RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 ERCC1P07992 297 aaPredicted RBP8□□□□□ -1.13
LDLR-211ENST00000560173 CSF3P09919 207 aa8□□□□□ -1.13
LDLR-211ENST00000560173 ACSM4P0C7M7 580 aa8□□□□□ -1.13
LDLR-211ENST00000560173 SMIM18P0DKX4 95 aa8□□□□□ -1.13
LDLR-211ENST00000560173 NAT2P11245 290 aa8□□□□□ -1.13
LDLR-211ENST00000560173 TUBG1P23258 451 aa8□□□□□ -1.13
LDLR-211ENST00000560173 EEF1B2P24534 225 aaKnown RBP8□□□□□ -1.13
LDLR-211ENST00000560173 GCH1P30793 250 aa8□□□□□ -1.13
LDLR-211ENST00000560173 OTX1P32242 354 aaPredicted RBP8□□□□□ -1.13
LDLR-211ENST00000560173 DSCR9P59020 149 aa8□□□□□ -1.13
LDLR-211ENST00000560173 ISL1P61371 349 aa8□□□□□ -1.13
LDLR-211ENST00000560173 IL5RAQ01344 420 aa8□□□□□ -1.13
LDLR-211ENST00000560173 ALKBH6Q3KRA9 238 aa8□□□□□ -1.13
LDLR-211ENST00000560173 SLC35D3Q5M8T2 416 aa8□□□□□ -1.13
LDLR-211ENST00000560173 C6orf141Q5SZD1 244 aa8□□□□□ -1.13
LDLR-211ENST00000560173 ZNF773Q6PK81 442 aa8□□□□□ -1.13
LDLR-211ENST00000560173 COLCA1Q6ZS62 124 aa8□□□□□ -1.13
LDLR-211ENST00000560173 CXXC5Q7LFL8 322 aaKnown RBP8□□□□□ -1.13
LDLR-211ENST00000560173 DCXRQ7Z4W1 244 aa8□□□□□ -1.13
LDLR-211ENST00000560173 ERI1Q8IV48 349 aaKnown RBP8□□□□□ -1.13
LDLR-211ENST00000560173 ST7LQ8TDW4 575 aa8□□□□□ -1.13
LDLR-211ENST00000560173 FBLIM1Q8WUP2 373 aa8□□□□□ -1.13
LDLR-211ENST00000560173 TRUB1Q8WWH5 349 aaKnown RBP8□□□□□ -1.13
LDLR-211ENST00000560173 GTF3AQ92664 365 aaKnown RBP8□□□□□ -1.13
LDLR-211ENST00000560173 APOBEC3DQ96AK3 386 aaPredicted RBP8□□□□□ -1.13
LDLR-211ENST00000560173 Q96MT0 163 aa8□□□□□ -1.13
LDLR-211ENST00000560173 COG8Q96MW5 612 aa8□□□□□ -1.13
LDLR-211ENST00000560173 REPIN1Q9BWE0 567 aaKnown RBP8□□□□□ -1.13
LDLR-211ENST00000560173 TPK1Q9H3S4 243 aa8□□□□□ -1.13
LDLR-211ENST00000560173 MS4A5Q9H3V2 200 aa8□□□□□ -1.13
LDLR-211ENST00000560173 MYOZ1Q9NP98 299 aaPredicted RBP8□□□□□ -1.13
LDLR-211ENST00000560173 TUBG2Q9NRH3 451 aa8□□□□□ -1.13
LDLR-211ENST00000560173 IMPAD1Q9NX62 359 aa8□□□□□ -1.13
LDLR-211ENST00000560173 GPR160Q9UJ42 338 aa8□□□□□ -1.13
LDLR-211ENST00000560173 STARD10Q9Y365 291 aa8□□□□□ -1.13
LDLR-211ENST00000560173 SNX5Q9Y5X3 404 aa8□□□□□ -1.13
LDLR-211ENST00000560173 ABCA1O95477 2261 aa7.99□□□□□ -1.13
LDLR-211ENST00000560173 HIVEP2P31629 2446 aa7.99□□□□□ -1.13
LDLR-211ENST00000560173 A0A096LNT2 108 aa7.99□□□□□ -1.13
LDLR-211ENST00000560173 CCDC182A6NF36 153 aa7.99□□□□□ -1.13
LDLR-211ENST00000560173 C17orf100A8MU93 164 aa7.99□□□□□ -1.13
LDLR-211ENST00000560173 RNF223E7ERA6 249 aa7.99□□□□□ -1.13
LDLR-211ENST00000560173 E9PQ18 207 aa7.99□□□□□ -1.13
LDLR-211ENST00000560173 F5H5K5 113 aa7.99□□□□□ -1.13
LDLR-211ENST00000560173 SELENOFO60613 162 aa7.99□□□□□ -1.13
LDLR-211ENST00000560173 NCR1O76036 304 aa7.99□□□□□ -1.13
LDLR-211ENST00000560173 INHBBP09529 407 aa7.99□□□□□ -1.13
LDLR-211ENST00000560173 DAOP14920 347 aa7.99□□□□□ -1.13
LDLR-211ENST00000560173 ATP6V1B1P15313 513 aa7.99□□□□□ -1.13
LDLR-211ENST00000560173 CRHBPP24387 322 aa7.99□□□□□ -1.13
LDLR-211ENST00000560173 POLR2IP36954 125 aaKnown RBP7.99□□□□□ -1.13
LDLR-211ENST00000560173 PDLIM4P50479 330 aa7.99□□□□□ -1.13
LDLR-211ENST00000560173 MMP15P51511 669 aa7.99□□□□□ -1.13
LDLR-211ENST00000560173 EFNB1P98172 346 aa7.99□□□□□ -1.13
LDLR-211ENST00000560173 PSG7Q13046 419 aa7.99□□□□□ -1.13
LDLR-211ENST00000560173 EIF2B1Q14232 305 aaKnown RBP7.99□□□□□ -1.13
LDLR-211ENST00000560173 MOGQ16653 247 aa7.99□□□□□ -1.13
LDLR-211ENST00000560173 KLHL12Q53G59 568 aa7.99□□□□□ -1.13
LDLR-211ENST00000560173 DPY19L4Q7Z388 723 aa7.99□□□□□ -1.13
LDLR-211ENST00000560173 SVOPQ8N4V2 548 aa7.99□□□□□ -1.13
LDLR-211ENST00000560173 TCEANCQ8N8B7 351 aa7.99□□□□□ -1.13
LDLR-211ENST00000560173 OR6N2Q8NGY6 317 aa7.99□□□□□ -1.13
LDLR-211ENST00000560173 TMEM163Q8TC26 289 aa7.99□□□□□ -1.13
LDLR-211ENST00000560173 C10orf105Q8TEF2 133 aa7.99□□□□□ -1.13
LDLR-211ENST00000560173 SNX33Q8WV41 574 aa7.99□□□□□ -1.13
LDLR-211ENST00000560173 FAM168AQ92567 244 aa7.99□□□□□ -1.13
LDLR-211ENST00000560173 SPTSSAQ969W0 71 aa7.99□□□□□ -1.13
LDLR-211ENST00000560173 DGCR14Q96DF8 476 aaKnown RBP7.99□□□□□ -1.13
LDLR-211ENST00000560173 SLAMF6Q96DU3 332 aa7.99□□□□□ -1.13
LDLR-211ENST00000560173 AMELYQ99218 206 aa7.99□□□□□ -1.13
LDLR-211ENST00000560173 RHNO1Q9BSD3 238 aa7.99□□□□□ -1.13
LDLR-211ENST00000560173 COPS4Q9BT78 406 aa7.99□□□□□ -1.13
LDLR-211ENST00000560173 C1QTNF5Q9BXJ0 243 aa7.99□□□□□ -1.13
LDLR-211ENST00000560173 REG4Q9BYZ8 158 aa7.99□□□□□ -1.13
LDLR-211ENST00000560173 LOC390937A0A1W2PQ73 354 aa7.98□□□□□ -1.13
LDLR-211ENST00000560173 ZSCAN5BA6NJL1 495 aa7.98□□□□□ -1.13
LDLR-211ENST00000560173 SNTNA6NMZ2 147 aa7.98□□□□□ -1.13
LDLR-211ENST00000560173 ZNF878C9JN71 531 aa7.98□□□□□ -1.13
LDLR-211ENST00000560173 ZNF701M0R085 212 aaPredicted RBP7.98□□□□□ -1.13
LDLR-211ENST00000560173 M0R135 149 aa7.98□□□□□ -1.13
LDLR-211ENST00000560173 SMAD7O15105 426 aaKnown RBP7.98□□□□□ -1.13
LDLR-211ENST00000560173 TLX2O43763 284 aaPredicted RBP7.98□□□□□ -1.13
LDLR-211ENST00000560173 TIMM8AO60220 97 aaPredicted RBP7.98□□□□□ -1.13
LDLR-211ENST00000560173 CLIC3O95833 236 aa7.98□□□□□ -1.13
LDLR-211ENST00000560173 HPXP02790 462 aa7.98□□□□□ -1.13
LDLR-211ENST00000560173 MT-ND5P03915 603 aa7.98□□□□□ -1.13
LDLR-211ENST00000560173 TFAP2AP05549 437 aa7.98□□□□□ -1.13
LDLR-211ENST00000560173 RAC2P15153 192 aa7.98□□□□□ -1.13
LDLR-211ENST00000560173 SLC25A16P16260 332 aa7.98□□□□□ -1.13
LDLR-211ENST00000560173 KITLGP21583 273 aa7.98□□□□□ -1.13
LDLR-211ENST00000560173 ANOS1P23352 680 aa7.98□□□□□ -1.13
LDLR-211ENST00000560173 NAA10P41227 235 aaPredicted RBP7.98□□□□□ -1.13
LDLR-211ENST00000560173 TPTEP56180 551 aa7.98□□□□□ -1.13
LDLR-211ENST00000560173 RPS7P62081 194 aaKnown RBP7.98□□□□□ -1.13
LDLR-211ENST00000560173 MVKQ03426 396 aa7.98□□□□□ -1.13
LDLR-211ENST00000560173 CDK5R2Q13319 367 aa7.98□□□□□ -1.13
LDLR-211ENST00000560173 CARTPTQ16568 116 aa7.98□□□□□ -1.13
LDLR-211ENST00000560173 PCGF3Q3KNV8 242 aa7.98□□□□□ -1.13
LDLR-211ENST00000560173 LCN1P1Q5VSP4 162 aa7.98□□□□□ -1.13
LDLR-211ENST00000560173 AADACL4Q5VUY2 407 aa7.98□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms