RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 OR52W1Q6IF63 320 aa13.46□□□□□ -0.25
CUX1-214ENST00000550008 D2HGDHQ8N465 521 aa13.46□□□□□ -0.25
CUX1-214ENST00000550008 TRAPPC4Q9Y296 219 aa13.46□□□□□ -0.25
CUX1-214ENST00000550008 AKAP6Q13023 2319 aa13.46□□□□□ -0.25
CUX1-214ENST00000550008 NGFRP08138 427 aa13.46□□□□□ -0.26
CUX1-214ENST00000550008 OR8U9P0C7N5 309 aa13.46□□□□□ -0.26
CUX1-214ENST00000550008 LINC00271P0C7V0 271 aa13.46□□□□□ -0.26
CUX1-214ENST00000550008 SLC25A1P53007 311 aa13.46□□□□□ -0.26
CUX1-214ENST00000550008 STX12Q86Y82 276 aa13.46□□□□□ -0.26
CUX1-214ENST00000550008 ZNF695Q8IW36 515 aa13.46□□□□□ -0.26
CUX1-214ENST00000550008 RRNAD1Q96FB5 475 aaKnown RBP13.46□□□□□ -0.26
CUX1-214ENST00000550008 PCED1AQ9H1Q7 454 aa13.46□□□□□ -0.26
CUX1-214ENST00000550008 MASP2O00187 686 aa13.46□□□□□ -0.26
CUX1-214ENST00000550008 ZNF254O75437 659 aa13.46□□□□□ -0.26
CUX1-214ENST00000550008 EPPINO95925 133 aa13.46□□□□□ -0.26
CUX1-214ENST00000550008 INHBBP09529 407 aa13.46□□□□□ -0.26
CUX1-214ENST00000550008 OMGP23515 440 aa13.46□□□□□ -0.26
CUX1-214ENST00000550008 MPLP40238 635 aa13.46□□□□□ -0.26
CUX1-214ENST00000550008 RGS19P49795 217 aa13.46□□□□□ -0.26
CUX1-214ENST00000550008 RIPPLY1Q0D2K3 151 aa13.46□□□□□ -0.26
CUX1-214ENST00000550008 PCK2Q16822 640 aa13.46□□□□□ -0.26
CUX1-214ENST00000550008 ADGRG3Q86Y34 549 aa13.46□□□□□ -0.26
CUX1-214ENST00000550008 FBLIM1Q8WUP2 373 aa13.46□□□□□ -0.26
CUX1-214ENST00000550008 SARGQ9BW04 601 aa13.46□□□□□ -0.26
CUX1-214ENST00000550008 PDGFBP01127 241 aaPredicted RBP13.45□□□□□ -0.26
CUX1-214ENST00000550008 CDONQ4KMG0 1287 aa13.45□□□□□ -0.26
CUX1-214ENST00000550008 TINAGL1Q9GZM7 467 aaPredicted RBP13.45□□□□□ -0.26
CUX1-214ENST00000550008 DSPPQ9NZW4 1301 aa13.45□□□□□ -0.26
CUX1-214ENST00000550008 ZNF587BE7ETH6 402 aa13.45□□□□□ -0.26
CUX1-214ENST00000550008 PYCARD-AS1I3L0S3 204 aa13.45□□□□□ -0.26
CUX1-214ENST00000550008 PLPP3O14495 311 aa13.45□□□□□ -0.26
CUX1-214ENST00000550008 LANCL1O43813 399 aa13.45□□□□□ -0.26
CUX1-214ENST00000550008 NAT1P18440 290 aa13.45□□□□□ -0.26
CUX1-214ENST00000550008 HOXD11P31277 338 aaPredicted RBP13.45□□□□□ -0.26
CUX1-214ENST00000550008 GRB2P62993 217 aaKnown RBP13.45□□□□□ -0.26
CUX1-214ENST00000550008 CYCSP99999 105 aaKnown RBP13.45□□□□□ -0.26
CUX1-214ENST00000550008 PGAP1Q75T13 922 aa13.45□□□□□ -0.26
CUX1-214ENST00000550008 RASL10BQ96S79 203 aa13.45□□□□□ -0.26
CUX1-214ENST00000550008 ZCCHC4Q9H5U6 513 aa13.45□□□□□ -0.26
CUX1-214ENST00000550008 FRRS1LQ9P0K9 344 aa13.45□□□□□ -0.26
CUX1-214ENST00000550008 COL4A6Q14031 1691 aa13.45□□□□□ -0.26
CUX1-214ENST00000550008 TCRBV16S1A1N1A0A5B0 115 aa13.45□□□□□ -0.26
CUX1-214ENST00000550008 H3BMH7 237 aa13.45□□□□□ -0.26
CUX1-214ENST00000550008 IGHEP01854 428 aa13.45□□□□□ -0.26
CUX1-214ENST00000550008 TAS2R31P59538 309 aa13.45□□□□□ -0.26
CUX1-214ENST00000550008 LANCL2Q9NS86 450 aa13.45□□□□□ -0.26
CUX1-214ENST00000550008 P4HTMQ9NXG6 502 aa13.45□□□□□ -0.26
CUX1-214ENST00000550008 LSM2Q9Y333 95 aaKnown RBP13.45□□□□□ -0.26
CUX1-214ENST00000550008 TCF20Q9UGU0 1960 aaKnown RBP13.44□□□□□ -0.26
CUX1-214ENST00000550008 WDR87Q6ZQQ6 2873 aa13.44□□□□□ -0.26
CUX1-214ENST00000550008 PLA2G10O15496 165 aa13.44□□□□□ -0.26
CUX1-214ENST00000550008 SSX5O60225 188 aa13.44□□□□□ -0.26
CUX1-214ENST00000550008 SERPINE2P07093 398 aa13.44□□□□□ -0.26
CUX1-214ENST00000550008 CELA2AP08217 269 aa13.44□□□□□ -0.26
CUX1-214ENST00000550008 ADH6P28332 368 aa13.44□□□□□ -0.26
CUX1-214ENST00000550008 CEACAM16Q2WEN9 425 aa13.44□□□□□ -0.26
CUX1-214ENST00000550008 DOK3Q7L591 496 aa13.44□□□□□ -0.26
CUX1-214ENST00000550008 FAM109AQ8N4B1 249 aa13.44□□□□□ -0.26
CUX1-214ENST00000550008 SEMA6DQ8NFY4 1073 aa13.44□□□□□ -0.26
CUX1-214ENST00000550008 OR51A2Q8NGJ7 313 aa13.44□□□□□ -0.26
CUX1-214ENST00000550008 DOCK9Q9BZ29 2069 aa13.44□□□□□ -0.26
CUX1-214ENST00000550008 SLC17A2O00624 439 aa13.44□□□□□ -0.26
CUX1-214ENST00000550008 FADS1O60427 444 aa13.44□□□□□ -0.26
CUX1-214ENST00000550008 NXPH3O95157 252 aa13.44□□□□□ -0.26
CUX1-214ENST00000550008 VAMP5O95183 116 aa13.44□□□□□ -0.26
CUX1-214ENST00000550008 HRH1P35367 487 aa13.44□□□□□ -0.26
CUX1-214ENST00000550008 DMWDQ09019 674 aa13.44□□□□□ -0.26
CUX1-214ENST00000550008 OGFOD3Q6PK18 319 aa13.44□□□□□ -0.26
CUX1-214ENST00000550008 SUMF1Q8NBK3 374 aa13.44□□□□□ -0.26
CUX1-214ENST00000550008 OR2AE1Q8NHA4 323 aa13.44□□□□□ -0.26
CUX1-214ENST00000550008 ZNF285Q96NJ3 590 aa13.44□□□□□ -0.26
CUX1-214ENST00000550008 FAM86C1Q9NVL1 165 aa13.44□□□□□ -0.26
CUX1-214ENST00000550008 FBXO4Q9UKT5 387 aa13.44□□□□□ -0.26
CUX1-214ENST00000550008 TRAV8-7A0A075B6U6 113 aa13.44□□□□□ -0.26
CUX1-214ENST00000550008 THY1P04216 161 aa13.44□□□□□ -0.26
CUX1-214ENST00000550008 FBXW12Q6X9E4 464 aa13.44□□□□□ -0.26
CUX1-214ENST00000550008 HRH4Q9H3N8 390 aa13.44□□□□□ -0.26
CUX1-214ENST00000550008 CRLF2Q9HC73 371 aa13.44□□□□□ -0.26
CUX1-214ENST00000550008 ZNF814B7Z6K7 855 aa13.43□□□□□ -0.26
CUX1-214ENST00000550008 GMDSO60547 372 aa13.43□□□□□ -0.26
CUX1-214ENST00000550008 HAGHLQ6PII5 290 aaPredicted RBP13.43□□□□□ -0.26
CUX1-214ENST00000550008 TRILQ7L0X0 811 aa13.43□□□□□ -0.26
CUX1-214ENST00000550008 PSMF1Q92530 271 aa13.43□□□□□ -0.26
CUX1-214ENST00000550008 APH1AQ96BI3 265 aa13.43□□□□□ -0.26
CUX1-214ENST00000550008 FER1L6-AS2Q96M78 137 aa13.43□□□□□ -0.26
CUX1-214ENST00000550008 DUSP13Q9UII6 198 aa13.43□□□□□ -0.26
CUX1-214ENST00000550008 KLHDC2Q9Y2U9 406 aa13.43□□□□□ -0.26
CUX1-214ENST00000550008 PTP4A3O75365 173 aa13.43□□□□□ -0.26
CUX1-214ENST00000550008 SMIM10L1P0DMW3 83 aa13.43□□□□□ -0.26
CUX1-214ENST00000550008 NANOS3P60323 173 aaKnown RBP13.43□□□□□ -0.26
CUX1-214ENST00000550008 SNRPNP63162 240 aaKnown RBP13.43□□□□□ -0.26
CUX1-214ENST00000550008 SMIM10Q96HG1 83 aa13.43□□□□□ -0.26
CUX1-214ENST00000550008 GLTPQ9NZD2 209 aa13.43□□□□□ -0.26
CUX1-214ENST00000550008 PI4KAP42356 2102 aa13.43□□□□□ -0.26
CUX1-214ENST00000550008 EFSO43281 561 aa13.43□□□□□ -0.26
CUX1-214ENST00000550008 IL11P20809 199 aa13.43□□□□□ -0.26
CUX1-214ENST00000550008 MMP15P51511 669 aa13.43□□□□□ -0.26
CUX1-214ENST00000550008 LUMP51884 338 aaPredicted RBP13.43□□□□□ -0.26
CUX1-214ENST00000550008 C1orf210Q8IVY1 113 aa13.43□□□□□ -0.26
CUX1-214ENST00000550008 MED30Q96HR3 178 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms