RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 TVP23AA6NH52 213 aa9.76□□□□□ -0.85
RTN3-209ENST00000538995 H3BN98 237 aa9.76□□□□□ -0.85
RTN3-209ENST00000538995 J3QLI3 93 aa9.76□□□□□ -0.85
RTN3-209ENST00000538995 GNGT2O14610 69 aa9.76□□□□□ -0.85
RTN3-209ENST00000538995 PNPP00491 289 aa9.76□□□□□ -0.85
RTN3-209ENST00000538995 LCATP04180 440 aa9.76□□□□□ -0.85
RTN3-209ENST00000538995 CPT2P23786 658 aa9.76□□□□□ -0.85
RTN3-209ENST00000538995 SRP9P49458 86 aaKnown RBP9.76□□□□□ -0.85
RTN3-209ENST00000538995 MMP16P51512 607 aa9.76□□□□□ -0.85
RTN3-209ENST00000538995 BTG1P62324 171 aa9.76□□□□□ -0.85
RTN3-209ENST00000538995 GK2Q14410 553 aaPredicted RBP9.76□□□□□ -0.85
RTN3-209ENST00000538995 SPRNQ5BIV9 151 aa9.76□□□□□ -0.85
RTN3-209ENST00000538995 DRAM2Q6UX65 266 aa9.76□□□□□ -0.85
RTN3-209ENST00000538995 DCXRQ7Z4W1 244 aa9.76□□□□□ -0.85
RTN3-209ENST00000538995 SPATA24Q86W54 205 aa9.76□□□□□ -0.85
RTN3-209ENST00000538995 OR5AS1Q8N127 324 aa9.76□□□□□ -0.85
RTN3-209ENST00000538995 RFLNBQ8N5W9 214 aa9.76□□□□□ -0.85
RTN3-209ENST00000538995 CELF2-AS1Q8N7Q2 184 aa9.76□□□□□ -0.85
RTN3-209ENST00000538995 ATG16L2Q8NAA4 619 aa9.76□□□□□ -0.85
RTN3-209ENST00000538995 PAPD5Q8NDF8 572 aaKnown RBP9.76□□□□□ -0.85
RTN3-209ENST00000538995 OR4M2Q8NGB6 313 aa9.76□□□□□ -0.85
RTN3-209ENST00000538995 ITLN1Q8WWA0 313 aa9.76□□□□□ -0.85
RTN3-209ENST00000538995 DNAJC9Q8WXX5 260 aa9.76□□□□□ -0.85
RTN3-209ENST00000538995 MEGF10Q96KG7 1140 aa9.76□□□□□ -0.85
RTN3-209ENST00000538995 SLC22A4Q9H015 551 aa9.76□□□□□ -0.85
RTN3-209ENST00000538995 OPA3Q9H6K4 179 aa9.76□□□□□ -0.85
RTN3-209ENST00000538995 ZNF556Q9HAH1 456 aa9.76□□□□□ -0.85
RTN3-209ENST00000538995 G6PC2Q9NQR9 355 aa9.76□□□□□ -0.85
RTN3-209ENST00000538995 POMPQ9Y244 141 aa9.76□□□□□ -0.85
RTN3-209ENST00000538995 NOP16Q9Y3C1 178 aaKnown RBP9.76□□□□□ -0.85
RTN3-209ENST00000538995 PPIAL4EA0A075B759 164 aa9.75□□□□□ -0.85
RTN3-209ENST00000538995 PPIAL4CA0A0B4J2A2 164 aa9.75□□□□□ -0.85
RTN3-209ENST00000538995 ZNF878C9JN71 531 aa9.75□□□□□ -0.85
RTN3-209ENST00000538995 PPIAL4DF5H284 164 aa9.75□□□□□ -0.85
RTN3-209ENST00000538995 PLPP2O43688 288 aa9.75□□□□□ -0.85
RTN3-209ENST00000538995 E2F6O75461 281 aa9.75□□□□□ -0.85
RTN3-209ENST00000538995 FSTL3O95633 263 aa9.75□□□□□ -0.85
RTN3-209ENST00000538995 GYPBP06028 91 aa9.75□□□□□ -0.85
RTN3-209ENST00000538995 SPARCP09486 303 aa9.75□□□□□ -0.85
RTN3-209ENST00000538995 PPIAL4FP0DN26 164 aa9.75□□□□□ -0.85
RTN3-209ENST00000538995 ANXA8P13928 327 aa9.75□□□□□ -0.85
RTN3-209ENST00000538995 PAICSP22234 425 aaKnown RBP9.75□□□□□ -0.85
RTN3-209ENST00000538995 GATA4P43694 442 aa9.75□□□□□ -0.85
RTN3-209ENST00000538995 SLC6A9P48067 706 aa9.75□□□□□ -0.85
RTN3-209ENST00000538995 ZNF181Q2M3W8 571 aa9.75□□□□□ -0.85
RTN3-209ENST00000538995 LINC01590Q5TEZ4 76 aa9.75□□□□□ -0.85
RTN3-209ENST00000538995 SHQ1Q6PI26 577 aaKnown RBP9.75□□□□□ -0.85
RTN3-209ENST00000538995 LYPD4Q6UWN0 246 aa9.75□□□□□ -0.85
RTN3-209ENST00000538995 PGAP1Q75T13 922 aa9.75□□□□□ -0.85
RTN3-209ENST00000538995 MRPL21Q7Z2W9 205 aaKnown RBP9.75□□□□□ -0.85
RTN3-209ENST00000538995 MUC20Q8N307 709 aaPredicted RBP9.75□□□□□ -0.85
RTN3-209ENST00000538995 KLHL36Q8N4N3 616 aa9.75□□□□□ -0.85
RTN3-209ENST00000538995 OR10AD1Q8NGE0 317 aa9.75□□□□□ -0.85
RTN3-209ENST00000538995 OR51L1Q8NGJ5 315 aa9.75□□□□□ -0.85
RTN3-209ENST00000538995 OR6K6Q8NGW6 343 aa9.75□□□□□ -0.85
RTN3-209ENST00000538995 ST7LQ8TDW4 575 aa9.75□□□□□ -0.85
RTN3-209ENST00000538995 ZNRF4Q8WWF5 429 aa9.75□□□□□ -0.85
RTN3-209ENST00000538995 SIGLEC11Q96RL6 698 aa9.75□□□□□ -0.85
RTN3-209ENST00000538995 COPS4Q9BT78 406 aa9.75□□□□□ -0.85
RTN3-209ENST00000538995 WDR76Q9H967 626 aa9.75□□□□□ -0.85
RTN3-209ENST00000538995 MARCH7Q9H992 704 aa9.75□□□□□ -0.85
RTN3-209ENST00000538995 GCM1Q9NP62 436 aa9.75□□□□□ -0.85
RTN3-209ENST00000538995 TMEM100Q9NV29 134 aa9.75□□□□□ -0.85
RTN3-209ENST00000538995 PDP1Q9P0J1 537 aaPredicted RBP9.75□□□□□ -0.85
RTN3-209ENST00000538995 DNAJB9Q9UBS3 223 aa9.75□□□□□ -0.85
RTN3-209ENST00000538995 TANC2Q9HCD6 1990 aa9.75□□□□□ -0.85
RTN3-209ENST00000538995 LRRC30A6NM36 301 aa9.74□□□□□ -0.85
RTN3-209ENST00000538995 TMEM178BH3BS89 294 aa9.74□□□□□ -0.85
RTN3-209ENST00000538995 ZNF593O00488 134 aaPredicted RBP9.74□□□□□ -0.85
RTN3-209ENST00000538995 MLNRO43193 412 aa9.74□□□□□ -0.85
RTN3-209ENST00000538995 FKBP6O75344 327 aa9.74□□□□□ -0.85
RTN3-209ENST00000538995 FOXH1O75593 365 aa9.74□□□□□ -0.85
RTN3-209ENST00000538995 HMGN1P05114 100 aa9.74□□□□□ -0.85
RTN3-209ENST00000538995 PSKH1P11801 424 aa9.74□□□□□ -0.85
RTN3-209ENST00000538995 OSMP13725 252 aa9.74□□□□□ -0.85
RTN3-209ENST00000538995 MDH2P40926 338 aaKnown RBP9.74□□□□□ -0.85
RTN3-209ENST00000538995 RPS27P42677 84 aaKnown RBP9.74□□□□□ -0.85
RTN3-209ENST00000538995 SLC15A1P46059 708 aa9.74□□□□□ -0.85
RTN3-209ENST00000538995 RASSF2P50749 326 aa9.74□□□□□ -0.85
RTN3-209ENST00000538995 GRB2P62993 217 aaKnown RBP9.74□□□□□ -0.85
RTN3-209ENST00000538995 CBX1P83916 185 aa9.74□□□□□ -0.85
RTN3-209ENST00000538995 BNIP1Q12981 228 aa9.74□□□□□ -0.85
RTN3-209ENST00000538995 LIPNQ5VXI9 398 aa9.74□□□□□ -0.85
RTN3-209ENST00000538995 FAHD2BQ6P2I3 314 aaPredicted RBP9.74□□□□□ -0.85
RTN3-209ENST00000538995 RHOUQ7L0Q8 258 aa9.74□□□□□ -0.85
RTN3-209ENST00000538995 TMEM179BQ7Z7N9 219 aa9.74□□□□□ -0.85
RTN3-209ENST00000538995 LRRC28Q86X40 367 aaPredicted RBP9.74□□□□□ -0.85
RTN3-209ENST00000538995 PHC2Q8IXK0 858 aa9.74□□□□□ -0.85
RTN3-209ENST00000538995 IQCF1Q8N6M8 205 aa9.74□□□□□ -0.85
RTN3-209ENST00000538995 ZNF511Q8NB15 262 aa9.74□□□□□ -0.85
RTN3-209ENST00000538995 BHLHE23Q8NDY6 225 aa9.74□□□□□ -0.85
RTN3-209ENST00000538995 SPRYD4Q8WW59 207 aaPredicted RBP9.74□□□□□ -0.85
RTN3-209ENST00000538995 ERGIC1Q969X5 290 aa9.74□□□□□ -0.85
RTN3-209ENST00000538995 SLAMF6Q96DU3 332 aa9.74□□□□□ -0.85
RTN3-209ENST00000538995 NRBF2Q96F24 287 aa9.74□□□□□ -0.85
RTN3-209ENST00000538995 FAHD2AQ96GK7 314 aa9.74□□□□□ -0.85
RTN3-209ENST00000538995 INTS14Q96SY0 518 aa9.74□□□□□ -0.85
RTN3-209ENST00000538995 KCNJ15Q99712 375 aa9.74□□□□□ -0.85
RTN3-209ENST00000538995 TEX12Q9BXU0 123 aa9.74□□□□□ -0.85
RTN3-209ENST00000538995 TOR3AQ9H497 397 aa9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms