RNA–Protein interactions for RNA: ENST00000553950.5

SHMT2-210, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-210ENST00000553950 NDUFB11Q9NX14 153 aa12.59□□□□□ -0.39
SHMT2-210ENST00000553950 ST6GALNAC2Q9UJ37 374 aa12.59□□□□□ -0.39
SHMT2-210ENST00000553950 OR52A1Q9UKL2 312 aa12.59□□□□□ -0.39
SHMT2-210ENST00000553950 SPTBN1Q01082 2364 aaKnown RBP12.59□□□□□ -0.39
SHMT2-210ENST00000553950 ANKHD1Q8IWZ3 2542 aaKnown RBP12.58□□□□□ -0.4
SHMT2-210ENST00000553950 IGHV1-18A0A0C4DH31 117 aa12.58□□□□□ -0.4
SHMT2-210ENST00000553950 A0A0U1RQV5 110 aa12.58□□□□□ -0.4
SHMT2-210ENST00000553950 M0R1B8 84 aa12.58□□□□□ -0.4
SHMT2-210ENST00000553950 NOL3O60936 208 aaKnown RBP12.58□□□□□ -0.4
SHMT2-210ENST00000553950 INMTO95050 263 aa12.58□□□□□ -0.4
SHMT2-210ENST00000553950 LCATP04180 440 aa12.58□□□□□ -0.4
SHMT2-210ENST00000553950 ISG15P05161 165 aa12.58□□□□□ -0.4
SHMT2-210ENST00000553950 CELP19835 753 aa12.58□□□□□ -0.4
SHMT2-210ENST00000553950 GALP22466 123 aa12.58□□□□□ -0.4
SHMT2-210ENST00000553950 CCNOP22674 350 aa12.58□□□□□ -0.4
SHMT2-210ENST00000553950 MAPK3P27361 379 aaPredicted RBP12.58□□□□□ -0.4
SHMT2-210ENST00000553950 ZNF83P51522 516 aa12.58□□□□□ -0.4
SHMT2-210ENST00000553950 GP2P55259 537 aaKnown RBP12.58□□□□□ -0.4
SHMT2-210ENST00000553950 MFGE8Q08431 387 aaPredicted RBP12.58□□□□□ -0.4
SHMT2-210ENST00000553950 TSTQ16762 297 aaKnown RBP12.58□□□□□ -0.4
SHMT2-210ENST00000553950 YIF1BQ5BJH7 314 aa12.58□□□□□ -0.4
SHMT2-210ENST00000553950 WDR38Q5JTN6 314 aa12.58□□□□□ -0.4
SHMT2-210ENST00000553950 TMEM244Q5VVB8 128 aa12.58□□□□□ -0.4
SHMT2-210ENST00000553950 WFDC8Q8IUA0 241 aa12.58□□□□□ -0.4
SHMT2-210ENST00000553950 ELMOD2Q8IZ81 293 aa12.58□□□□□ -0.4
SHMT2-210ENST00000553950 OR13F1Q8NGS4 319 aa12.58□□□□□ -0.4
SHMT2-210ENST00000553950 AKAP1Q92667 903 aaKnown RBP eCLIP12.58□□□□□ -0.4
SHMT2-210ENST00000553950 RADILQ96JH8 1075 aa12.58□□□□□ -0.4
SHMT2-210ENST00000553950 BCL2L14Q9BZR8 327 aa12.58□□□□□ -0.4
SHMT2-210ENST00000553950 PBOV1Q9GZY1 135 aa12.58□□□□□ -0.4
SHMT2-210ENST00000553950 GRIP1Q9Y3R0 1128 aa12.58□□□□□ -0.4
SHMT2-210ENST00000553950 LOC100509620A0A075B734 347 aa12.57□□□□□ -0.4
SHMT2-210ENST00000553950 A0A1B0GVI7 797 aa12.57□□□□□ -0.4
SHMT2-210ENST00000553950 WIPF3A6NGB9 483 aa12.57□□□□□ -0.4
SHMT2-210ENST00000553950 CASKO14936 926 aa12.57□□□□□ -0.4
SHMT2-210ENST00000553950 MAGEB4O15481 346 aaPredicted RBP12.57□□□□□ -0.4
SHMT2-210ENST00000553950 MTRF1O75570 445 aaKnown RBP12.57□□□□□ -0.4
SHMT2-210ENST00000553950 LALBAP00709 142 aa12.57□□□□□ -0.4
SHMT2-210ENST00000553950 DBHP09172 617 aa12.57□□□□□ -0.4
SHMT2-210ENST00000553950 ACHEP22303 614 aa12.57□□□□□ -0.4
SHMT2-210ENST00000553950 PSMB10P40306 273 aa12.57□□□□□ -0.4
SHMT2-210ENST00000553950 RAD52P43351 418 aa12.57□□□□□ -0.4
SHMT2-210ENST00000553950 NAAAQ02083 359 aa12.57□□□□□ -0.4
SHMT2-210ENST00000553950 BEX5Q5H9J7 111 aa12.57□□□□□ -0.4
SHMT2-210ENST00000553950 LIPKQ5VXJ0 399 aa12.57□□□□□ -0.4
SHMT2-210ENST00000553950 COLCA1Q6ZS62 124 aa12.57□□□□□ -0.4
SHMT2-210ENST00000553950 FAM57BQ71RH2 274 aa12.57□□□□□ -0.4
SHMT2-210ENST00000553950 COMMD2Q86X83 199 aa12.57□□□□□ -0.4
SHMT2-210ENST00000553950 PHC2Q8IXK0 858 aa12.57□□□□□ -0.4
SHMT2-210ENST00000553950 OR8B12Q8NGG6 310 aa12.57□□□□□ -0.4
SHMT2-210ENST00000553950 MS4A3Q96HJ5 214 aa12.57□□□□□ -0.4
SHMT2-210ENST00000553950 G6PC2Q9NQR9 355 aa12.57□□□□□ -0.4
SHMT2-210ENST00000553950 NDUFA13Q9P0J0 144 aa12.57□□□□□ -0.4
SHMT2-210ENST00000553950 ZNF281Q9Y2X9 895 aa12.57□□□□□ -0.4
SHMT2-210ENST00000553950 CHD6Q8TD26 2715 aa12.57□□□□□ -0.4
SHMT2-210ENST00000553950 IGHV2OR16-5A0A0B4J2B6 119 aa12.56□□□□□ -0.4
SHMT2-210ENST00000553950 OR4C45A6NMZ5 311 aa12.56□□□□□ -0.4
SHMT2-210ENST00000553950 DHRS7CA6NNS2 312 aa12.56□□□□□ -0.4
SHMT2-210ENST00000553950 TBX1O43435 398 aa12.56□□□□□ -0.4
SHMT2-210ENST00000553950 PNPP00491 289 aa12.56□□□□□ -0.4
SHMT2-210ENST00000553950 HLA-DPB1P04440 258 aa12.56□□□□□ -0.4
SHMT2-210ENST00000553950 CD2P06729 351 aa12.56□□□□□ -0.4
SHMT2-210ENST00000553950 CD40P25942 277 aa12.56□□□□□ -0.4
SHMT2-210ENST00000553950 GTF2A1P52655 376 aaPredicted RBP12.56□□□□□ -0.4
SHMT2-210ENST00000553950 SLC3A1Q07837 685 aa12.56□□□□□ -0.4
SHMT2-210ENST00000553950 CDSNQ15517 529 aa12.56□□□□□ -0.4
SHMT2-210ENST00000553950 PAMR1Q6UXH9 720 aa12.56□□□□□ -0.4
SHMT2-210ENST00000553950 DOK3Q7L591 496 aa12.56□□□□□ -0.4
SHMT2-210ENST00000553950 PRSS45Q7RTY3 260 aa12.56□□□□□ -0.4
SHMT2-210ENST00000553950 GPR148Q8TDV2 347 aa12.56□□□□□ -0.4
SHMT2-210ENST00000553950 FAM222BQ8WU58 562 aa12.56□□□□□ -0.4
SHMT2-210ENST00000553950 SLC7A6Q92536 515 aa12.56□□□□□ -0.4
SHMT2-210ENST00000553950 ZC3HAV1LQ96H79 300 aaKnown RBP12.56□□□□□ -0.4
SHMT2-210ENST00000553950 PGLYRP3Q96LB9 341 aa12.56□□□□□ -0.4
SHMT2-210ENST00000553950 WFIKKN1Q96NZ8 548 aa12.56□□□□□ -0.4
SHMT2-210ENST00000553950 BCL7BQ9BQE9 202 aa12.56□□□□□ -0.4
SHMT2-210ENST00000553950 BRD7Q9NPI1 651 aa12.56□□□□□ -0.4
SHMT2-210ENST00000553950 NPDC1Q9NQX5 325 aaPredicted RBP12.56□□□□□ -0.4
SHMT2-210ENST00000553950 BATF3Q9NR55 127 aa12.56□□□□□ -0.4
SHMT2-210ENST00000553950 NPAP1Q9NZP6 1156 aa12.56□□□□□ -0.4
SHMT2-210ENST00000553950 FRRS1LQ9P0K9 344 aa12.56□□□□□ -0.4
SHMT2-210ENST00000553950 HHLA2Q9UM44 414 aa12.56□□□□□ -0.4
SHMT2-210ENST00000553950 DOPEY1Q5JWR5 2465 aa12.55□□□□□ -0.4
SHMT2-210ENST00000553950 PNMA8CA0A1B0GUJ8 204 aa12.55□□□□□ -0.4
SHMT2-210ENST00000553950 LOC107986453A0A1B0GWG9 222 aa12.55□□□□□ -0.4
SHMT2-210ENST00000553950 LOC390937A0A1W2PQ73 354 aa12.55□□□□□ -0.4
SHMT2-210ENST00000553950 E9PI62 339 aa12.55□□□□□ -0.4
SHMT2-210ENST00000553950 SMPD2O60906 423 aa12.55□□□□□ -0.4
SHMT2-210ENST00000553950 GATBO75879 557 aaKnown RBP12.55□□□□□ -0.4
SHMT2-210ENST00000553950 RGS9O75916 674 aaPredicted RBP12.55□□□□□ -0.4
SHMT2-210ENST00000553950 ZFPL1O95159 310 aa12.55□□□□□ -0.4
SHMT2-210ENST00000553950 TTRP02766 147 aa12.55□□□□□ -0.4
SHMT2-210ENST00000553950 THBDP07204 575 aa12.55□□□□□ -0.4
SHMT2-210ENST00000553950 CELA3BP08861 270 aa12.55□□□□□ -0.4
SHMT2-210ENST00000553950 ZNF35P13682 527 aa12.55□□□□□ -0.4
SHMT2-210ENST00000553950 CD36P16671 472 aa12.55□□□□□ -0.4
SHMT2-210ENST00000553950 KIR2DL3P43628 341 aa12.55□□□□□ -0.4
SHMT2-210ENST00000553950 KIR3DL2P43630 455 aa12.55□□□□□ -0.4
SHMT2-210ENST00000553950 NANOS3P60323 173 aaKnown RBP12.55□□□□□ -0.4
SHMT2-210ENST00000553950 RSPO1Q2MKA7 263 aaPredicted RBP12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms