RNA–Protein interactions for RNA: ENST00000494776.1

LIME1-209, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 391 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-209ENST00000494776 USP51Q70EK9 711 aa13.57□□□□□ -0.24
LIME1-209ENST00000494776 MRPL21Q7Z2W9 205 aaKnown RBP13.57□□□□□ -0.24
LIME1-209ENST00000494776 HIST2H2ABQ8IUE6 130 aaPredicted RBP13.57□□□□□ -0.24
LIME1-209ENST00000494776 TCEANCQ8N8B7 351 aa13.57□□□□□ -0.24
LIME1-209ENST00000494776 ZNF454Q8N9F8 522 aa13.57□□□□□ -0.24
LIME1-209ENST00000494776 OR2Z1Q8NG97 314 aa13.57□□□□□ -0.24
LIME1-209ENST00000494776 STMN2Q93045 179 aa13.57□□□□□ -0.24
LIME1-209ENST00000494776 YIPF5Q969M3 257 aa13.57□□□□□ -0.24
LIME1-209ENST00000494776 ZNF582Q96NG8 517 aaPredicted RBP13.57□□□□□ -0.24
LIME1-209ENST00000494776 TEAD3Q99594 435 aa13.57□□□□□ -0.24
LIME1-209ENST00000494776 A0A096LNT2 108 aa13.56□□□□□ -0.24
LIME1-209ENST00000494776 M0R129 80 aa13.56□□□□□ -0.24
LIME1-209ENST00000494776 PPIHO43447 177 aaKnown RBP13.56□□□□□ -0.24
LIME1-209ENST00000494776 BAG2O95816 211 aa13.56□□□□□ -0.24
LIME1-209ENST00000494776 APOC1P02654 83 aa13.56□□□□□ -0.24
LIME1-209ENST00000494776 ANXA2P07355 339 aaKnown RBP13.56□□□□□ -0.24
LIME1-209ENST00000494776 LYNP07948 512 aa13.56□□□□□ -0.24
LIME1-209ENST00000494776 H2BFMP0C1H6 154 aa13.56□□□□□ -0.24
LIME1-209ENST00000494776 SLC2A5P22732 501 aa13.56□□□□□ -0.24
LIME1-209ENST00000494776 CX3CR1P49238 355 aa13.56□□□□□ -0.24
LIME1-209ENST00000494776 CHN2P52757 468 aa13.56□□□□□ -0.24
LIME1-209ENST00000494776 TMEM33P57088 247 aa13.56□□□□□ -0.24
LIME1-209ENST00000494776 TNFAIP6P98066 277 aaPredicted RBP13.56□□□□□ -0.24
LIME1-209ENST00000494776 RIN1Q13671 783 aa13.56□□□□□ -0.24
LIME1-209ENST00000494776 TMEM249Q2WGJ8 235 aa13.56□□□□□ -0.24
LIME1-209ENST00000494776 HFEQ30201 348 aa13.56□□□□□ -0.24
LIME1-209ENST00000494776 C12orf73Q69YU5 71 aa13.56□□□□□ -0.24
LIME1-209ENST00000494776 PGAP1Q75T13 922 aa13.56□□□□□ -0.24
LIME1-209ENST00000494776 BHLHE23Q8NDY6 225 aa13.56□□□□□ -0.24
LIME1-209ENST00000494776 OTOSQ8NHW6 89 aa13.56□□□□□ -0.24
LIME1-209ENST00000494776 TMEM163Q8TC26 289 aa13.56□□□□□ -0.24
LIME1-209ENST00000494776 ELMOD3Q96FG2 381 aa13.56□□□□□ -0.24
LIME1-209ENST00000494776 IL4I1Q96RQ9 567 aa13.56□□□□□ -0.24
LIME1-209ENST00000494776 TOR3AQ9H497 397 aa13.56□□□□□ -0.24
LIME1-209ENST00000494776 SP140LQ9H930 580 aa13.56□□□□□ -0.24
LIME1-209ENST00000494776 ZNF275Q9NSD4 429 aaPredicted RBP13.56□□□□□ -0.24
LIME1-209ENST00000494776 LAMP5Q9UJQ1 280 aa13.56□□□□□ -0.24
LIME1-209ENST00000494776 IGHV4-61A0A0C4DH41 118 aa13.55□□□□□ -0.24
LIME1-209ENST00000494776 EI24O14681 340 aa13.55□□□□□ -0.24
LIME1-209ENST00000494776 TBX1O43435 398 aa13.55□□□□□ -0.24
LIME1-209ENST00000494776 MRPL3P09001 348 aaKnown RBP13.55□□□□□ -0.24
LIME1-209ENST00000494776 SLC2A1P11166 492 aa13.55□□□□□ -0.24
LIME1-209ENST00000494776 POLR2IP36954 125 aaKnown RBP13.55□□□□□ -0.24
LIME1-209ENST00000494776 CRYBB2P43320 205 aa13.55□□□□□ -0.24
LIME1-209ENST00000494776 RAD23AP54725 363 aa13.55□□□□□ -0.24
LIME1-209ENST00000494776 CDK5R2Q13319 367 aa13.55□□□□□ -0.24
LIME1-209ENST00000494776 GK2Q14410 553 aaPredicted RBP13.55□□□□□ -0.24
LIME1-209ENST00000494776 SNAI3Q3KNW1 292 aa13.55□□□□□ -0.24
LIME1-209ENST00000494776 KRTAP21-3Q3LHN1 58 aa13.55□□□□□ -0.24
LIME1-209ENST00000494776 CYB5R2Q6BCY4 276 aa13.55□□□□□ -0.24
LIME1-209ENST00000494776 MEPCEQ7L2J0 689 aaKnown RBP13.55□□□□□ -0.24
LIME1-209ENST00000494776 SLC16A9Q7RTY1 509 aa13.55□□□□□ -0.24
LIME1-209ENST00000494776 BCDIN3DQ7Z5W3 292 aaKnown RBP13.55□□□□□ -0.24
LIME1-209ENST00000494776 OR8G5Q8NG78 346 aa13.55□□□□□ -0.24
LIME1-209ENST00000494776 OR13G1Q8NGZ3 307 aa13.55□□□□□ -0.24
LIME1-209ENST00000494776 RNF133Q8WVZ7 376 aa13.55□□□□□ -0.24
LIME1-209ENST00000494776 SPRYD4Q8WW59 207 aaPredicted RBP13.55□□□□□ -0.24
LIME1-209ENST00000494776 CCL17Q92583 94 aa13.55□□□□□ -0.24
LIME1-209ENST00000494776 GABARAPL3Q9BY60 117 aa13.55□□□□□ -0.24
LIME1-209ENST00000494776 DNAJC27Q9NZQ0 273 aa13.55□□□□□ -0.24
LIME1-209ENST00000494776 NAV3Q8IVL0 2385 aa13.54□□□□□ -0.24
LIME1-209ENST00000494776 LRP5LA4QPB2 252 aa13.54□□□□□ -0.24
LIME1-209ENST00000494776 IQCF6A8MYZ5 107 aa13.54□□□□□ -0.24
LIME1-209ENST00000494776 CD5LO43866 347 aa13.54□□□□□ -0.24
LIME1-209ENST00000494776 ALPLP05186 524 aa13.54□□□□□ -0.24
LIME1-209ENST00000494776 ADH4P08319 380 aa13.54□□□□□ -0.24
LIME1-209ENST00000494776 OTX1P32242 354 aaPredicted RBP13.54□□□□□ -0.24
LIME1-209ENST00000494776 ALDH3A2P51648 485 aa13.54□□□□□ -0.24
LIME1-209ENST00000494776 PRSS12P56730 875 aa13.54□□□□□ -0.24
LIME1-209ENST00000494776 CDC42P60953 191 aa13.54□□□□□ -0.24
LIME1-209ENST00000494776 NXNL2Q5VZ03 156 aa13.54□□□□□ -0.24
LIME1-209ENST00000494776 Q6ZR03 302 aa13.54□□□□□ -0.24
LIME1-209ENST00000494776 RHOUQ7L0Q8 258 aa13.54□□□□□ -0.24
LIME1-209ENST00000494776 GID4Q8IVV7 300 aa13.54□□□□□ -0.24
LIME1-209ENST00000494776 PQLC1Q8N2U9 271 aa13.54□□□□□ -0.24
LIME1-209ENST00000494776 CBR4Q8N4T8 237 aa13.54□□□□□ -0.24
LIME1-209ENST00000494776 POM121Q96HA1 1249 aa13.54□□□□□ -0.24
LIME1-209ENST00000494776 AMELYQ99218 206 aa13.54□□□□□ -0.24
LIME1-209ENST00000494776 C9orf16Q9BUW7 83 aa13.54□□□□□ -0.24
LIME1-209ENST00000494776 YIPF3Q9GZM5 350 aa13.54□□□□□ -0.24
LIME1-209ENST00000494776 NARFLQ9H6Q4 476 aa13.54□□□□□ -0.24
LIME1-209ENST00000494776 BRD7Q9NPI1 651 aa13.54□□□□□ -0.24
LIME1-209ENST00000494776 YAE1D1Q9NRH1 226 aa13.54□□□□□ -0.24
LIME1-209ENST00000494776 TMEM100Q9NV29 134 aa13.54□□□□□ -0.24
LIME1-209ENST00000494776 TREM2Q9NZC2 230 aa13.54□□□□□ -0.24
LIME1-209ENST00000494776 NF1P21359 2839 aa13.54□□□□□ -0.24
LIME1-209ENST00000494776 CCDC182A6NF36 153 aa13.53□□□□□ -0.24
LIME1-209ENST00000494776 GGT3PA6NGU5 568 aa13.53□□□□□ -0.24
LIME1-209ENST00000494776 SLC22A31A6NKX4 558 aa13.53□□□□□ -0.24
LIME1-209ENST00000494776 CLDN25C9JDP6 229 aa13.53□□□□□ -0.24
LIME1-209ENST00000494776 RP2O75695 350 aa13.53□□□□□ -0.24
LIME1-209ENST00000494776 CD55P08174 381 aa13.53□□□□□ -0.24
LIME1-209ENST00000494776 TNFRSF1AP19438 455 aa13.53□□□□□ -0.24
LIME1-209ENST00000494776 OPRL1P41146 370 aa13.53□□□□□ -0.24
LIME1-209ENST00000494776 GZMKP49863 264 aa13.53□□□□□ -0.24
LIME1-209ENST00000494776 HCCSP53701 268 aa13.53□□□□□ -0.24
LIME1-209ENST00000494776 SLC3A1Q07837 685 aa13.53□□□□□ -0.24
LIME1-209ENST00000494776 TRIP10Q15642 601 aa13.53□□□□□ -0.24
LIME1-209ENST00000494776 TIGD6Q17RP2 521 aa13.53□□□□□ -0.24
LIME1-209ENST00000494776 ZIK1Q3SY52 487 aaPredicted RBP13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms