RNA–Protein interactions for RNA: ENST00000508501.5

LIMCH1-208, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,054 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-208ENST00000508501 GOLGA4Q13439 2230 aaKnown RBP10.24□□□□□ -0.77
LIMCH1-208ENST00000508501 AGFG1P52594 562 aaKnown RBP10.24□□□□□ -0.77
LIMCH1-208ENST00000508501 B2MP61769 119 aa10.24□□□□□ -0.77
LIMCH1-208ENST00000508501 PDXPQ96GD0 296 aa10.24□□□□□ -0.77
LIMCH1-208ENST00000508501 DOK1Q99704 481 aa10.24□□□□□ -0.77
LIMCH1-208ENST00000508501 AAMDCQ9H7C9 122 aa10.24□□□□□ -0.77
LIMCH1-208ENST00000508501 SLAMF8Q9P0V8 285 aa10.24□□□□□ -0.77
LIMCH1-208ENST00000508501 LSM2Q9Y333 95 aaKnown RBP10.24□□□□□ -0.77
LIMCH1-208ENST00000508501 ZC3H13Q5T200 1668 aaKnown RBP10.24□□□□□ -0.77
LIMCH1-208ENST00000508501 PXDNQ92626 1479 aa10.24□□□□□ -0.77
LIMCH1-208ENST00000508501 SH2D1BO14796 132 aa10.24□□□□□ -0.77
LIMCH1-208ENST00000508501 ZNF253O75346 499 aa10.24□□□□□ -0.77
LIMCH1-208ENST00000508501 GNG4P50150 75 aa10.24□□□□□ -0.77
LIMCH1-208ENST00000508501 RPS23P62266 143 aaKnown RBP10.24□□□□□ -0.77
LIMCH1-208ENST00000508501 HOXC5Q00444 222 aa10.24□□□□□ -0.77
LIMCH1-208ENST00000508501 ZNF789Q5FWF6 425 aa10.24□□□□□ -0.77
LIMCH1-208ENST00000508501 FOXB2Q5VYV0 432 aa10.24□□□□□ -0.77
LIMCH1-208ENST00000508501 FAHD1Q6P587 224 aa10.24□□□□□ -0.77
LIMCH1-208ENST00000508501 GPR32P1Q8NGA4 272 aa10.24□□□□□ -0.77
LIMCH1-208ENST00000508501 NXPE3Q969Y0 559 aa10.24□□□□□ -0.77
LIMCH1-208ENST00000508501 MARVELD3Q96A59 401 aa10.24□□□□□ -0.77
LIMCH1-208ENST00000508501 MEGF10Q96KG7 1140 aa10.24□□□□□ -0.77
LIMCH1-208ENST00000508501 GPX7Q96SL4 187 aaPredicted RBP10.24□□□□□ -0.77
LIMCH1-208ENST00000508501 NUDT16L1Q9BRJ7 211 aaKnown RBP10.24□□□□□ -0.77
LIMCH1-208ENST00000508501 LRFN3Q9BTN0 628 aa10.24□□□□□ -0.77
LIMCH1-208ENST00000508501 PARD6GQ9BYG4 376 aaPredicted RBP10.24□□□□□ -0.77
LIMCH1-208ENST00000508501 RNF39Q9H2S5 420 aa10.24□□□□□ -0.77
LIMCH1-208ENST00000508501 ACER3Q9NUN7 267 aa10.24□□□□□ -0.77
LIMCH1-208ENST00000508501 ADGRB1O14514 1584 aa10.24□□□□□ -0.77
LIMCH1-208ENST00000508501 IGLON5A6NGN9 336 aa10.24□□□□□ -0.77
LIMCH1-208ENST00000508501 TIMM8AO60220 97 aaPredicted RBP10.24□□□□□ -0.77
LIMCH1-208ENST00000508501 CST5P28325 142 aaPredicted RBP10.24□□□□□ -0.77
LIMCH1-208ENST00000508501 ZNF252P-AS1Q0IIN9 211 aa10.24□□□□□ -0.77
LIMCH1-208ENST00000508501 TAZQ16635 292 aa10.24□□□□□ -0.77
LIMCH1-208ENST00000508501 KHDC3LQ587J8 217 aa10.24□□□□□ -0.77
LIMCH1-208ENST00000508501 Q6ZSR9 355 aa10.24□□□□□ -0.77
LIMCH1-208ENST00000508501 CARFQ8N187 725 aa10.24□□□□□ -0.77
LIMCH1-208ENST00000508501 CPEB3Q8NE35 698 aaKnown RBP10.24□□□□□ -0.77
LIMCH1-208ENST00000508501 C19orf43Q9BQ61 176 aa10.24□□□□□ -0.77
LIMCH1-208ENST00000508501 ADAT1Q9BUB4 502 aaKnown RBP10.24□□□□□ -0.77
LIMCH1-208ENST00000508501 PRDM7Q9NQW5 492 aa10.24□□□□□ -0.77
LIMCH1-208ENST00000508501 LEUTXA8MZ59 168 aa10.24□□□□□ -0.77
LIMCH1-208ENST00000508501 MASP2O00187 686 aa10.24□□□□□ -0.77
LIMCH1-208ENST00000508501 CORTO00230 105 aa10.24□□□□□ -0.77
LIMCH1-208ENST00000508501 SLC17A2O00624 439 aa10.24□□□□□ -0.77
LIMCH1-208ENST00000508501 INHBBP09529 407 aa10.24□□□□□ -0.77
LIMCH1-208ENST00000508501 OR5AC1P0C628 307 aa10.24□□□□□ -0.77
LIMCH1-208ENST00000508501 SCGB1A1P11684 91 aa10.24□□□□□ -0.77
LIMCH1-208ENST00000508501 H1FNTQ75WM6 255 aaPredicted RBP10.24□□□□□ -0.77
LIMCH1-208ENST00000508501 RABEPKQ7Z6M1 372 aa10.24□□□□□ -0.77
LIMCH1-208ENST00000508501 BOD1Q96IK1 185 aa10.24□□□□□ -0.77
LIMCH1-208ENST00000508501 EPHX3Q9H6B9 360 aa10.24□□□□□ -0.77
LIMCH1-208ENST00000508501 UBE2ZQ9H832 354 aaPredicted RBP10.24□□□□□ -0.77
LIMCH1-208ENST00000508501 SIAH2O43255 324 aa10.23□□□□□ -0.77
LIMCH1-208ENST00000508501 HAND1O96004 215 aa10.23□□□□□ -0.77
LIMCH1-208ENST00000508501 SLC35E2P0CK97 266 aa10.23□□□□□ -0.77
LIMCH1-208ENST00000508501 PGA4P0DJD7 388 aa10.23□□□□□ -0.77
LIMCH1-208ENST00000508501 PGA5P0DJD9 388 aa10.23□□□□□ -0.77
LIMCH1-208ENST00000508501 NID1P14543 1247 aa10.23□□□□□ -0.77
LIMCH1-208ENST00000508501 LGALS4P56470 323 aa10.23□□□□□ -0.77
LIMCH1-208ENST00000508501 PIGPP57054 158 aa10.23□□□□□ -0.77
LIMCH1-208ENST00000508501 MYPOPQ86VE0 399 aaPredicted RBP10.23□□□□□ -0.77
LIMCH1-208ENST00000508501 MARCH1Q8TCQ1 289 aa10.23□□□□□ -0.77
LIMCH1-208ENST00000508501 PTP4A1Q93096 173 aa10.23□□□□□ -0.77
LIMCH1-208ENST00000508501 TMEM167BQ9NRX6 74 aa10.23□□□□□ -0.77
LIMCH1-208ENST00000508501 FAM206AQ9NX38 181 aa10.23□□□□□ -0.77
LIMCH1-208ENST00000508501 ZNF835Q9Y2P0 537 aa10.23□□□□□ -0.77
LIMCH1-208ENST00000508501 RCL1Q9Y2P8 373 aaKnown RBP10.23□□□□□ -0.77
LIMCH1-208ENST00000508501 A0A1W2PP55 124 aa10.23□□□□□ -0.77
LIMCH1-208ENST00000508501 KCNAB3O43448 404 aa10.23□□□□□ -0.77
LIMCH1-208ENST00000508501 XRCC2O43543 280 aa10.23□□□□□ -0.77
LIMCH1-208ENST00000508501 CLDN17P56750 224 aa10.23□□□□□ -0.77
LIMCH1-208ENST00000508501 IL24Q13007 206 aa10.23□□□□□ -0.77
LIMCH1-208ENST00000508501 SHHQ15465 462 aa10.23□□□□□ -0.77
LIMCH1-208ENST00000508501 DEFB118Q96PH6 123 aa10.23□□□□□ -0.77
LIMCH1-208ENST00000508501 SLIRPQ9GZT3 109 aaKnown RBP10.23□□□□□ -0.77
LIMCH1-208ENST00000508501 LINC00597Q9H2U6 94 aa10.23□□□□□ -0.77
LIMCH1-208ENST00000508501 ZNF355PQ9NSJ1 428 aa10.23□□□□□ -0.77
LIMCH1-208ENST00000508501 RBFOX3A6NFN3 312 aa10.23□□□□□ -0.77
LIMCH1-208ENST00000508501 WNT11O96014 354 aa10.23□□□□□ -0.77
LIMCH1-208ENST00000508501 MT-ND6P03923 174 aa10.23□□□□□ -0.77
LIMCH1-208ENST00000508501 RHOBP62745 196 aa10.23□□□□□ -0.77
LIMCH1-208ENST00000508501 FAM209BQ5JX69 171 aa10.23□□□□□ -0.77
LIMCH1-208ENST00000508501 Q7L0L9 218 aa10.23□□□□□ -0.77
LIMCH1-208ENST00000508501 DCXRQ7Z4W1 244 aa10.23□□□□□ -0.77
LIMCH1-208ENST00000508501 DTD1Q8TEA8 209 aa10.23□□□□□ -0.77
LIMCH1-208ENST00000508501 DNAJA3Q96EY1 480 aa10.23□□□□□ -0.77
LIMCH1-208ENST00000508501 CSF3RQ99062 836 aa10.23□□□□□ -0.77
LIMCH1-208ENST00000508501 OR2J1Q9GZK6 312 aa10.23□□□□□ -0.77
LIMCH1-208ENST00000508501 ZNF107Q9UII5 783 aaPredicted RBP10.23□□□□□ -0.77
LIMCH1-208ENST00000508501 CHST2Q9Y4C5 530 aa10.23□□□□□ -0.77
LIMCH1-208ENST00000508501 A0A0G2JLL6 359 aaPredicted RBP10.23□□□□□ -0.77
LIMCH1-208ENST00000508501 CNIH1O95406 144 aa10.23□□□□□ -0.77
LIMCH1-208ENST00000508501 HPP00738 406 aa10.23□□□□□ -0.77
LIMCH1-208ENST00000508501 TGFBR1P36897 503 aa10.23□□□□□ -0.77
LIMCH1-208ENST00000508501 PTGFRP43088 359 aa10.23□□□□□ -0.77
LIMCH1-208ENST00000508501 FAM3BP58499 235 aaPredicted RBP10.23□□□□□ -0.77
LIMCH1-208ENST00000508501 LINC00303Q3SY05 128 aa10.23□□□□□ -0.77
LIMCH1-208ENST00000508501 XKR7Q5GH72 579 aa10.23□□□□□ -0.77
LIMCH1-208ENST00000508501 SCGB1D4Q6XE38 83 aa10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms