RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 ERVK-18Q9QC07 812 aa10.24□□□□□ -0.77
CUX1-210ENST00000497815 DUSP13Q9UII6 198 aa10.24□□□□□ -0.77
CUX1-210ENST00000497815 DIMT1Q9UNQ2 313 aaKnown RBP10.24□□□□□ -0.77
CUX1-210ENST00000497815 TPRKBQ9Y3C4 175 aa10.24□□□□□ -0.77
CUX1-210ENST00000497815 CMAHPQ9Y471 501 aa10.24□□□□□ -0.77
CUX1-210ENST00000497815 TMEM269A0A1B0GVZ9 245 aa10.23□□□□□ -0.77
CUX1-210ENST00000497815 VSTM5A8MXK1 200 aa10.23□□□□□ -0.77
CUX1-210ENST00000497815 ICMTO60725 284 aa10.23□□□□□ -0.77
CUX1-210ENST00000497815 ATE1O95260 518 aa10.23□□□□□ -0.77
CUX1-210ENST00000497815 CLPTM1O96005 669 aa10.23□□□□□ -0.77
CUX1-210ENST00000497815 CCDC159P0C7I6 412 aa10.23□□□□□ -0.77
CUX1-210ENST00000497815 LIMS3P0CW19 117 aa10.23□□□□□ -0.77
CUX1-210ENST00000497815 LIMS4P0CW20 117 aa10.23□□□□□ -0.77
CUX1-210ENST00000497815 CRHBPP24387 322 aa10.23□□□□□ -0.77
CUX1-210ENST00000497815 EEF1B2P24534 225 aaKnown RBP10.23□□□□□ -0.77
CUX1-210ENST00000497815 C21orf33P30042 268 aaPredicted RBP10.23□□□□□ -0.77
CUX1-210ENST00000497815 GCH1P30793 250 aa10.23□□□□□ -0.77
CUX1-210ENST00000497815 APOBEC3AP31941 199 aaPredicted RBP10.23□□□□□ -0.77
CUX1-210ENST00000497815 SERPINF1P36955 418 aa10.23□□□□□ -0.77
CUX1-210ENST00000497815 MPV17P39210 176 aa10.23□□□□□ -0.77
CUX1-210ENST00000497815 ACTA2P62736 377 aa10.23□□□□□ -0.77
CUX1-210ENST00000497815 ACTG2P63267 376 aa10.23□□□□□ -0.77
CUX1-210ENST00000497815 MALLQ13021 153 aa10.23□□□□□ -0.77
CUX1-210ENST00000497815 GALEQ14376 348 aa10.23□□□□□ -0.77
CUX1-210ENST00000497815 HLXQ14774 488 aaPredicted RBP10.23□□□□□ -0.77
CUX1-210ENST00000497815 ZNF829Q3KNS6 432 aaPredicted RBP10.23□□□□□ -0.77
CUX1-210ENST00000497815 CDONQ4KMG0 1287 aa10.23□□□□□ -0.77
CUX1-210ENST00000497815 RBM48Q5RL73 367 aaKnown RBP10.23□□□□□ -0.77
CUX1-210ENST00000497815 GLYATL3Q5SZD4 288 aa10.23□□□□□ -0.77
CUX1-210ENST00000497815 LIPNQ5VXI9 398 aa10.23□□□□□ -0.77
CUX1-210ENST00000497815 ZNF544Q6NX49 715 aa10.23□□□□□ -0.77
CUX1-210ENST00000497815 LRP11Q86VZ4 500 aa10.23□□□□□ -0.77
CUX1-210ENST00000497815 MUC15Q8N387 334 aa10.23□□□□□ -0.77
CUX1-210ENST00000497815 ZNF611Q8N823 705 aa10.23□□□□□ -0.77
CUX1-210ENST00000497815 OR5L1Q8NGL2 311 aa10.23□□□□□ -0.77
CUX1-210ENST00000497815 OR2AE1Q8NHA4 323 aa10.23□□□□□ -0.77
CUX1-210ENST00000497815 IPCEF1Q8WWN9 437 aaPredicted RBP10.23□□□□□ -0.77
CUX1-210ENST00000497815 MYDGFQ969H8 173 aa10.23□□□□□ -0.77
CUX1-210ENST00000497815 PPP1R14AQ96A00 147 aa10.23□□□□□ -0.77
CUX1-210ENST00000497815 MRPL48Q96GC5 212 aaKnown RBP10.23□□□□□ -0.77
CUX1-210ENST00000497815 C4orf36Q96KX1 117 aa10.23□□□□□ -0.77
CUX1-210ENST00000497815 MRPL37Q9BZE1 423 aaKnown RBP10.23□□□□□ -0.77
CUX1-210ENST00000497815 PLK3Q9H4B4 646 aa10.23□□□□□ -0.77
CUX1-210ENST00000497815 ZNF442Q9H7R0 627 aa10.23□□□□□ -0.77
CUX1-210ENST00000497815 FAIMQ9NVQ4 179 aa10.23□□□□□ -0.77
CUX1-210ENST00000497815 FKBP14Q9NWM8 211 aa10.23□□□□□ -0.77
CUX1-210ENST00000497815 CHCHD3Q9NX63 227 aaKnown RBP10.23□□□□□ -0.77
CUX1-210ENST00000497815 CLEC2DQ9UHP7 191 aa10.23□□□□□ -0.77
CUX1-210ENST00000497815 LAMP3Q9UQV4 416 aa10.23□□□□□ -0.77
CUX1-210ENST00000497815 EXOSC1Q9Y3B2 195 aaKnown RBP10.23□□□□□ -0.77
CUX1-210ENST00000497815 A0A1W2PPW3 197 aa10.22□□□□□ -0.77
CUX1-210ENST00000497815 LOC110117498-PIK3R3F6TDL0 507 aa10.22□□□□□ -0.77
CUX1-210ENST00000497815 SULT1C4O75897 302 aa10.22□□□□□ -0.77
CUX1-210ENST00000497815 PNPP00491 289 aa10.22□□□□□ -0.77
CUX1-210ENST00000497815 CDK1P06493 297 aa10.22□□□□□ -0.77
CUX1-210ENST00000497815 SOD3P08294 240 aa10.22□□□□□ -0.77
CUX1-210ENST00000497815 TACSTD2P09758 323 aa10.22□□□□□ -0.77
CUX1-210ENST00000497815 TTKP33981 857 aa10.22□□□□□ -0.77
CUX1-210ENST00000497815 SLC35A2P78381 396 aa10.22□□□□□ -0.77
CUX1-210ENST00000497815 TIGD6Q17RP2 521 aa10.22□□□□□ -0.77
CUX1-210ENST00000497815 ALKBH6Q3KRA9 238 aa10.22□□□□□ -0.77
CUX1-210ENST00000497815 ZNF718Q3SXZ3 478 aa10.22□□□□□ -0.77
CUX1-210ENST00000497815 BCL2L15Q5TBC7 163 aa10.22□□□□□ -0.77
CUX1-210ENST00000497815 OR2G6Q5TZ20 316 aa10.22□□□□□ -0.77
CUX1-210ENST00000497815 COLCA1Q6ZS62 124 aa10.22□□□□□ -0.77
CUX1-210ENST00000497815 PRSS45Q7RTY3 260 aa10.22□□□□□ -0.77
CUX1-210ENST00000497815 MRPL21Q7Z2W9 205 aaKnown RBP10.22□□□□□ -0.77
CUX1-210ENST00000497815 SYNPRQ8TBG9 265 aa10.22□□□□□ -0.77
CUX1-210ENST00000497815 KLF14Q8TD94 323 aaPredicted RBP10.22□□□□□ -0.77
CUX1-210ENST00000497815 RORBQ92753 470 aa10.22□□□□□ -0.77
CUX1-210ENST00000497815 MRPL24Q96A35 216 aaKnown RBP10.22□□□□□ -0.77
CUX1-210ENST00000497815 CMBLQ96DG6 245 aa10.22□□□□□ -0.77
CUX1-210ENST00000497815 MARS2Q96GW9 593 aaKnown RBP10.22□□□□□ -0.77
CUX1-210ENST00000497815 COG8Q96MW5 612 aa10.22□□□□□ -0.77
CUX1-210ENST00000497815 SIGLEC11Q96RL6 698 aa10.22□□□□□ -0.77
CUX1-210ENST00000497815 ZNF649Q9BS31 505 aa10.22□□□□□ -0.77
CUX1-210ENST00000497815 JAM3Q9BX67 310 aa10.22□□□□□ -0.77
CUX1-210ENST00000497815 CCDC90BQ9GZT6 254 aa10.22□□□□□ -0.77
CUX1-210ENST00000497815 PBOV1Q9GZY1 135 aa10.22□□□□□ -0.77
CUX1-210ENST00000497815 OR10A2Q9H208 303 aa10.22□□□□□ -0.77
CUX1-210ENST00000497815 SP140LQ9H930 580 aa10.22□□□□□ -0.77
CUX1-210ENST00000497815 FAM206AQ9NX38 181 aa10.22□□□□□ -0.77
CUX1-210ENST00000497815 ZNF319Q9P2F9 582 aa10.22□□□□□ -0.77
CUX1-210ENST00000497815 MYEF2Q9P2K5 600 aaKnown RBP10.22□□□□□ -0.77
CUX1-210ENST00000497815 BLOC1S6Q9UL45 172 aa10.22□□□□□ -0.77
CUX1-210ENST00000497815 LRRC42Q9Y546 428 aa10.22□□□□□ -0.77
CUX1-210ENST00000497815 R4GMQ9 66 aa10.22□□□□□ -0.77
CUX1-210ENST00000497815 J3QW42 95 aa10.21□□□□□ -0.77
CUX1-210ENST00000497815 RGS10O43665 173 aa10.21□□□□□ -0.77
CUX1-210ENST00000497815 SRSF10O75494 262 aaKnown RBP10.21□□□□□ -0.77
CUX1-210ENST00000497815 DANCRP0C864 163 aa10.21□□□□□ -0.77
CUX1-210ENST00000497815 DCTDP32321 178 aa10.21□□□□□ -0.77
CUX1-210ENST00000497815 KLF3P57682 345 aaPredicted RBP10.21□□□□□ -0.77
CUX1-210ENST00000497815 ZNF92Q03936 586 aa10.21□□□□□ -0.77
CUX1-210ENST00000497815 GK2Q14410 553 aaPredicted RBP10.21□□□□□ -0.77
CUX1-210ENST00000497815 ODF4Q2M2E3 257 aa10.21□□□□□ -0.77
CUX1-210ENST00000497815 AGAP6Q5VW22 663 aa10.21□□□□□ -0.77
CUX1-210ENST00000497815 TMPRSS11AQ6ZMR5 421 aa10.21□□□□□ -0.77
CUX1-210ENST00000497815 C20orf204Q6ZNR8 217 aa10.21□□□□□ -0.77
CUX1-210ENST00000497815 KCTD20Q7Z5Y7 419 aa10.21□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 116.5 ms