560260 ALKBH6Q3KRA9 238 aa18.66■□□□□ 0.58
SNX1-210ENST00000560260 MBNL2Q5VZF2 373 aaKnown RBP18.66■□□□□ 0.58
SNX1-210ENST00000560260 ACBD7Q8N6N7 88 aa18.66■□□□□ 0.58
SNX1-210ENST00000560260 SYNPRQ8TBG9 265 aa18.66■□□□□ 0.58
SNX1-210ENST00000560260 GGHQ92820 318 aa18.66■□□□□ 0.58
SNX1-210ENST00000560260 MROQ9BYG7 248 aa18.66■□□□□ 0.58
SNX1-210ENST00000560260 BRD7Q9NPI1 651 aa18.66■□□□□ 0.58
SNX1-210ENST00000560260 FAM206AQ9NX38 181 aa18.66■□□□□ 0.58
SNX1-210ENST00000560260 DUSP13Q9UII6 198 aa18.66■□□□□ 0.58
SNX1-210ENST00000560260 N6AMT1Q9Y5N5 214 aa18.66■□□□□ 0.58
SNX1-210ENST00000560260 AKAP9Q99996 3911 aa18.65■□□□□ 0.58
SNX1-210ENST00000560260 ARFGEF3Q5TH69 2177 aa18.65■□□□□ 0.58
SNX1-210ENST00000560260 DAPL1A0PJW8 107 aa18.65■□□□□ 0.58
SNX1-210ENST00000560260 B9A039 149 aa18.65■□□□□ 0.58
SNX1-210ENST00000560260 ZNF254O75437 659 aa18.65■□□□□ 0.58
SNX1-210ENST00000560260 RIDAP52758 137 aaKnown RBP18.65■□□□□ 0.58
SNX1-210ENST00000560260 MVKQ03426 396 aa18.65■□□□□ 0.58
SNX1-210ENST00000560260 PSG7Q13046 419 aa18.65■□□□□ 0.58
SNX1-210ENST00000560260 ZNF718Q3SXZ3 478 aa18.65■□□□□ 0.58
SNX1-210ENST00000560260 TP53I3Q53FA7 332 aa18.65■□□□□ 0.58
SNX1-210ENST00000560260 C6orf141Q5SZD1 244 aa18.65■□□□□ 0.58
SNX1-210ENST00000560260 GLYATL3Q5SZD4 288 aa18.65■□□□□ 0.58
SNX1-210ENST00000560260 UNQ6126/PRO20091Q6UXV3 157 aa18.65■□□□□ 0.58
SNX1-210ENST00000560260 FAM57BQ71RH2 274 aa18.65■□□□□ 0.58
SNX1-210ENST00000560260 HIST2H2ABQ8IUE6 130 aaPredicted RBP18.65■□□□□ 0.58
SNX1-210ENST00000560260 NAV2Q8IVL1 2488 aa18.65■□□□□ 0.58
SNX1-210ENST00000560260 BPIFB6Q8NFQ5 453 aa18.65■□□□□ 0.58
SNX1-210ENST00000560260 OR2AE1Q8NHA4 323 aa18.65■□□□□ 0.58
SNX1-210ENST00000560260 GTF3AQ92664 365 aaKnown RBP18.65■□□□□ 0.58
SNX1-210ENST00000560260 RNF166Q96A37 237 aaPredicted RBP18.65■□□□□ 0.58
SNX1-210ENST00000560260 CNBD2Q96M20 576 aa18.65■□□□□ 0.58
SNX1-210ENST00000560260 CACNG6Q9BXT2 260 aa18.65■□□□□ 0.58
SNX1-210ENST00000560260 PLCXD1Q9NUJ7 323 aa18.65■□□□□ 0.58
SNX1-210ENST00000560260 PSORS1C1Q9UIG5 152 aa18.65■□□□□ 0.58
SNX1-210ENST00000560260 H3BSA7 217 aa18.64■□□□□ 0.57
SNX1-210ENST00000560260 FAM20BO75063 409 aa18.64■□□□□ 0.57
SNX1-210ENST00000560260 FADS2O95864 444 aaKnown RBP18.64■□□□□ 0.57
SNX1-210ENST00000560260 PNPP00491 289 aa18.64■□□□□ 0.57
SNX1-210ENST00000560260 DCTDP32321 178 aa18.64■□□□□ 0.57
SNX1-210ENST00000560260 ALDH3B1P43353 468 aa18.64■□□□□ 0.57
SNX1-210ENST00000560260 KLF3P57682 345 aaPredicted RBP18.64■□□□□ 0.57
SNX1-210ENST00000560260 CDONQ4KMG0 1287 aa18.64■□□□□ 0.57
SNX1-210ENST00000560260 KLHL22Q53GT1 634 aa18.64■□□□□ 0.57
SNX1-210ENST00000560260 FBXW12Q6X9E4 464 aa18.64■□□□□ 0.57
SNX1-210ENST00000560260 LHFPL3Q86UP9 236 aa18.64■□□□□ 0.57
SNX1-210ENST00000560260 C1orf174Q8IYL3 243 aa18.64■□□□□ 0.57
SNX1-210ENST00000560260 CMBLQ96DG6 245 aa18.64■□□□□ 0.57
SNX1-210ENST00000560260 JAM3Q9BX67 310 aa18.64■□□□□ 0.57
SNX1-210ENST00000560260 RASSF4Q9H2L5 321 aa18.64■□□□□ 0.57
SNX1-210ENST00000560260 NIPAL2Q9H841 368 aa18.64■□□□□ 0.57
SNX1-210ENST00000560260 ACOXLQ9NUZ1 547 aa18.64■□□□□ 0.57
SNX1-210ENST00000560260 PCDHGB1Q9Y5G3 927 aa18.64■□□□□ 0.57
SNX1-210ENST00000560260 NOTCH2Q04721 2471 aa18.63■□□□□ 0.57
SNX1-210ENST00000560260 A0A1W2PPW3 197 aa18.63■□□□□ 0.57
SNX1-210ENST00000560260 METTL15A6NJ78 407 aa18.63■□□□□ 0.57
SNX1-210ENST00000560260 SLC1A7O00341 560 aa18.63■□□□□ 0.57
SNX1-210ENST00000560260 IGHV3-13P01766 116 aa18.63■□□□□ 0.57
SNX1-210ENST00000560260 LIMS3P0CW19 117 aa18.63■□□□□ 0.57
SNX1-210ENST00000560260 LIMS4P0CW20 117 aa18.63■□□□□ 0.57
SNX1-210ENST00000560260 PIPP12273 146 aaPredicted RBP18.63■□□□□ 0.57
SNX1-210ENST00000560260 DNASE1P24855 282 aa18.63■□□□□ 0.57
SNX1-210ENST00000560260 EVX1P49640 407 aa18.63■□□□□ 0.57
SNX1-210ENST00000560260 SNRPD2P62316 118 aaKnown RBP18.63■□□□□ 0.57
SNX1-210ENST00000560260 ZNF92Q03936 586 aa18.63■□□□□ 0.57
SNX1-210ENST00000560260 GK2Q14410 553 aaPredicted RBP18.63■□□□□ 0.57
SNX1-210ENST00000560260 OR8B12Q8NGG6 310 aa18.63■□□□□ 0.57
SNX1-210ENST00000560260 SGCDQ92629 289 aa18.63■□□□□ 0.57
SNX1-210ENST00000560260 NINJ1Q92982 152 aa18.63■□□□□ 0.57
SNX1-210ENST00000560260 PPP1R14AQ96A00 147 aa18.63■□□□□ 0.57
SNX1-210ENST00000560260 COG8Q96MW5 612 aa18.63■□□□□ 0.57
SNX1-210ENST00000560260 ALG8Q9BVK2 526 aa18.63■□□□□ 0.57
SNX1-210ENST00000560260 FKBP14Q9NWM8 211 aa18.63■□□□□ 0.57
SNX1-210ENST00000560260 ERVK13-1Q9NX77 482 aa18.63■□□□□ 0.57
SNX1-210ENST00000560260 TAAR3PQ9P1P4 343 aa18.63■□□□□ 0.57
SNX1-210ENST00000560260 USF3Q68DE3 2245 aa18.62■□□□□ 0.57
SNX1-210ENST00000560260 VSTM5A8MXK1 200 aa18.62■□□□□ 0.57
SNX1-210ENST00000560260 TBX1O43435 398 aa18.62■□□□□ 0.57
SNX1-210ENST00000560260 APOC1P02654 83 aa18.62■□□□□ 0.57
SNX1-210ENST00000560260 KRT8P05787 483 aa18.62■□□□□ 0.57
SNX1-210ENST00000560260 GCH1P30793 250 aa18.62■□□□□ 0.57
SNX1-210ENST00000560260 OR12D2P58182 307 aa18.62■□□□□ 0.57
SNX1-210ENST00000560260 GALEQ14376 348 aa18.62■□□□□ 0.57
SNX1-210ENST00000560260 LIPNQ5VXI9 398 aa18.62■□□□□ 0.57
SNX1-210ENST00000560260 AHSA2Q719I0 299 aa18.62■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms