RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 YIPF7Q8N8F6 280 aa11.02□□□□□ -0.65
SHMT2-227ENST00000557269 SLC25A40Q8TBP6 338 aa11.02□□□□□ -0.65
SHMT2-227ENST00000557269 RORBQ92753 470 aa11.02□□□□□ -0.65
SHMT2-227ENST00000557269 MARS2Q96GW9 593 aaKnown RBP11.02□□□□□ -0.65
SHMT2-227ENST00000557269 DHRS9Q9BPW9 319 aa11.02□□□□□ -0.65
SHMT2-227ENST00000557269 OR2J1Q9GZK6 312 aa11.02□□□□□ -0.65
SHMT2-227ENST00000557269 DUSP21Q9H596 190 aa11.02□□□□□ -0.65
SHMT2-227ENST00000557269 INPP5EQ9NRR6 644 aa11.02□□□□□ -0.65
SHMT2-227ENST00000557269 ACOXLQ9NUZ1 547 aa11.02□□□□□ -0.65
SHMT2-227ENST00000557269 SCN3BQ9NY72 215 aa11.02□□□□□ -0.65
SHMT2-227ENST00000557269 PTTG3PQ9NZH4 202 aa11.02□□□□□ -0.65
SHMT2-227ENST00000557269 GNG8Q9UK08 70 aa11.02□□□□□ -0.65
SHMT2-227ENST00000557269 SPEF1Q9Y4P9 236 aa11.02□□□□□ -0.65
SHMT2-227ENST00000557269 CRYBG3Q68DQ2 2970 aa11.02□□□□□ -0.65
SHMT2-227ENST00000557269 BAHCC1Q9P281 2608 aa11.02□□□□□ -0.65
SHMT2-227ENST00000557269 RAI1Q7Z5J4 1906 aaPredicted RBP11.01□□□□□ -0.65
SHMT2-227ENST00000557269 ABCA4P78363 2273 aa11.01□□□□□ -0.65
SHMT2-227ENST00000557269 CELSR2Q9HCU4 2923 aa11.01□□□□□ -0.65
SHMT2-227ENST00000557269 TMEM269A0A1B0GVZ9 245 aa11.01□□□□□ -0.65
SHMT2-227ENST00000557269 TMEM129A0AVI4 362 aa11.01□□□□□ -0.65
SHMT2-227ENST00000557269 IRGMA1A4Y4 181 aa11.01□□□□□ -0.65
SHMT2-227ENST00000557269 E9PI62 339 aa11.01□□□□□ -0.65
SHMT2-227ENST00000557269 J3QLW9 94 aa11.01□□□□□ -0.65
SHMT2-227ENST00000557269 SULT1C4O75897 302 aa11.01□□□□□ -0.65
SHMT2-227ENST00000557269 CLPTM1O96005 669 aa11.01□□□□□ -0.65
SHMT2-227ENST00000557269 ANXA2P07355 339 aaKnown RBP11.01□□□□□ -0.65
SHMT2-227ENST00000557269 HTR1AP08908 422 aa11.01□□□□□ -0.65
SHMT2-227ENST00000557269 ZNF19P17023 458 aa11.01□□□□□ -0.65
SHMT2-227ENST00000557269 DCTDP32321 178 aa11.01□□□□□ -0.65
SHMT2-227ENST00000557269 PSMA6P60900 246 aaKnown RBP11.01□□□□□ -0.65
SHMT2-227ENST00000557269 RBM48Q5RL73 367 aaKnown RBP11.01□□□□□ -0.65
SHMT2-227ENST00000557269 GLYATL3Q5SZD4 288 aa11.01□□□□□ -0.65
SHMT2-227ENST00000557269 STX19Q8N4C7 294 aa11.01□□□□□ -0.65
SHMT2-227ENST00000557269 APOBEC3DQ96AK3 386 aaPredicted RBP11.01□□□□□ -0.65
SHMT2-227ENST00000557269 SGK3Q96BR1 496 aa11.01□□□□□ -0.65
SHMT2-227ENST00000557269 C4orf36Q96KX1 117 aa11.01□□□□□ -0.65
SHMT2-227ENST00000557269 SIGLEC11Q96RL6 698 aa11.01□□□□□ -0.65
SHMT2-227ENST00000557269 MRPL37Q9BZE1 423 aaKnown RBP11.01□□□□□ -0.65
SHMT2-227ENST00000557269 BCL2L14Q9BZR8 327 aa11.01□□□□□ -0.65
SHMT2-227ENST00000557269 ZNF442Q9H7R0 627 aa11.01□□□□□ -0.65
SHMT2-227ENST00000557269 NIPAL2Q9H841 368 aa11.01□□□□□ -0.65
SHMT2-227ENST00000557269 MYEF2Q9P2K5 600 aaKnown RBP11.01□□□□□ -0.65
SHMT2-227ENST00000557269 TPRKBQ9Y3C4 175 aa11.01□□□□□ -0.65
SHMT2-227ENST00000557269 CD8AP01732 235 aa11□□□□□ -0.65
SHMT2-227ENST00000557269 SOD3P08294 240 aa11□□□□□ -0.65
SHMT2-227ENST00000557269 DANCRP0C864 163 aa11□□□□□ -0.65
SHMT2-227ENST00000557269 APOBEC3AP31941 199 aaPredicted RBP11□□□□□ -0.65
SHMT2-227ENST00000557269 TTKP33981 857 aa11□□□□□ -0.65
SHMT2-227ENST00000557269 SERPINF1P36955 418 aa11□□□□□ -0.65
SHMT2-227ENST00000557269 RGS6P49758 472 aa11□□□□□ -0.65
SHMT2-227ENST00000557269 MMP16P51512 607 aa11□□□□□ -0.65
SHMT2-227ENST00000557269 NANOS3P60323 173 aaKnown RBP11□□□□□ -0.65
SHMT2-227ENST00000557269 ZNF92Q03936 586 aa11□□□□□ -0.65
SHMT2-227ENST00000557269 IRF3Q14653 427 aa11□□□□□ -0.65
SHMT2-227ENST00000557269 ALKBH6Q3KRA9 238 aa11□□□□□ -0.65
SHMT2-227ENST00000557269 RGS7BPQ6MZT1 257 aaPredicted RBP11□□□□□ -0.65
SHMT2-227ENST00000557269 ARL9Q6T311 187 aa11□□□□□ -0.65
SHMT2-227ENST00000557269 PRSS35Q8N3Z0 413 aa11□□□□□ -0.65
SHMT2-227ENST00000557269 ZNF611Q8N823 705 aa11□□□□□ -0.65
SHMT2-227ENST00000557269 ZNF485Q8NCK3 441 aa11□□□□□ -0.65
SHMT2-227ENST00000557269 OR8B12Q8NGG6 310 aa11□□□□□ -0.65
SHMT2-227ENST00000557269 OR2AE1Q8NHA4 323 aa11□□□□□ -0.65
SHMT2-227ENST00000557269 KLF14Q8TD94 323 aaPredicted RBP11□□□□□ -0.65
SHMT2-227ENST00000557269 SPRYD4Q8WW59 207 aaPredicted RBP11□□□□□ -0.65
SHMT2-227ENST00000557269 IPCEF1Q8WWN9 437 aaPredicted RBP11□□□□□ -0.65
SHMT2-227ENST00000557269 MYDGFQ969H8 173 aa11□□□□□ -0.65
SHMT2-227ENST00000557269 FBXW5Q969U6 566 aa11□□□□□ -0.65
SHMT2-227ENST00000557269 MRPL24Q96A35 216 aaKnown RBP11□□□□□ -0.65
SHMT2-227ENST00000557269 PELI1Q96FA3 418 aa11□□□□□ -0.65
SHMT2-227ENST00000557269 LYZL4Q96KX0 146 aa11□□□□□ -0.65
SHMT2-227ENST00000557269 SYT3Q9BQG1 590 aa11□□□□□ -0.65
SHMT2-227ENST00000557269 SOX7Q9BT81 388 aa11□□□□□ -0.65
SHMT2-227ENST00000557269 G6PC2Q9NQR9 355 aa11□□□□□ -0.65
SHMT2-227ENST00000557269 SLC22A13Q9Y226 551 aa11□□□□□ -0.65
SHMT2-227ENST00000557269 EXOSC1Q9Y3B2 195 aaKnown RBP11□□□□□ -0.65
SHMT2-227ENST00000557269 R4GMQ9 66 aa11□□□□□ -0.65
SHMT2-227ENST00000557269 TBX1O43435 398 aa10.99□□□□□ -0.65
SHMT2-227ENST00000557269 LALBAP00709 142 aa10.99□□□□□ -0.65
SHMT2-227ENST00000557269 MT-ND2P03891 347 aa10.99□□□□□ -0.65
SHMT2-227ENST00000557269 ZNF250P15622 560 aa10.99□□□□□ -0.65
SHMT2-227ENST00000557269 MYL12AP19105 171 aa10.99□□□□□ -0.65
SHMT2-227ENST00000557269 KIR3DL2P43630 455 aa10.99□□□□□ -0.65
SHMT2-227ENST00000557269 GTF2A1P52655 376 aaPredicted RBP10.99□□□□□ -0.65
SHMT2-227ENST00000557269 CDH15P55291 814 aa10.99□□□□□ -0.65
SHMT2-227ENST00000557269 ACTA2P62736 377 aa10.99□□□□□ -0.65
SHMT2-227ENST00000557269 ACTG2P63267 376 aa10.99□□□□□ -0.65
SHMT2-227ENST00000557269 PSG7Q13046 419 aa10.99□□□□□ -0.65
SHMT2-227ENST00000557269 GK2Q14410 553 aaPredicted RBP10.99□□□□□ -0.65
SHMT2-227ENST00000557269 WDR38Q5JTN6 314 aa10.99□□□□□ -0.65
SHMT2-227ENST00000557269 MBNL2Q5VZF2 373 aaKnown RBP10.99□□□□□ -0.65
SHMT2-227ENST00000557269 XAF1Q6GPH4 301 aa10.99□□□□□ -0.65
SHMT2-227ENST00000557269 ZNF544Q6NX49 715 aa10.99□□□□□ -0.65
SHMT2-227ENST00000557269 KCTD20Q7Z5Y7 419 aa10.99□□□□□ -0.65
SHMT2-227ENST00000557269 CATSPERDQ86XM0 798 aa10.99□□□□□ -0.65
SHMT2-227ENST00000557269 SYS1Q8N2H4 156 aa10.99□□□□□ -0.65
SHMT2-227ENST00000557269 GATAD2BQ8WXI9 593 aa10.99□□□□□ -0.65
SHMT2-227ENST00000557269 CMBLQ96DG6 245 aa10.99□□□□□ -0.65
SHMT2-227ENST00000557269 PGAM5Q96HS1 289 aa10.99□□□□□ -0.65
SHMT2-227ENST00000557269 CDCA4Q9BXL8 241 aa10.99□□□□□ -0.65
SHMT2-227ENST00000557269 PBOV1Q9GZY1 135 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms