RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 FAM3AP98173 230 aa5.22□□□□□ -1.57
CD44-225ENST00000527326 CDK3Q00526 305 aa5.22□□□□□ -1.57
CD44-225ENST00000527326 EBPQ15125 230 aaKnown RBP5.22□□□□□ -1.57
CD44-225ENST00000527326 ZBTB6Q15916 424 aa5.22□□□□□ -1.57
CD44-225ENST00000527326 BSXQ3C1V8 233 aa5.22□□□□□ -1.57
CD44-225ENST00000527326 GGTA1PQ4G0N0 100 aa5.22□□□□□ -1.57
CD44-225ENST00000527326 HIKESHIQ53FT3 197 aa5.22□□□□□ -1.57
CD44-225ENST00000527326 Q5PR19 223 aa5.22□□□□□ -1.57
CD44-225ENST00000527326 MARC1Q5VT66 337 aa5.22□□□□□ -1.57
CD44-225ENST00000527326 AGBL4Q5VU57 503 aa5.22□□□□□ -1.57
CD44-225ENST00000527326 CST9Q5W186 159 aa5.22□□□□□ -1.57
CD44-225ENST00000527326 FAM71E1Q6IPT2 247 aa5.22□□□□□ -1.57
CD44-225ENST00000527326 PRSS54Q6PEW0 395 aa5.22□□□□□ -1.57
CD44-225ENST00000527326 TMEM220Q6QAJ8 160 aa5.22□□□□□ -1.57
CD44-225ENST00000527326 OPN5Q6U736 354 aa5.22□□□□□ -1.57
CD44-225ENST00000527326 COLCA1Q6ZS62 124 aa5.22□□□□□ -1.57
CD44-225ENST00000527326 SMIM5Q71RC9 77 aa5.22□□□□□ -1.57
CD44-225ENST00000527326 FAM220AQ7Z4H9 259 aa5.22□□□□□ -1.57
CD44-225ENST00000527326 TMED4Q7Z7H5 227 aa5.22□□□□□ -1.57
CD44-225ENST00000527326 LYG2Q86SG7 212 aa5.22□□□□□ -1.57
CD44-225ENST00000527326 BIVMQ86UB2 503 aa5.22□□□□□ -1.57
CD44-225ENST00000527326 GKN2Q86XP6 184 aa5.22□□□□□ -1.57
CD44-225ENST00000527326 SYT12Q8IV01 421 aa5.22□□□□□ -1.57
CD44-225ENST00000527326 D2HGDHQ8N465 521 aa5.22□□□□□ -1.57
CD44-225ENST00000527326 FAM89BQ8N5H3 189 aa5.22□□□□□ -1.57
CD44-225ENST00000527326 AMER3Q8N944 861 aa5.22□□□□□ -1.57
CD44-225ENST00000527326 NOXO1Q8NFA2 376 aa5.22□□□□□ -1.57
CD44-225ENST00000527326 OR5L1Q8NGL2 311 aa5.22□□□□□ -1.57
CD44-225ENST00000527326 OR6T1Q8NGN1 323 aa5.22□□□□□ -1.57
CD44-225ENST00000527326 OR4L1Q8NH43 312 aa5.22□□□□□ -1.57
CD44-225ENST00000527326 NFKBIDQ8NI38 313 aa5.22□□□□□ -1.57
CD44-225ENST00000527326 MIB2Q96AX9 1013 aa5.22□□□□□ -1.57
CD44-225ENST00000527326 ANKRD9Q96BM1 317 aaPredicted RBP5.22□□□□□ -1.57
CD44-225ENST00000527326 CXorf40BQ96DE9 158 aa5.22□□□□□ -1.57
CD44-225ENST00000527326 TVP23CQ96ET8 276 aa5.22□□□□□ -1.57
CD44-225ENST00000527326 PPP1R16AQ96I34 528 aa5.22□□□□□ -1.57
CD44-225ENST00000527326 EIF5A2Q9GZV4 153 aaKnown RBP5.22□□□□□ -1.57
CD44-225ENST00000527326 RBKSQ9H477 322 aa5.22□□□□□ -1.57
CD44-225ENST00000527326 DPEP2Q9H4A9 486 aa5.22□□□□□ -1.57
CD44-225ENST00000527326 CST9LQ9H4G1 147 aa5.22□□□□□ -1.57
CD44-225ENST00000527326 ZNF552Q9H707 407 aaPredicted RBP5.22□□□□□ -1.57
CD44-225ENST00000527326 RPF1Q9H9Y2 349 aaKnown RBP5.22□□□□□ -1.57
CD44-225ENST00000527326 TAF9BQ9HBM6 251 aa5.22□□□□□ -1.57
CD44-225ENST00000527326 GPR35Q9HC97 309 aa5.22□□□□□ -1.57
CD44-225ENST00000527326 NRIP3Q9NQ35 241 aa5.22□□□□□ -1.57
CD44-225ENST00000527326 ZNF302Q9NR11 478 aa5.22□□□□□ -1.57
CD44-225ENST00000527326 ZNF701Q9NV72 531 aaPredicted RBP5.22□□□□□ -1.57
CD44-225ENST00000527326 TMEM242Q9NWH2 141 aa5.22□□□□□ -1.57
CD44-225ENST00000527326 MARCH2Q9P0N8 246 aa5.22□□□□□ -1.57
CD44-225ENST00000527326 RBPJLQ9UBG7 517 aa5.22□□□□□ -1.57
CD44-225ENST00000527326 STEAP1Q9UHE8 339 aa5.22□□□□□ -1.57
CD44-225ENST00000527326 IL20RAQ9UHF4 553 aa5.22□□□□□ -1.57
CD44-225ENST00000527326 ZNF107Q9UII5 783 aaPredicted RBP5.22□□□□□ -1.57
CD44-225ENST00000527326 SIX4Q9UIU6 781 aa5.22□□□□□ -1.57
CD44-225ENST00000527326 SCML2Q9UQR0 700 aa5.22□□□□□ -1.57
CD44-225ENST00000527326 NTNG1Q9Y2I2 539 aa5.22□□□□□ -1.57
CD44-225ENST00000527326 YBX2Q9Y2T7 364 aaKnown RBP5.22□□□□□ -1.57
CD44-225ENST00000527326 OR51B4Q9Y5P0 310 aa5.22□□□□□ -1.57
CD44-225ENST00000527326 COX11Q9Y6N1 276 aa5.22□□□□□ -1.57
CD44-225ENST00000527326 ZNF236Q9UL36 1845 aa5.22□□□□□ -1.57
CD44-225ENST00000527326 TRIP11Q15643 1979 aa5.22□□□□□ -1.57
CD44-225ENST00000527326 COL11A1P12107 1806 aaPredicted RBP5.21□□□□□ -1.58
CD44-225ENST00000527326 ANKRD12Q6UB98 2062 aa5.21□□□□□ -1.58
CD44-225ENST00000527326 TGIF2-C20orf24A0A0A6YYL0 155 aa5.21□□□□□ -1.58
CD44-225ENST00000527326 C11orf97A0A1B0GVM6 126 aaPredicted RBP5.21□□□□□ -1.58
CD44-225ENST00000527326 DAPL1A0PJW8 107 aa5.21□□□□□ -1.58
CD44-225ENST00000527326 ANKUB1A6NFN9 424 aa5.21□□□□□ -1.58
CD44-225ENST00000527326 GJE1A6NN92 205 aa5.21□□□□□ -1.58
CD44-225ENST00000527326 IFITM5A6NNB3 132 aa5.21□□□□□ -1.58
CD44-225ENST00000527326 YJEFN3A6XGL0 299 aa5.21□□□□□ -1.58
CD44-225ENST00000527326 PROB1E7EW31 1015 aa5.21□□□□□ -1.58
CD44-225ENST00000527326 H0Y8G0 127 aa5.21□□□□□ -1.58
CD44-225ENST00000527326 J3QRE1 110 aa5.21□□□□□ -1.58
CD44-225ENST00000527326 AQP7O14520 342 aa5.21□□□□□ -1.58
CD44-225ENST00000527326 FFAR1O14842 300 aa5.21□□□□□ -1.58
CD44-225ENST00000527326 MMP23AO75900 390 aa5.21□□□□□ -1.58
CD44-225ENST00000527326 JTBO76095 146 aa5.21□□□□□ -1.58
CD44-225ENST00000527326 DUS4LO95620 317 aaKnown RBP5.21□□□□□ -1.58
CD44-225ENST00000527326 PPP1R3DO95685 299 aa5.21□□□□□ -1.58
CD44-225ENST00000527326 SLC16A8O95907 504 aa5.21□□□□□ -1.58
CD44-225ENST00000527326 SCGB1D1O95968 90 aa5.21□□□□□ -1.58
CD44-225ENST00000527326 PDGFBP01127 241 aaPredicted RBP5.21□□□□□ -1.58
CD44-225ENST00000527326 MBPP02686 304 aaPredicted RBP5.21□□□□□ -1.58
CD44-225ENST00000527326 CRYGCP07315 174 aa5.21□□□□□ -1.58
CD44-225ENST00000527326 MMP2P08253 660 aa5.21□□□□□ -1.58
CD44-225ENST00000527326 PGA4P0DJD7 388 aa5.21□□□□□ -1.58
CD44-225ENST00000527326 PGA3P0DJD8 388 aa5.21□□□□□ -1.58
CD44-225ENST00000527326 PGA5P0DJD9 388 aa5.21□□□□□ -1.58
CD44-225ENST00000527326 CT45A8P0DMV1 189 aa5.21□□□□□ -1.58
CD44-225ENST00000527326 CT45A9P0DMV2 189 aa5.21□□□□□ -1.58
CD44-225ENST00000527326 CD37P11049 281 aa5.21□□□□□ -1.58
CD44-225ENST00000527326 GTF2F2P13984 249 aa5.21□□□□□ -1.58
CD44-225ENST00000527326 AMD1P17707 334 aa5.21□□□□□ -1.58
CD44-225ENST00000527326 CCNOP22674 350 aa5.21□□□□□ -1.58
CD44-225ENST00000527326 ZBTB25P24278 435 aa5.21□□□□□ -1.58
CD44-225ENST00000527326 AQP2P41181 271 aa5.21□□□□□ -1.58
CD44-225ENST00000527326 CXCR3P49682 368 aa5.21□□□□□ -1.58
CD44-225ENST00000527326 KHKP50053 298 aa5.21□□□□□ -1.58
CD44-225ENST00000527326 RAB28P51157 221 aa5.21□□□□□ -1.58
CD44-225ENST00000527326 SOX10P56693 466 aa5.21□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms