RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 PHYHIPLQ96FC7 376 aa4.38□□□□□ -1.71
USP40-213ENST00000483216 FCRL1Q96LA6 429 aa4.38□□□□□ -1.71
USP40-213ENST00000483216 OR4K3Q96R72 315 aa4.38□□□□□ -1.71
USP40-213ENST00000483216 OR52E6Q96RD3 313 aa4.38□□□□□ -1.71
USP40-213ENST00000483216 ZNF251Q9BRH9 671 aa4.38□□□□□ -1.71
USP40-213ENST00000483216 TMEM43Q9BTV4 400 aa4.38□□□□□ -1.71
USP40-213ENST00000483216 DOHHQ9BU89 302 aa4.38□□□□□ -1.71
USP40-213ENST00000483216 DUSP16Q9BY84 665 aa4.38□□□□□ -1.71
USP40-213ENST00000483216 HDHD2Q9H0R4 259 aa4.38□□□□□ -1.71
USP40-213ENST00000483216 FANCFQ9NPI8 374 aa4.38□□□□□ -1.71
USP40-213ENST00000483216 DCAF16Q9NXF7 216 aa4.38□□□□□ -1.71
USP40-213ENST00000483216 TAS2R16Q9NYV7 291 aa4.38□□□□□ -1.71
USP40-213ENST00000483216 B4GALT7Q9UBV7 327 aa4.38□□□□□ -1.71
USP40-213ENST00000483216 ZNF282Q9UDV7 671 aaPredicted RBP4.38□□□□□ -1.71
USP40-213ENST00000483216 ZNF222Q9UK12 451 aa4.38□□□□□ -1.71
USP40-213ENST00000483216 MGAT4BQ9UQ53 548 aa4.38□□□□□ -1.71
USP40-213ENST00000483216 PLEKHA6Q9Y2H5 1048 aa4.38□□□□□ -1.71
USP40-213ENST00000483216 ALG5Q9Y673 324 aa4.38□□□□□ -1.71
USP40-213ENST00000483216 U3KQV3 271 aa4.38□□□□□ -1.71
USP40-213ENST00000483216 CROCCQ5TZA2 2017 aa4.38□□□□□ -1.71
USP40-213ENST00000483216 PCNTO95613 3336 aa4.37□□□□□ -1.71
USP40-213ENST00000483216 IGHV3OR16-12A0A075B7B8 117 aa4.37□□□□□ -1.71
USP40-213ENST00000483216 MEIKINA0A087WXM9 373 aa4.37□□□□□ -1.71
USP40-213ENST00000483216 SNRPGP15A8MWD9 76 aa4.37□□□□□ -1.71
USP40-213ENST00000483216 TMX2-CTNND1H3BSU7 103 aa4.37□□□□□ -1.71
USP40-213ENST00000483216 L7N2F9 121 aa4.37□□□□□ -1.71
USP40-213ENST00000483216 CXCL11O14625 94 aa4.37□□□□□ -1.71
USP40-213ENST00000483216 PDCD5O14737 125 aa4.37□□□□□ -1.71
USP40-213ENST00000483216 CASKO14936 926 aa4.37□□□□□ -1.71
USP40-213ENST00000483216 B4GALT5O43286 388 aa4.37□□□□□ -1.71
USP40-213ENST00000483216 SSNA1O43805 119 aa4.37□□□□□ -1.71
USP40-213ENST00000483216 MFSD11O43934 449 aa4.37□□□□□ -1.71
USP40-213ENST00000483216 CNMDO75829 334 aa4.37□□□□□ -1.71
USP40-213ENST00000483216 RAB36O95755 333 aa4.37□□□□□ -1.71
USP40-213ENST00000483216 ZNF682O95780 498 aa4.37□□□□□ -1.71
USP40-213ENST00000483216 SLC25A27O95847 323 aa4.37□□□□□ -1.71
USP40-213ENST00000483216 OLFM2O95897 454 aa4.37□□□□□ -1.71
USP40-213ENST00000483216 PGK1P00558 417 aa4.37□□□□□ -1.71
USP40-213ENST00000483216 JCHAINP01591 159 aa4.37□□□□□ -1.71
USP40-213ENST00000483216 PROS1P07225 676 aa4.37□□□□□ -1.71
USP40-213ENST00000483216 SFTPBP07988 381 aa4.37□□□□□ -1.71
USP40-213ENST00000483216 GIPP09681 153 aaPredicted RBP4.37□□□□□ -1.71
USP40-213ENST00000483216 NCK1P16333 377 aa4.37□□□□□ -1.71
USP40-213ENST00000483216 TSPAN8P19075 237 aa4.37□□□□□ -1.71
USP40-213ENST00000483216 RAB4AP20338 218 aa4.37□□□□□ -1.71
USP40-213ENST00000483216 HTR2AP28223 471 aa4.37□□□□□ -1.71
USP40-213ENST00000483216 SLC6A1P30531 599 aa4.37□□□□□ -1.71
USP40-213ENST00000483216 MAP2K4P45985 399 aa4.37□□□□□ -1.71
USP40-213ENST00000483216 PITPNBP48739 271 aa4.37□□□□□ -1.71
USP40-213ENST00000483216 MEOX2P50222 304 aa4.37□□□□□ -1.71
USP40-213ENST00000483216 SMSP52788 366 aa4.37□□□□□ -1.71
USP40-213ENST00000483216 CTBP2P56545 445 aa4.37□□□□□ -1.71
USP40-213ENST00000483216 CLDN8P56748 225 aa4.37□□□□□ -1.71
USP40-213ENST00000483216 OR4D2P58180 307 aa4.37□□□□□ -1.71
USP40-213ENST00000483216 TAS2R43P59537 309 aa4.37□□□□□ -1.71
USP40-213ENST00000483216 POLR2GP62487 172 aaKnown RBP eCLIP4.37□□□□□ -1.71
USP40-213ENST00000483216 CRADDP78560 199 aa4.37□□□□□ -1.71
USP40-213ENST00000483216 CSTF1Q05048 431 aaKnown RBP4.37□□□□□ -1.71
USP40-213ENST00000483216 LAMTOR4Q0VGL1 99 aa4.37□□□□□ -1.71
USP40-213ENST00000483216 RPA4Q13156 261 aa4.37□□□□□ -1.71
USP40-213ENST00000483216 SLAMF1Q13291 335 aa4.37□□□□□ -1.71
USP40-213ENST00000483216 CARTPTQ16568 116 aa4.37□□□□□ -1.71
USP40-213ENST00000483216 HAGHQ16775 308 aa4.37□□□□□ -1.71
USP40-213ENST00000483216 ZNF674Q2M3X9 581 aa4.37□□□□□ -1.71
USP40-213ENST00000483216 Q3ZCU0 254 aa4.37□□□□□ -1.71
USP40-213ENST00000483216 LCE3EQ5T5B0 92 aa4.37□□□□□ -1.71
USP40-213ENST00000483216 IDNKQ5T6J7 187 aa4.37□□□□□ -1.71
USP40-213ENST00000483216 CLEC6AQ6EIG7 209 aa4.37□□□□□ -1.71
USP40-213ENST00000483216 EIF5AL1Q6IS14 154 aaKnown RBP4.37□□□□□ -1.71
USP40-213ENST00000483216 TRIM40Q6P9F5 258 aa4.37□□□□□ -1.71
USP40-213ENST00000483216 B3GLCTQ6Y288 498 aa4.37□□□□□ -1.71
USP40-213ENST00000483216 GCNT7Q6ZNI0 430 aa4.37□□□□□ -1.71
USP40-213ENST00000483216 CALHM3Q86XJ0 350 aa4.37□□□□□ -1.71
USP40-213ENST00000483216 ENTHD1Q8IYW4 607 aa4.37□□□□□ -1.71
USP40-213ENST00000483216 OR6V1Q8N148 313 aa4.37□□□□□ -1.71
USP40-213ENST00000483216 TMEM86AQ8N2M4 240 aa4.37□□□□□ -1.71
USP40-213ENST00000483216 C12orf45Q8N5I9 185 aaPredicted RBP4.37□□□□□ -1.71
USP40-213ENST00000483216 SPICQ8N5J4 248 aa4.37□□□□□ -1.71
USP40-213ENST00000483216 C12orf29Q8N999 325 aa4.37□□□□□ -1.71
USP40-213ENST00000483216 Q8N9G6 341 aaPredicted RBP4.37□□□□□ -1.71
USP40-213ENST00000483216 OR9I1Q8NGQ6 314 aa4.37□□□□□ -1.71
USP40-213ENST00000483216 UBA3Q8TBC4 463 aa4.37□□□□□ -1.71
USP40-213ENST00000483216 SLC22A8Q8TCC7 542 aa4.37□□□□□ -1.71
USP40-213ENST00000483216 RNASE8Q8TDE3 154 aaKnown RBP4.37□□□□□ -1.71
USP40-213ENST00000483216 PIH1D2Q8WWB5 315 aa4.37□□□□□ -1.71
USP40-213ENST00000483216 PHYHIPQ92561 330 aa4.37□□□□□ -1.71
USP40-213ENST00000483216 THRSPQ92748 146 aa4.37□□□□□ -1.71
USP40-213ENST00000483216 PPP1R16AQ96I34 528 aa4.37□□□□□ -1.71
USP40-213ENST00000483216 SLC38A2Q96QD8 506 aa4.37□□□□□ -1.71
USP40-213ENST00000483216 NPY6RQ99463 290 aa4.37□□□□□ -1.71
USP40-213ENST00000483216 C12orf57Q99622 126 aa4.37□□□□□ -1.71
USP40-213ENST00000483216 KCNS3Q9BQ31 491 aa4.37□□□□□ -1.71
USP40-213ENST00000483216 TMEM175Q9BSA9 504 aa4.37□□□□□ -1.71
USP40-213ENST00000483216 TAPBPLQ9BX59 468 aa4.37□□□□□ -1.71
USP40-213ENST00000483216 POLR2J2Q9GZM3 115 aaKnown RBP4.37□□□□□ -1.71
USP40-213ENST00000483216 ELOVL4Q9GZR5 314 aa4.37□□□□□ -1.71
USP40-213ENST00000483216 ABCG4Q9H172 646 aa4.37□□□□□ -1.71
USP40-213ENST00000483216 OR51J1Q9H342 316 aa4.37□□□□□ -1.71
USP40-213ENST00000483216 CLMPQ9H6B4 373 aa4.37□□□□□ -1.71
USP40-213ENST00000483216 UCK1Q9HA47 277 aa4.37□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms