RNA–Protein interactions for RNA: ENST00000550872.1

CHMP1A-209, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2

Gene CHMP1A, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-209ENST00000550872 TTTY10Q9BZA0 68 aa13.91□□□□□ -0.18
CHMP1A-209ENST00000550872 VCX3BQ9H321 246 aa13.91□□□□□ -0.18
CHMP1A-209ENST00000550872 SLCO1C1Q9NYB5 712 aa13.91□□□□□ -0.18
CHMP1A-209ENST00000550872 PTTG3PQ9NZH4 202 aa13.91□□□□□ -0.18
CHMP1A-209ENST00000550872 GPR160Q9UJ42 338 aa13.91□□□□□ -0.18
CHMP1A-209ENST00000550872 SETD2Q9BYW2 2564 aaPredicted RBP13.9□□□□□ -0.18
CHMP1A-209ENST00000550872 H0YAE9 185 aa13.9□□□□□ -0.18
CHMP1A-209ENST00000550872 H3BSA7 217 aa13.9□□□□□ -0.18
CHMP1A-209ENST00000550872 PSMD9O00233 223 aa13.9□□□□□ -0.18
CHMP1A-209ENST00000550872 PHYHO14832 338 aa13.9□□□□□ -0.18
CHMP1A-209ENST00000550872 NDUFS7O75251 213 aa13.9□□□□□ -0.18
CHMP1A-209ENST00000550872 IGHV3-13P01766 116 aa13.9□□□□□ -0.18
CHMP1A-209ENST00000550872 ANXA2P07355 339 aaKnown RBP13.9□□□□□ -0.18
CHMP1A-209ENST00000550872 SLC2A1P11166 492 aa13.9□□□□□ -0.18
CHMP1A-209ENST00000550872 CX3CR1P49238 355 aa13.9□□□□□ -0.18
CHMP1A-209ENST00000550872 PPOXP50336 477 aa13.9□□□□□ -0.18
CHMP1A-209ENST00000550872 CXCR4P61073 352 aa13.9□□□□□ -0.18
CHMP1A-209ENST00000550872 MALLQ13021 153 aa13.9□□□□□ -0.18
CHMP1A-209ENST00000550872 ALKBH6Q3KRA9 238 aa13.9□□□□□ -0.18
CHMP1A-209ENST00000550872 OR10H4Q8NGA5 316 aa13.9□□□□□ -0.18
CHMP1A-209ENST00000550872 TBX5Q99593 518 aa13.9□□□□□ -0.18
CHMP1A-209ENST00000550872 MROQ9BYG7 248 aa13.9□□□□□ -0.18
CHMP1A-209ENST00000550872 MS4A5Q9H3V2 200 aa13.9□□□□□ -0.18
CHMP1A-209ENST00000550872 NIPAL2Q9H841 368 aa13.9□□□□□ -0.18
CHMP1A-209ENST00000550872 SP140LQ9H930 580 aa13.9□□□□□ -0.18
CHMP1A-209ENST00000550872 AMBNQ9NP70 447 aa13.9□□□□□ -0.18
CHMP1A-209ENST00000550872 IKZF2Q9UKS7 526 aa13.9□□□□□ -0.18
CHMP1A-209ENST00000550872 ZFHX3Q15911 3703 aa13.89□□□□□ -0.19
CHMP1A-209ENST00000550872 H0YJX3 145 aa13.89□□□□□ -0.19
CHMP1A-209ENST00000550872 OR2T7P0C7T2 308 aa13.89□□□□□ -0.19
CHMP1A-209ENST00000550872 RAC2P15153 192 aa13.89□□□□□ -0.19
CHMP1A-209ENST00000550872 AQP4P55087 323 aa13.89□□□□□ -0.19
CHMP1A-209ENST00000550872 PSG7Q13046 419 aa13.89□□□□□ -0.19
CHMP1A-209ENST00000550872 IL18R1Q13478 541 aa13.89□□□□□ -0.19
CHMP1A-209ENST00000550872 HLXQ14774 488 aaPredicted RBP13.89□□□□□ -0.19
CHMP1A-209ENST00000550872 DEGS2Q6QHC5 323 aa13.89□□□□□ -0.19
CHMP1A-209ENST00000550872 ZNF322Q6U7Q0 402 aaPredicted RBP13.89□□□□□ -0.19
CHMP1A-209ENST00000550872 FBXW12Q6X9E4 464 aa13.89□□□□□ -0.19
CHMP1A-209ENST00000550872 ZCCHC24Q8N2G6 241 aaKnown RBP13.89□□□□□ -0.19
CHMP1A-209ENST00000550872 RFLNBQ8N5W9 214 aa13.89□□□□□ -0.19
CHMP1A-209ENST00000550872 OR2T27Q8NH04 317 aa13.89□□□□□ -0.19
CHMP1A-209ENST00000550872 SNX33Q8WV41 574 aa13.89□□□□□ -0.19
CHMP1A-209ENST00000550872 APH1BQ8WW43 257 aa13.89□□□□□ -0.19
CHMP1A-209ENST00000550872 HAVCR1Q96D42 359 aa13.89□□□□□ -0.19
CHMP1A-209ENST00000550872 OR8B4Q96RC9 309 aa13.89□□□□□ -0.19
CHMP1A-209ENST00000550872 RAB1BQ9H0U4 201 aa13.89□□□□□ -0.19
CHMP1A-209ENST00000550872 CXXC4Q9H2H0 198 aa13.89□□□□□ -0.19
CHMP1A-209ENST00000550872 BRD7Q9NPI1 651 aa13.89□□□□□ -0.19
CHMP1A-209ENST00000550872 LRP12Q9Y561 859 aa13.89□□□□□ -0.19
CHMP1A-209ENST00000550872 MTORP42345 2549 aa13.88□□□□□ -0.19
CHMP1A-209ENST00000550872 A0A1W2PQL4 384 aaPredicted RBP13.88□□□□□ -0.19
CHMP1A-209ENST00000550872 PRR32B1ATL7 298 aa13.88□□□□□ -0.19
CHMP1A-209ENST00000550872 TBX1O43435 398 aa13.88□□□□□ -0.19
CHMP1A-209ENST00000550872 TIMM8AO60220 97 aaPredicted RBP13.88□□□□□ -0.19
CHMP1A-209ENST00000550872 ZNF254O75437 659 aa13.88□□□□□ -0.19
CHMP1A-209ENST00000550872 IGHV4-39P01824 125 aa13.88□□□□□ -0.19
CHMP1A-209ENST00000550872 MT-ND5P03915 603 aa13.88□□□□□ -0.19
CHMP1A-209ENST00000550872 ERCC1P07992 297 aaPredicted RBP13.88□□□□□ -0.19
CHMP1A-209ENST00000550872 ZNF121P58317 390 aaPredicted RBP13.88□□□□□ -0.19
CHMP1A-209ENST00000550872 ROM1Q03395 351 aa13.88□□□□□ -0.19
CHMP1A-209ENST00000550872 ZNF91Q05481 1191 aa13.88□□□□□ -0.19
CHMP1A-209ENST00000550872 SNAI3Q3KNW1 292 aa13.88□□□□□ -0.19
CHMP1A-209ENST00000550872 FAM57BQ71RH2 274 aa13.88□□□□□ -0.19
CHMP1A-209ENST00000550872 ZNF679Q8IYX0 411 aa13.88□□□□□ -0.19
CHMP1A-209ENST00000550872 C8orf59Q8N0T1 100 aaPredicted RBP13.88□□□□□ -0.19
CHMP1A-209ENST00000550872 CNIH3Q8TBE1 160 aa13.88□□□□□ -0.19
CHMP1A-209ENST00000550872 TFAP2CQ92754 450 aa13.88□□□□□ -0.19
CHMP1A-209ENST00000550872 SORCS2Q96PQ0 1159 aa13.88□□□□□ -0.19
CHMP1A-209ENST00000550872 TPK1Q9H3S4 243 aa13.88□□□□□ -0.19
CHMP1A-209ENST00000550872 BARX1Q9HBU1 254 aaPredicted RBP13.88□□□□□ -0.19
CHMP1A-209ENST00000550872 PURGQ9UJV8 347 aaKnown RBP13.88□□□□□ -0.19
CHMP1A-209ENST00000550872 RPL36Q9Y3U8 105 aaKnown RBP13.88□□□□□ -0.19
CHMP1A-209ENST00000550872 HSPE1-MOB4S4R3N1 261 aa13.88□□□□□ -0.19
CHMP1A-209ENST00000550872 PLSCR5A0PG75 271 aa13.87□□□□□ -0.19
CHMP1A-209ENST00000550872 C5orf63A6NC05 138 aa13.87□□□□□ -0.19
CHMP1A-209ENST00000550872 MAGEB4O15481 346 aaPredicted RBP13.87□□□□□ -0.19
CHMP1A-209ENST00000550872 WBP4O75554 376 aaKnown RBP13.87□□□□□ -0.19
CHMP1A-209ENST00000550872 GNAO1P09471 354 aa13.87□□□□□ -0.19
CHMP1A-209ENST00000550872 DBTP11182 482 aaKnown RBP13.87□□□□□ -0.19
CHMP1A-209ENST00000550872 NAT2P11245 290 aa13.87□□□□□ -0.19
CHMP1A-209ENST00000550872 KITLGP21583 273 aa13.87□□□□□ -0.19
CHMP1A-209ENST00000550872 RIDAP52758 137 aaKnown RBP13.87□□□□□ -0.19
CHMP1A-209ENST00000550872 EFNA4P52798 201 aa13.87□□□□□ -0.19
CHMP1A-209ENST00000550872 ISL1P61371 349 aa13.87□□□□□ -0.19
CHMP1A-209ENST00000550872 SMN1Q16637 294 aaKnown RBP13.87□□□□□ -0.19
CHMP1A-209ENST00000550872 TMEM255AQ5JRV8 349 aa13.87□□□□□ -0.19
CHMP1A-209ENST00000550872 Q5PR19 223 aa13.87□□□□□ -0.19
CHMP1A-209ENST00000550872 SHEQ5VZ18 495 aa13.87□□□□□ -0.19
CHMP1A-209ENST00000550872 OR2T2Q6IF00 324 aa13.87□□□□□ -0.19
CHMP1A-209ENST00000550872 USP51Q70EK9 711 aa13.87□□□□□ -0.19
CHMP1A-209ENST00000550872 MRPL21Q7Z2W9 205 aaKnown RBP13.87□□□□□ -0.19
CHMP1A-209ENST00000550872 LGALS12Q96DT0 336 aa13.87□□□□□ -0.19
CHMP1A-209ENST00000550872 PGAM5Q96HS1 289 aa13.87□□□□□ -0.19
CHMP1A-209ENST00000550872 EXOGQ9Y2C4 368 aaKnown RBP13.87□□□□□ -0.19
CHMP1A-209ENST00000550872 PCDHGB1Q9Y5G3 927 aa13.87□□□□□ -0.19
CHMP1A-209ENST00000550872 NF1P21359 2839 aa13.86□□□□□ -0.19
CHMP1A-209ENST00000550872 DAPL1A0PJW8 107 aa13.86□□□□□ -0.19
CHMP1A-209ENST00000550872 XRCC2O43543 280 aa13.86□□□□□ -0.19
CHMP1A-209ENST00000550872 SSX4O60224 188 aa13.86□□□□□ -0.19
CHMP1A-209ENST00000550872 F12P00748 615 aaPredicted RBP13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms