RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 OR1J2Q8NGS2 313 aa13.22□□□□□ -0.29
LSM1-203ENST00000520755 LILRB1Q8NHL6 650 aaPredicted RBP13.22□□□□□ -0.29
LSM1-203ENST00000520755 NRGNQ92686 78 aa13.22□□□□□ -0.29
LSM1-203ENST00000520755 RORBQ92753 470 aa13.22□□□□□ -0.29
LSM1-203ENST00000520755 ZNF799Q96GE5 643 aa13.22□□□□□ -0.29
LSM1-203ENST00000520755 MND1Q9BWT6 205 aa13.22□□□□□ -0.29
LSM1-203ENST00000520755 PLEKHF2Q9H8W4 249 aa13.22□□□□□ -0.29
LSM1-203ENST00000520755 FAM206AQ9NX38 181 aa13.22□□□□□ -0.29
LSM1-203ENST00000520755 CENPEQ02224 2701 aa13.22□□□□□ -0.29
LSM1-203ENST00000520755 C5orf49A4QMS7 147 aa13.21□□□□□ -0.29
LSM1-203ENST00000520755 F5H5K5 113 aa13.21□□□□□ -0.29
LSM1-203ENST00000520755 HS3ST1O14792 307 aa13.21□□□□□ -0.29
LSM1-203ENST00000520755 ICMTO60725 284 aa13.21□□□□□ -0.29
LSM1-203ENST00000520755 RPP14O95059 124 aaKnown RBP13.21□□□□□ -0.29
LSM1-203ENST00000520755 MT-ND5P03915 603 aa13.21□□□□□ -0.29
LSM1-203ENST00000520755 RPSAP08865 295 aaKnown RBP13.21□□□□□ -0.29
LSM1-203ENST00000520755 SLC2A1P11166 492 aa13.21□□□□□ -0.29
LSM1-203ENST00000520755 ZNF35P13682 527 aa13.21□□□□□ -0.29
LSM1-203ENST00000520755 HSD11B1P28845 292 aa13.21□□□□□ -0.29
LSM1-203ENST00000520755 DCTDP32321 178 aa13.21□□□□□ -0.29
LSM1-203ENST00000520755 GTF2A1P52655 376 aaPredicted RBP13.21□□□□□ -0.29
LSM1-203ENST00000520755 ZNF121P58317 390 aaPredicted RBP13.21□□□□□ -0.29
LSM1-203ENST00000520755 NANOS3P60323 173 aaKnown RBP13.21□□□□□ -0.29
LSM1-203ENST00000520755 GALK2Q01415 458 aa13.21□□□□□ -0.29
LSM1-203ENST00000520755 TAF13Q15543 124 aa13.21□□□□□ -0.29
LSM1-203ENST00000520755 VHLLQ6RSH7 139 aa13.21□□□□□ -0.29
LSM1-203ENST00000520755 RFPL4BQ6ZWI9 263 aa13.21□□□□□ -0.29
LSM1-203ENST00000520755 FAM220AQ7Z4H9 259 aa13.21□□□□□ -0.29
LSM1-203ENST00000520755 KLBQ86Z14 1044 aa13.21□□□□□ -0.29
LSM1-203ENST00000520755 ZNF101Q8IZC7 436 aa13.21□□□□□ -0.29
LSM1-203ENST00000520755 RPS4Y2Q8TD47 263 aa13.21□□□□□ -0.29
LSM1-203ENST00000520755 GATAD2BQ8WXI9 593 aa13.21□□□□□ -0.29
LSM1-203ENST00000520755 OR51B6Q9H340 312 aa13.21□□□□□ -0.29
LSM1-203ENST00000520755 CISD1Q9NZ45 108 aaKnown RBP13.21□□□□□ -0.29
LSM1-203ENST00000520755 ST6GALNAC2Q9UJ37 374 aa13.21□□□□□ -0.29
LSM1-203ENST00000520755 ERGIC3Q9Y282 383 aa13.21□□□□□ -0.29
LSM1-203ENST00000520755 SIRT4Q9Y6E7 314 aaPredicted RBP13.21□□□□□ -0.29
LSM1-203ENST00000520755 R4GMQ9 66 aa13.21□□□□□ -0.29
LSM1-203ENST00000520755 A0A087WXM4 84 aa13.2□□□□□ -0.3
LSM1-203ENST00000520755 MAGEA13PA6NCF6 341 aa13.2□□□□□ -0.3
LSM1-203ENST00000520755 E7EQL1 145 aa13.2□□□□□ -0.3
LSM1-203ENST00000520755 ATP6V1B1P15313 513 aa13.2□□□□□ -0.3
LSM1-203ENST00000520755 KIR3DL2P43630 455 aa13.2□□□□□ -0.3
LSM1-203ENST00000520755 SNTB2Q13425 540 aaKnown RBP13.2□□□□□ -0.3
LSM1-203ENST00000520755 SNAI3Q3KNW1 292 aa13.2□□□□□ -0.3
LSM1-203ENST00000520755 UBE2UQ5VVX9 321 aa13.2□□□□□ -0.3
LSM1-203ENST00000520755 DRAM2Q6UX65 266 aa13.2□□□□□ -0.3
LSM1-203ENST00000520755 TMPRSS11AQ6ZMR5 421 aa13.2□□□□□ -0.3
LSM1-203ENST00000520755 COLCA1Q6ZS62 124 aa13.2□□□□□ -0.3
LSM1-203ENST00000520755 KCTD20Q7Z5Y7 419 aa13.2□□□□□ -0.3
LSM1-203ENST00000520755 PRSS35Q8N3Z0 413 aa13.2□□□□□ -0.3
LSM1-203ENST00000520755 SVOPQ8N4V2 548 aa13.2□□□□□ -0.3
LSM1-203ENST00000520755 ZNF283Q8N7M2 679 aa13.2□□□□□ -0.3
LSM1-203ENST00000520755 FBXW5Q969U6 566 aa13.2□□□□□ -0.3
LSM1-203ENST00000520755 SPTSSAQ969W0 71 aa13.2□□□□□ -0.3
LSM1-203ENST00000520755 PPP1R14AQ96A00 147 aa13.2□□□□□ -0.3
LSM1-203ENST00000520755 MRPL48Q96GC5 212 aaKnown RBP13.2□□□□□ -0.3
LSM1-203ENST00000520755 LURAP1Q96LR2 239 aa13.2□□□□□ -0.3
LSM1-203ENST00000520755 LIME1Q9H400 295 aa13.2□□□□□ -0.3
LSM1-203ENST00000520755 POFUT1Q9H488 388 aa13.2□□□□□ -0.3
LSM1-203ENST00000520755 NIPAL2Q9H841 368 aa13.2□□□□□ -0.3
LSM1-203ENST00000520755 G6PC2Q9NQR9 355 aa13.2□□□□□ -0.3
LSM1-203ENST00000520755 CHCHD3Q9NX63 227 aaKnown RBP13.2□□□□□ -0.3
LSM1-203ENST00000520755 ZNF319Q9P2F9 582 aa13.2□□□□□ -0.3
LSM1-203ENST00000520755 SPEF1Q9Y4P9 236 aa13.2□□□□□ -0.3
LSM1-203ENST00000520755 SNX5Q9Y5X3 404 aa13.2□□□□□ -0.3
LSM1-203ENST00000520755 PLCE1Q9P212 2302 aa13.2□□□□□ -0.3
LSM1-203ENST00000520755 LRBAP50851 2863 aa13.2□□□□□ -0.3
LSM1-203ENST00000520755 DSCAMO60469 2012 aa13.2□□□□□ -0.3
LSM1-203ENST00000520755 SMPD2O60906 423 aa13.19□□□□□ -0.3
LSM1-203ENST00000520755 NGFP01138 241 aa13.19□□□□□ -0.3
LSM1-203ENST00000520755 FAM157BP0CG42 384 aa13.19□□□□□ -0.3
LSM1-203ENST00000520755 FABP6P51161 128 aa13.19□□□□□ -0.3
LSM1-203ENST00000520755 MMP16P51512 607 aa13.19□□□□□ -0.3
LSM1-203ENST00000520755 TPTEP56180 551 aa13.19□□□□□ -0.3
LSM1-203ENST00000520755 SPHARQ15513 63 aa13.19□□□□□ -0.3
LSM1-203ENST00000520755 ZNF829Q3KNS6 432 aaPredicted RBP13.19□□□□□ -0.3
LSM1-203ENST00000520755 WDR38Q5JTN6 314 aa13.19□□□□□ -0.3
LSM1-203ENST00000520755 FDX2Q6P4F2 183 aa13.19□□□□□ -0.3
LSM1-203ENST00000520755 KCTD8Q6ZWB6 473 aa13.19□□□□□ -0.3
LSM1-203ENST00000520755 ZNF367Q7RTV3 350 aa13.19□□□□□ -0.3
LSM1-203ENST00000520755 CATSPERDQ86XM0 798 aa13.19□□□□□ -0.3
LSM1-203ENST00000520755 HIST2H2ABQ8IUE6 130 aaPredicted RBP13.19□□□□□ -0.3
LSM1-203ENST00000520755 EGFL6Q8IUX8 553 aa13.19□□□□□ -0.3
LSM1-203ENST00000520755 ZFP41Q8N8Y5 198 aa13.19□□□□□ -0.3
LSM1-203ENST00000520755 OR8B12Q8NGG6 310 aa13.19□□□□□ -0.3
LSM1-203ENST00000520755 C4orf45Q96LM5 186 aa13.19□□□□□ -0.3
LSM1-203ENST00000520755 OPALINQ96PE5 141 aa13.19□□□□□ -0.3
LSM1-203ENST00000520755 DCLRE1CQ96SD1 692 aaKnown RBP13.19□□□□□ -0.3
LSM1-203ENST00000520755 C1QTNF5Q9BXJ0 243 aa13.19□□□□□ -0.3
LSM1-203ENST00000520755 BRD7Q9NPI1 651 aa13.19□□□□□ -0.3
LSM1-203ENST00000520755 CA10Q9NS85 328 aa13.19□□□□□ -0.3
LSM1-203ENST00000520755 UNC79Q9P2D8 2635 aa13.19□□□□□ -0.3
LSM1-203ENST00000520755 TMEM269A0A1B0GVZ9 245 aa13.18□□□□□ -0.3
LSM1-203ENST00000520755 LOC110117498-PIK3R3F6TDL0 507 aa13.18□□□□□ -0.3
LSM1-203ENST00000520755 INMTO95050 263 aa13.18□□□□□ -0.3
LSM1-203ENST00000520755 TTRP02766 147 aa13.18□□□□□ -0.3
LSM1-203ENST00000520755 NR4A1P22736 598 aa13.18□□□□□ -0.3
LSM1-203ENST00000520755 SLC6A9P48067 706 aa13.18□□□□□ -0.3
LSM1-203ENST00000520755 TGM4P49221 684 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms