RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 OR2V2Q96R30 315 aa13.55□□□□□ -0.24
CCDC88C-209ENST00000554872 SIGLEC11Q96RL6 698 aa13.55□□□□□ -0.24
CCDC88C-209ENST00000554872 OPA3Q9H6K4 179 aa13.55□□□□□ -0.24
CCDC88C-209ENST00000554872 G6PC2Q9NQR9 355 aa13.55□□□□□ -0.24
CCDC88C-209ENST00000554872 DNAJB9Q9UBS3 223 aa13.55□□□□□ -0.24
CCDC88C-209ENST00000554872 F5H5K5 113 aa13.54□□□□□ -0.24
CCDC88C-209ENST00000554872 J3QLI3 93 aa13.54□□□□□ -0.24
CCDC88C-209ENST00000554872 PHF1O43189 567 aaPredicted RBP13.54□□□□□ -0.24
CCDC88C-209ENST00000554872 FKBP6O75344 327 aa13.54□□□□□ -0.24
CCDC88C-209ENST00000554872 PSKH1P11801 424 aa13.54□□□□□ -0.24
CCDC88C-209ENST00000554872 ANXA8P13928 327 aa13.54□□□□□ -0.24
CCDC88C-209ENST00000554872 GATA4P43694 442 aa13.54□□□□□ -0.24
CCDC88C-209ENST00000554872 MALLQ13021 153 aa13.54□□□□□ -0.24
CCDC88C-209ENST00000554872 GK2Q14410 553 aaPredicted RBP13.54□□□□□ -0.24
CCDC88C-209ENST00000554872 OR2T2Q6IF00 324 aa13.54□□□□□ -0.24
CCDC88C-209ENST00000554872 IL17RELQ6ZVW7 336 aa13.54□□□□□ -0.24
CCDC88C-209ENST00000554872 TMEM179BQ7Z7N9 219 aa13.54□□□□□ -0.24
CCDC88C-209ENST00000554872 ITLN1Q8WWA0 313 aa13.54□□□□□ -0.24
CCDC88C-209ENST00000554872 GAL3ST1Q99999 423 aa13.54□□□□□ -0.24
CCDC88C-209ENST00000554872 SLC22A4Q9H015 551 aa13.54□□□□□ -0.24
CCDC88C-209ENST00000554872 WDR76Q9H967 626 aa13.54□□□□□ -0.24
CCDC88C-209ENST00000554872 GCM1Q9NP62 436 aa13.54□□□□□ -0.24
CCDC88C-209ENST00000554872 PPP1R3CQ9UQK1 317 aa13.54□□□□□ -0.24
CCDC88C-209ENST00000554872 POLR3KQ9Y2Y1 108 aaPredicted RBP13.54□□□□□ -0.24
CCDC88C-209ENST00000554872 NOP16Q9Y3C1 178 aaKnown RBP13.54□□□□□ -0.24
CCDC88C-209ENST00000554872 TVP23AA6NH52 213 aa13.53□□□□□ -0.24
CCDC88C-209ENST00000554872 ZNF878C9JN71 531 aa13.53□□□□□ -0.24
CCDC88C-209ENST00000554872 GNGT2O14610 69 aa13.53□□□□□ -0.24
CCDC88C-209ENST00000554872 GSC2O15499 205 aa13.53□□□□□ -0.24
CCDC88C-209ENST00000554872 MLNRO43193 412 aa13.53□□□□□ -0.24
CCDC88C-209ENST00000554872 ATP5HO75947 161 aa13.53□□□□□ -0.24
CCDC88C-209ENST00000554872 PNPP00491 289 aa13.53□□□□□ -0.24
CCDC88C-209ENST00000554872 OSMP13725 252 aa13.53□□□□□ -0.24
CCDC88C-209ENST00000554872 SRP9P49458 86 aaKnown RBP13.53□□□□□ -0.24
CCDC88C-209ENST00000554872 RASSF2P50749 326 aa13.53□□□□□ -0.24
CCDC88C-209ENST00000554872 MMP16P51512 607 aa13.53□□□□□ -0.24
CCDC88C-209ENST00000554872 CBX1P83916 185 aa13.53□□□□□ -0.24
CCDC88C-209ENST00000554872 LYPD4Q6UWN0 246 aa13.53□□□□□ -0.24
CCDC88C-209ENST00000554872 DCXRQ7Z4W1 244 aa13.53□□□□□ -0.24
CCDC88C-209ENST00000554872 SPATA24Q86W54 205 aa13.53□□□□□ -0.24
CCDC88C-209ENST00000554872 LRRC28Q86X40 367 aaPredicted RBP13.53□□□□□ -0.24
CCDC88C-209ENST00000554872 SPICQ8N5J4 248 aa13.53□□□□□ -0.24
CCDC88C-209ENST00000554872 RFLNBQ8N5W9 214 aa13.53□□□□□ -0.24
CCDC88C-209ENST00000554872 OR51L1Q8NGJ5 315 aa13.53□□□□□ -0.24
CCDC88C-209ENST00000554872 ERGIC1Q969X5 290 aa13.53□□□□□ -0.24
CCDC88C-209ENST00000554872 SLCO4A1Q96BD0 722 aa13.53□□□□□ -0.24
CCDC88C-209ENST00000554872 MEGF10Q96KG7 1140 aa13.53□□□□□ -0.24
CCDC88C-209ENST00000554872 KCNJ15Q99712 375 aa13.53□□□□□ -0.24
CCDC88C-209ENST00000554872 REPIN1Q9BWE0 567 aaKnown RBP13.53□□□□□ -0.24
CCDC88C-209ENST00000554872 CADM1Q9BY67 442 aaKnown RBP13.53□□□□□ -0.24
CCDC88C-209ENST00000554872 MMADHCQ9H3L0 296 aaPredicted RBP13.53□□□□□ -0.24
CCDC88C-209ENST00000554872 TOR3AQ9H497 397 aa13.53□□□□□ -0.24
CCDC88C-209ENST00000554872 ZNF556Q9HAH1 456 aa13.53□□□□□ -0.24
CCDC88C-209ENST00000554872 PDP1Q9P0J1 537 aaPredicted RBP13.53□□□□□ -0.24
CCDC88C-209ENST00000554872 A8MXK9 166 aa13.52□□□□□ -0.25
CCDC88C-209ENST00000554872 F5H0A9 414 aaPredicted RBP13.52□□□□□ -0.25
CCDC88C-209ENST00000554872 H3BN98 237 aa13.52□□□□□ -0.25
CCDC88C-209ENST00000554872 TMEM178BH3BS89 294 aa13.52□□□□□ -0.25
CCDC88C-209ENST00000554872 ZNF593O00488 134 aaPredicted RBP13.52□□□□□ -0.25
CCDC88C-209ENST00000554872 PRODHO43272 600 aa13.52□□□□□ -0.25
CCDC88C-209ENST00000554872 PLPP2O43688 288 aa13.52□□□□□ -0.25
CCDC88C-209ENST00000554872 E2F6O75461 281 aa13.52□□□□□ -0.25
CCDC88C-209ENST00000554872 GLCEO94923 617 aa13.52□□□□□ -0.25
CCDC88C-209ENST00000554872 PTBP3O95758 552 aaKnown RBP13.52□□□□□ -0.25
CCDC88C-209ENST00000554872 LCATP04180 440 aa13.52□□□□□ -0.25
CCDC88C-209ENST00000554872 HMGN1P05114 100 aa13.52□□□□□ -0.25
CCDC88C-209ENST00000554872 GYPBP06028 91 aa13.52□□□□□ -0.25
CCDC88C-209ENST00000554872 CLUP10909 449 aa13.52□□□□□ -0.25
CCDC88C-209ENST00000554872 PAICSP22234 425 aaKnown RBP13.52□□□□□ -0.25
CCDC88C-209ENST00000554872 RPS27P42677 84 aaKnown RBP13.52□□□□□ -0.25
CCDC88C-209ENST00000554872 BTG1P62324 171 aa13.52□□□□□ -0.25
CCDC88C-209ENST00000554872 GRB2P62993 217 aaKnown RBP13.52□□□□□ -0.25
CCDC88C-209ENST00000554872 CDK5Q00535 292 aa13.52□□□□□ -0.25
CCDC88C-209ENST00000554872 SCGB2A2Q13296 93 aa13.52□□□□□ -0.25
CCDC88C-209ENST00000554872 SHQ1Q6PI26 577 aaKnown RBP13.52□□□□□ -0.25
CCDC88C-209ENST00000554872 PGAP1Q75T13 922 aa13.52□□□□□ -0.25
CCDC88C-209ENST00000554872 TIGD4Q8IY51 512 aa13.52□□□□□ -0.25
CCDC88C-209ENST00000554872 OR5AS1Q8N127 324 aa13.52□□□□□ -0.25
CCDC88C-209ENST00000554872 PARP8Q8N3A8 854 aa13.52□□□□□ -0.25
CCDC88C-209ENST00000554872 ZNF511Q8NB15 262 aa13.52□□□□□ -0.25
CCDC88C-209ENST00000554872 OR6K6Q8NGW6 343 aa13.52□□□□□ -0.25
CCDC88C-209ENST00000554872 Q8TCH9 128 aa13.52□□□□□ -0.25
CCDC88C-209ENST00000554872 SPSB4Q96A44 273 aa13.52□□□□□ -0.25
CCDC88C-209ENST00000554872 SLAMF6Q96DU3 332 aa13.52□□□□□ -0.25
CCDC88C-209ENST00000554872 NTN4Q9HB63 628 aa13.52□□□□□ -0.25
CCDC88C-209ENST00000554872 SLC25A19Q9HC21 320 aa13.52□□□□□ -0.25
CCDC88C-209ENST00000554872 TMEM100Q9NV29 134 aa13.52□□□□□ -0.25
CCDC88C-209ENST00000554872 DYSFO75923 2080 aa13.52□□□□□ -0.25
CCDC88C-209ENST00000554872 A0A0G2JMP0 313 aa13.51□□□□□ -0.25
CCDC88C-209ENST00000554872 A0A0X1KG70 313 aa13.51□□□□□ -0.25
CCDC88C-209ENST00000554872 SPARCP09486 303 aa13.51□□□□□ -0.25
CCDC88C-209ENST00000554872 SRP14P37108 136 aaKnown RBP13.51□□□□□ -0.25
CCDC88C-209ENST00000554872 MDH2P40926 338 aaKnown RBP13.51□□□□□ -0.25
CCDC88C-209ENST00000554872 CD200P41217 278 aa13.51□□□□□ -0.25
CCDC88C-209ENST00000554872 SLC15A1P46059 708 aa13.51□□□□□ -0.25
CCDC88C-209ENST00000554872 SNAI3Q3KNW1 292 aa13.51□□□□□ -0.25
CCDC88C-209ENST00000554872 FAHD1Q6P587 224 aa13.51□□□□□ -0.25
CCDC88C-209ENST00000554872 SHFQ7M4L6 423 aa13.51□□□□□ -0.25
CCDC88C-209ENST00000554872 MRPL21Q7Z2W9 205 aaKnown RBP13.51□□□□□ -0.25
CCDC88C-209ENST00000554872 NAA40Q86UY6 237 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms