RNA–Protein interactions for RNA: ENST00000540669.1

VPS33A-204, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 455 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-204ENST00000540669 CALCRP30988 508 aa9.11□□□□□ -0.95
VPS33A-204ENST00000540669 TGFBR2P37173 567 aa9.11□□□□□ -0.95
VPS33A-204ENST00000540669 RIDAP52758 137 aaKnown RBP9.11□□□□□ -0.95
VPS33A-204ENST00000540669 SPHARQ15513 63 aa9.11□□□□□ -0.95
VPS33A-204ENST00000540669 WDR38Q5JTN6 314 aa9.11□□□□□ -0.95
VPS33A-204ENST00000540669 NCMAPQ5T1S8 102 aa9.11□□□□□ -0.95
VPS33A-204ENST00000540669 KRT77Q7Z794 578 aa9.11□□□□□ -0.95
VPS33A-204ENST00000540669 ALDH16A1Q8IZ83 802 aa9.11□□□□□ -0.95
VPS33A-204ENST00000540669 OR2G2Q8NGZ5 317 aa9.11□□□□□ -0.95
VPS33A-204ENST00000540669 MUCL1Q96DR8 90 aa9.11□□□□□ -0.95
VPS33A-204ENST00000540669 MRPL48Q96GC5 212 aaKnown RBP9.11□□□□□ -0.95
VPS33A-204ENST00000540669 MYCBPQ99417 103 aaPredicted RBP9.11□□□□□ -0.95
VPS33A-204ENST00000540669 SPOCK3Q9BQ16 436 aa9.11□□□□□ -0.95
VPS33A-204ENST00000540669 CDADC1Q9BWV3 514 aa9.11□□□□□ -0.95
VPS33A-204ENST00000540669 MRPS26Q9BYN8 205 aaKnown RBP9.11□□□□□ -0.95
VPS33A-204ENST00000540669 KCNN2Q9H2S1 579 aa9.11□□□□□ -0.95
VPS33A-204ENST00000540669 TBCCD1Q9NVR7 557 aa9.11□□□□□ -0.95
VPS33A-204ENST00000540669 BABAM2Q9NXR7 383 aa9.11□□□□□ -0.95
VPS33A-204ENST00000540669 ERGIC3Q9Y282 383 aa9.11□□□□□ -0.95
VPS33A-204ENST00000540669 GRIP1Q9Y3R0 1128 aa9.11□□□□□ -0.95
VPS33A-204ENST00000540669 HEATR1Q9H583 2144 aaKnown RBP9.11□□□□□ -0.95
VPS33A-204ENST00000540669 A0A1B0GTI1 187 aa9.1□□□□□ -0.95
VPS33A-204ENST00000540669 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP9.1□□□□□ -0.95
VPS33A-204ENST00000540669 A0A1B0GWJ7 208 aa9.1□□□□□ -0.95
VPS33A-204ENST00000540669 H3BSA7 217 aa9.1□□□□□ -0.95
VPS33A-204ENST00000540669 PSMD9O00233 223 aa9.1□□□□□ -0.95
VPS33A-204ENST00000540669 PLPP2O43688 288 aa9.1□□□□□ -0.95
VPS33A-204ENST00000540669 APOC1P02654 83 aa9.1□□□□□ -0.95
VPS33A-204ENST00000540669 TTRP02766 147 aa9.1□□□□□ -0.95
VPS33A-204ENST00000540669 ISG15P05161 165 aa9.1□□□□□ -0.95
VPS33A-204ENST00000540669 H2BFMP0C1H6 154 aa9.1□□□□□ -0.95
VPS33A-204ENST00000540669 CD53P19397 219 aa9.1□□□□□ -0.95
VPS33A-204ENST00000540669 EEF1B2P24534 225 aaKnown RBP9.1□□□□□ -0.95
VPS33A-204ENST00000540669 PTAFRP25105 342 aa9.1□□□□□ -0.95
VPS33A-204ENST00000540669 CX3CR1P49238 355 aa9.1□□□□□ -0.95
VPS33A-204ENST00000540669 RGS6P49758 472 aa9.1□□□□□ -0.95
VPS33A-204ENST00000540669 ZNF121P58317 390 aaPredicted RBP9.1□□□□□ -0.95
VPS33A-204ENST00000540669 TAS2R43P59537 309 aa9.1□□□□□ -0.95
VPS33A-204ENST00000540669 RPS11P62280 158 aaKnown RBP eCLIP9.1□□□□□ -0.95
VPS33A-204ENST00000540669 PLP2Q04941 152 aa9.1□□□□□ -0.95
VPS33A-204ENST00000540669 SPOCK1Q08629 439 aa9.1□□□□□ -0.95
VPS33A-204ENST00000540669 GPR50Q13585 617 aa9.1□□□□□ -0.95
VPS33A-204ENST00000540669 DAZAP2Q15038 168 aaPredicted RBP9.1□□□□□ -0.95
VPS33A-204ENST00000540669 SSX1Q16384 188 aa9.1□□□□□ -0.95
VPS33A-204ENST00000540669 ZNF829Q3KNS6 432 aaPredicted RBP9.1□□□□□ -0.95
VPS33A-204ENST00000540669 SNAI3Q3KNW1 292 aa9.1□□□□□ -0.95
VPS33A-204ENST00000540669 TMEM255AQ5JRV8 349 aa9.1□□□□□ -0.95
VPS33A-204ENST00000540669 TMEM154Q6P9G4 183 aa9.1□□□□□ -0.95
VPS33A-204ENST00000540669 CD200R1LQ6Q8B3 271 aa9.1□□□□□ -0.95
VPS33A-204ENST00000540669 TMPRSS11AQ6ZMR5 421 aa9.1□□□□□ -0.95
VPS33A-204ENST00000540669 MEX3BQ6ZN04 569 aaKnown RBP9.1□□□□□ -0.95
VPS33A-204ENST00000540669 ELMOD2Q8IZ81 293 aa9.1□□□□□ -0.95
VPS33A-204ENST00000540669 NUP37Q8NFH4 326 aa9.1□□□□□ -0.95
VPS33A-204ENST00000540669 OR8B12Q8NGG6 310 aa9.1□□□□□ -0.95
VPS33A-204ENST00000540669 FAM222BQ8WU58 562 aa9.1□□□□□ -0.95
VPS33A-204ENST00000540669 SNX33Q8WV41 574 aa9.1□□□□□ -0.95
VPS33A-204ENST00000540669 ITFG2Q969R8 447 aa9.1□□□□□ -0.95
VPS33A-204ENST00000540669 SPTSSAQ969W0 71 aa9.1□□□□□ -0.95
VPS33A-204ENST00000540669 SMIM19Q96E16 107 aa9.1□□□□□ -0.95
VPS33A-204ENST00000540669 TRIM36Q9NQ86 728 aa9.1□□□□□ -0.95
VPS33A-204ENST00000540669 CRIM1Q9NZV1 1036 aa9.1□□□□□ -0.95
VPS33A-204ENST00000540669 FRRS1LQ9P0K9 344 aa9.1□□□□□ -0.95
VPS33A-204ENST00000540669 GNG8Q9UK08 70 aa9.1□□□□□ -0.95
VPS33A-204ENST00000540669 IKZF2Q9UKS7 526 aa9.1□□□□□ -0.95
VPS33A-204ENST00000540669 EDARQ9UNE0 448 aa9.1□□□□□ -0.95
VPS33A-204ENST00000540669 SF3B6Q9Y3B4 125 aaKnown RBP9.1□□□□□ -0.95
VPS33A-204ENST00000540669 HECTD1Q9ULT8 2610 aa9.09□□□□□ -0.95
VPS33A-204ENST00000540669 ABCA12Q86UK0 2595 aa9.09□□□□□ -0.95
VPS33A-204ENST00000540669 IQCMA0A1B0GVH7 501 aa9.09□□□□□ -0.95
VPS33A-204ENST00000540669 LOC390937A0A1W2PQ73 354 aa9.09□□□□□ -0.95
VPS33A-204ENST00000540669 TUBAL3A6NHL2 446 aa9.09□□□□□ -0.95
VPS33A-204ENST00000540669 SHISA9B4DS77 424 aa9.09□□□□□ -0.95
VPS33A-204ENST00000540669 INMTO95050 263 aa9.09□□□□□ -0.95
VPS33A-204ENST00000540669 ZFPL1O95159 310 aa9.09□□□□□ -0.95
VPS33A-204ENST00000540669 TACSTD2P09758 323 aa9.09□□□□□ -0.95
VPS33A-204ENST00000540669 CPEP16870 476 aa9.09□□□□□ -0.95
VPS33A-204ENST00000540669 SSTR2P30874 369 aa9.09□□□□□ -0.95
VPS33A-204ENST00000540669 GDI2P50395 445 aaKnown RBP9.09□□□□□ -0.95
VPS33A-204ENST00000540669 ZNF83P51522 516 aa9.09□□□□□ -0.95
VPS33A-204ENST00000540669 PRKXP51817 358 aa9.09□□□□□ -0.95
VPS33A-204ENST00000540669 GTF2A1P52655 376 aaPredicted RBP9.09□□□□□ -0.95
VPS33A-204ENST00000540669 TPTEP56180 551 aa9.09□□□□□ -0.95
VPS33A-204ENST00000540669 BSPH1Q075Z2 132 aa9.09□□□□□ -0.95
VPS33A-204ENST00000540669 TNK1Q13470 666 aa9.09□□□□□ -0.95
VPS33A-204ENST00000540669 ALKBH1Q13686 389 aaKnown RBP9.09□□□□□ -0.95
VPS33A-204ENST00000540669 OR8B8Q15620 311 aa9.09□□□□□ -0.95
VPS33A-204ENST00000540669 MSMPQ1L6U9 139 aa9.09□□□□□ -0.95
VPS33A-204ENST00000540669 TBC1D28Q2M2D7 210 aa9.09□□□□□ -0.95
VPS33A-204ENST00000540669 BEX5Q5H9J7 111 aa9.09□□□□□ -0.95
VPS33A-204ENST00000540669 RPL22L1Q6P5R6 122 aaKnown RBP9.09□□□□□ -0.95
VPS33A-204ENST00000540669 TMEM108Q6UXF1 575 aa9.09□□□□□ -0.95
VPS33A-204ENST00000540669 FBXW12Q6X9E4 464 aa9.09□□□□□ -0.95
VPS33A-204ENST00000540669 KCTD8Q6ZWB6 473 aa9.09□□□□□ -0.95
VPS33A-204ENST00000540669 SPATC1Q76KD6 591 aa9.09□□□□□ -0.95
VPS33A-204ENST00000540669 FAM220AQ7Z4H9 259 aa9.09□□□□□ -0.95
VPS33A-204ENST00000540669 NAA40Q86UY6 237 aa9.09□□□□□ -0.95
VPS33A-204ENST00000540669 KLBQ86Z14 1044 aa9.09□□□□□ -0.95
VPS33A-204ENST00000540669 YIPF7Q8N8F6 280 aa9.09□□□□□ -0.95
VPS33A-204ENST00000540669 OR52H1Q8NGJ2 320 aa9.09□□□□□ -0.95
VPS33A-204ENST00000540669 OR13F1Q8NGS4 319 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms