RNA–Protein interactions for RNA: ENST00000536218.5

LIG1-203, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,179 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-203ENST00000536218 HNRNPKP61978 463 aaKnown RBP eCLIP12.54□□□□□ -0.4
LIG1-203ENST00000536218 SKP1P63208 163 aa12.54□□□□□ -0.4
LIG1-203ENST00000536218 NR0B2Q15466 257 aa12.54□□□□□ -0.4
LIG1-203ENST00000536218 ANKRD39Q53RE8 183 aa12.54□□□□□ -0.4
LIG1-203ENST00000536218 THSD4Q6ZMP0 1018 aa12.54□□□□□ -0.4
LIG1-203ENST00000536218 ARHGEF39Q8N4T4 335 aa12.54□□□□□ -0.4
LIG1-203ENST00000536218 ACBD4Q8NC06 268 aa12.54□□□□□ -0.4
LIG1-203ENST00000536218 SLC30A7Q8NEW0 376 aa12.54□□□□□ -0.4
LIG1-203ENST00000536218 KRCC1Q9NPI7 259 aaPredicted RBP12.54□□□□□ -0.4
LIG1-203ENST00000536218 MFNGO00587 321 aa12.54□□□□□ -0.4
LIG1-203ENST00000536218 FBXO24O75426 580 aa12.54□□□□□ -0.4
LIG1-203ENST00000536218 PRSS3P35030 304 aa12.54□□□□□ -0.4
LIG1-203ENST00000536218 SULT1A1P50225 295 aa12.54□□□□□ -0.4
LIG1-203ENST00000536218 EFNB2P52799 333 aa12.54□□□□□ -0.4
LIG1-203ENST00000536218 DND1Q8IYX4 353 aaKnown RBP12.54□□□□□ -0.4
LIG1-203ENST00000536218 ZNF615Q8N8J6 731 aa12.54□□□□□ -0.4
LIG1-203ENST00000536218 OR4C6Q8NH72 309 aa12.54□□□□□ -0.4
LIG1-203ENST00000536218 C16orf52Q8NHV5 167 aa12.54□□□□□ -0.4
LIG1-203ENST00000536218 HLA-CQ95604 372 aa12.54□□□□□ -0.4
LIG1-203ENST00000536218 BPIFA2Q96DR5 249 aa12.54□□□□□ -0.4
LIG1-203ENST00000536218 KPTNQ9Y664 436 aa12.54□□□□□ -0.4
LIG1-203ENST00000536218 THADAQ6YHU6 1953 aa12.53□□□□□ -0.4
LIG1-203ENST00000536218 A0A1B0GTI1 187 aa12.53□□□□□ -0.4
LIG1-203ENST00000536218 FBXO45P0C2W1 286 aa12.53□□□□□ -0.4
LIG1-203ENST00000536218 FABP4P15090 132 aa12.53□□□□□ -0.4
LIG1-203ENST00000536218 HOXA6P31267 233 aa12.53□□□□□ -0.4
LIG1-203ENST00000536218 NUTF2P61970 127 aaKnown RBP12.53□□□□□ -0.4
LIG1-203ENST00000536218 ZNF674Q2M3X9 581 aa12.53□□□□□ -0.4
LIG1-203ENST00000536218 ATPAF1Q5TC12 328 aaPredicted RBP12.53□□□□□ -0.4
LIG1-203ENST00000536218 ZNF385CQ66K41 422 aaPredicted RBP12.53□□□□□ -0.4
LIG1-203ENST00000536218 NPSR1Q6W5P4 371 aa12.53□□□□□ -0.4
LIG1-203ENST00000536218 HIST2H3AQ71DI3 136 aa12.53□□□□□ -0.4
LIG1-203ENST00000536218 CDK20Q8IZL9 346 aa12.53□□□□□ -0.4
LIG1-203ENST00000536218 GABRG1Q8N1C3 465 aa12.53□□□□□ -0.4
LIG1-203ENST00000536218 OR4C3Q8NH37 302 aa12.53□□□□□ -0.4
LIG1-203ENST00000536218 SLC25A36Q96CQ1 311 aa12.53□□□□□ -0.4
LIG1-203ENST00000536218 TAAR9Q96RI9 348 aa12.53□□□□□ -0.4
LIG1-203ENST00000536218 MESP1Q9BRJ9 268 aa12.53□□□□□ -0.4
LIG1-203ENST00000536218 FLRT3Q9NZU0 649 aa12.53□□□□□ -0.4
LIG1-203ENST00000536218 ALPK2Q86TB3 2170 aa12.53□□□□□ -0.4
LIG1-203ENST00000536218 A0A1B0GWA3 101 aa12.53□□□□□ -0.4
LIG1-203ENST00000536218 OGG1O15527 345 aa12.53□□□□□ -0.4
LIG1-203ENST00000536218 MAP3K8P41279 467 aa12.53□□□□□ -0.4
LIG1-203ENST00000536218 Q7L0L9 218 aa12.53□□□□□ -0.4
LIG1-203ENST00000536218 SLC35F3Q8IY50 421 aa12.53□□□□□ -0.4
LIG1-203ENST00000536218 GALNT16Q8N428 558 aa12.53□□□□□ -0.4
LIG1-203ENST00000536218 POTEKPQ9BYX7 375 aa12.53□□□□□ -0.4
LIG1-203ENST00000536218 TP53TG5Q9Y2B4 290 aa12.53□□□□□ -0.4
LIG1-203ENST00000536218 MED31Q9Y3C7 131 aa12.53□□□□□ -0.4
LIG1-203ENST00000536218 ADAM18Q9Y3Q7 739 aa12.53□□□□□ -0.4
LIG1-203ENST00000536218 TIMM10BQ9Y5J6 103 aa12.53□□□□□ -0.4
LIG1-203ENST00000536218 XRCC3O43542 346 aa12.53□□□□□ -0.4
LIG1-203ENST00000536218 IFNGP01579 166 aa12.53□□□□□ -0.4
LIG1-203ENST00000536218 ITGB2P05107 769 aa12.53□□□□□ -0.4
LIG1-203ENST00000536218 QDPRP09417 244 aa12.53□□□□□ -0.4
LIG1-203ENST00000536218 RPS4Y1P22090 263 aaKnown RBP12.53□□□□□ -0.4
LIG1-203ENST00000536218 ACTC1P68032 377 aa12.53□□□□□ -0.4
LIG1-203ENST00000536218 ACTA1P68133 377 aa12.53□□□□□ -0.4
LIG1-203ENST00000536218 ZNF529Q6P280 563 aa12.53□□□□□ -0.4
LIG1-203ENST00000536218 FOXRED2Q8IWF2 684 aa12.53□□□□□ -0.4
LIG1-203ENST00000536218 ZNF321PQ8N8H1 164 aa12.53□□□□□ -0.4
LIG1-203ENST00000536218 OR51D1Q8NGF3 324 aa12.53□□□□□ -0.4
LIG1-203ENST00000536218 OR10A5Q9H207 317 aa12.53□□□□□ -0.4
LIG1-203ENST00000536218 TMEM150CB9EJG8 249 aa12.52□□□□□ -0.41
LIG1-203ENST00000536218 LMO7DNF2Z398 122 aa12.52□□□□□ -0.41
LIG1-203ENST00000536218 KLF4O43474 513 aa12.52□□□□□ -0.41
LIG1-203ENST00000536218 NSA2O95478 260 aaKnown RBP12.52□□□□□ -0.41
LIG1-203ENST00000536218 IFNA10P01566 189 aa12.52□□□□□ -0.41
LIG1-203ENST00000536218 ZNF25P17030 456 aaPredicted RBP12.52□□□□□ -0.41
LIG1-203ENST00000536218 ZNF28P17035 718 aa12.52□□□□□ -0.41
LIG1-203ENST00000536218 FOXL2P58012 376 aa12.52□□□□□ -0.41
LIG1-203ENST00000536218 FXYD6P3P58550 94 aa12.52□□□□□ -0.41
LIG1-203ENST00000536218 ALG10BQ5I7T1 473 aa12.52□□□□□ -0.41
LIG1-203ENST00000536218 RPL22L1Q6P5R6 122 aaKnown RBP12.52□□□□□ -0.41
LIG1-203ENST00000536218 SPNS3Q6ZMD2 512 aa12.52□□□□□ -0.41
LIG1-203ENST00000536218 TMPPEQ6ZT21 453 aa12.52□□□□□ -0.41
LIG1-203ENST00000536218 CD163Q86VB7 1156 aa12.52□□□□□ -0.41
LIG1-203ENST00000536218 ZNF595Q8IYB9 648 aa12.52□□□□□ -0.41
LIG1-203ENST00000536218 JSRP1Q96MG2 331 aaPredicted RBP12.52□□□□□ -0.41
LIG1-203ENST00000536218 VSTM2LQ96N03 204 aa12.52□□□□□ -0.41
LIG1-203ENST00000536218 OR8D2Q9GZM6 311 aa12.52□□□□□ -0.41
LIG1-203ENST00000536218 ZMAT3Q9HA38 289 aaKnown RBP12.52□□□□□ -0.41
LIG1-203ENST00000536218 Q9N2J8 555 aa12.52□□□□□ -0.41
LIG1-203ENST00000536218 KCNIP3Q9Y2W7 256 aa12.52□□□□□ -0.41
LIG1-203ENST00000536218 A0A1B0GVT2 93 aa12.52□□□□□ -0.41
LIG1-203ENST00000536218 BHLHE40O14503 412 aa12.52□□□□□ -0.41
LIG1-203ENST00000536218 AK1P00568 194 aa12.52□□□□□ -0.41
LIG1-203ENST00000536218 OR8U9P0C7N5 309 aa12.52□□□□□ -0.41
LIG1-203ENST00000536218 CCR4P51679 360 aa12.52□□□□□ -0.41
LIG1-203ENST00000536218 DMWDQ09019 674 aa12.52□□□□□ -0.41
LIG1-203ENST00000536218 C14orf28Q4W4Y0 310 aa12.52□□□□□ -0.41
LIG1-203ENST00000536218 C1orf189Q5VU69 101 aa12.52□□□□□ -0.41
LIG1-203ENST00000536218 STAC2Q6ZMT1 411 aa12.52□□□□□ -0.41
LIG1-203ENST00000536218 BPIFB2Q8N4F0 458 aa12.52□□□□□ -0.41
LIG1-203ENST00000536218 NAXEQ8NCW5 288 aa12.52□□□□□ -0.41
LIG1-203ENST00000536218 OR8U1Q8NH10 309 aa12.52□□□□□ -0.41
LIG1-203ENST00000536218 RRNAD1Q96FB5 475 aaKnown RBP12.52□□□□□ -0.41
LIG1-203ENST00000536218 AMDHD2Q9Y303 409 aa12.52□□□□□ -0.41
LIG1-203ENST00000536218 ARID1BQ8NFD5 2236 aaPredicted RBP12.51□□□□□ -0.41
LIG1-203ENST00000536218 TLCD2A6NGC4 264 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 84.3 ms