RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 PPICP45877 212 aa3.41□□□□□ -1.86
UPF3B-203ENST00000478840 RPS10P46783 165 aaKnown RBP3.41□□□□□ -1.86
UPF3B-203ENST00000478840 CSNK1A1P48729 337 aa3.41□□□□□ -1.86
UPF3B-203ENST00000478840 HCAR3P49019 387 aa3.41□□□□□ -1.86
UPF3B-203ENST00000478840 UBE2AP49459 152 aa3.41□□□□□ -1.86
UPF3B-203ENST00000478840 AP1S2P56377 157 aa3.41□□□□□ -1.86
UPF3B-203ENST00000478840 SYNJ2BPP57105 145 aa3.41□□□□□ -1.86
UPF3B-203ENST00000478840 UBE2NP61088 152 aaKnown RBP3.41□□□□□ -1.86
UPF3B-203ENST00000478840 RPS23P62266 143 aaKnown RBP3.41□□□□□ -1.86
UPF3B-203ENST00000478840 CAPRIN1Q14444 709 aaKnown RBP3.41□□□□□ -1.86
UPF3B-203ENST00000478840 AVPI1Q5T686 147 aa3.41□□□□□ -1.86
UPF3B-203ENST00000478840 PLET1Q6UQ28 207 aa3.41□□□□□ -1.86
UPF3B-203ENST00000478840 TMPRSS11AQ6ZMR5 421 aa3.41□□□□□ -1.86
UPF3B-203ENST00000478840 PID1Q7Z2X4 250 aa3.41□□□□□ -1.86
UPF3B-203ENST00000478840 PCP2Q8IVA1 136 aa3.41□□□□□ -1.86
UPF3B-203ENST00000478840 RNF175Q8N4F7 328 aa3.41□□□□□ -1.86
UPF3B-203ENST00000478840 C15orf56Q8N910 161 aa3.41□□□□□ -1.86
UPF3B-203ENST00000478840 LRRC29Q8WV35 223 aa3.41□□□□□ -1.86
UPF3B-203ENST00000478840 CACNG8Q8WXS5 425 aa3.41□□□□□ -1.86
UPF3B-203ENST00000478840 DCPSQ96C86 337 aaKnown RBP3.41□□□□□ -1.86
UPF3B-203ENST00000478840 SCGB3A2Q96PL1 93 aa3.41□□□□□ -1.86
UPF3B-203ENST00000478840 UQCC2Q9BRT2 126 aa3.41□□□□□ -1.86
UPF3B-203ENST00000478840 REEP1Q9H902 201 aa3.41□□□□□ -1.86
UPF3B-203ENST00000478840 SLC40A1Q9NP59 571 aa3.41□□□□□ -1.86
UPF3B-203ENST00000478840 RBAKQ9NYW8 714 aaPredicted RBP3.41□□□□□ -1.86
UPF3B-203ENST00000478840 ADA2Q9NZK5 511 aa3.41□□□□□ -1.86
UPF3B-203ENST00000478840 TRMT112Q9UI30 125 aaKnown RBP3.41□□□□□ -1.86
UPF3B-203ENST00000478840 ASTN1O14525 1302 aa3.41□□□□□ -1.86
UPF3B-203ENST00000478840 ZNFX1Q9P2E3 1918 aaKnown RBP3.4□□□□□ -1.86
UPF3B-203ENST00000478840 PALLDQ8WX93 1383 aa3.4□□□□□ -1.86
UPF3B-203ENST00000478840 PIK3R4Q99570 1358 aa3.4□□□□□ -1.86
UPF3B-203ENST00000478840 JCADQ9P266 1359 aa3.4□□□□□ -1.86
UPF3B-203ENST00000478840 A0A0B4J2E0 115 aa3.4□□□□□ -1.87
UPF3B-203ENST00000478840 A0A0J9YXV3 536 aa3.4□□□□□ -1.87
UPF3B-203ENST00000478840 WI2-2373I1.2A0A1W2PRP0 233 aa3.4□□□□□ -1.87
UPF3B-203ENST00000478840 SYCE1LA8MT33 242 aa3.4□□□□□ -1.87
UPF3B-203ENST00000478840 ANKRD63C9JTQ0 380 aa3.4□□□□□ -1.87
UPF3B-203ENST00000478840 RFXANKO14593 260 aa3.4□□□□□ -1.87
UPF3B-203ENST00000478840 CDC40O60508 579 aaKnown RBP eCLIP3.4□□□□□ -1.87
UPF3B-203ENST00000478840 RDH16O75452 317 aa3.4□□□□□ -1.87
UPF3B-203ENST00000478840 CA11O75493 328 aa3.4□□□□□ -1.87
UPF3B-203ENST00000478840 GABARAPO95166 117 aa3.4□□□□□ -1.87
UPF3B-203ENST00000478840 SLC25A27O95847 323 aa3.4□□□□□ -1.87
UPF3B-203ENST00000478840 PRPS2P11908 318 aa3.4□□□□□ -1.87
UPF3B-203ENST00000478840 CCNOP22674 350 aa3.4□□□□□ -1.87
UPF3B-203ENST00000478840 GPR4P46093 362 aa3.4□□□□□ -1.87
UPF3B-203ENST00000478840 ATP5J2P56134 94 aa3.4□□□□□ -1.87
UPF3B-203ENST00000478840 ARG2P78540 354 aa3.4□□□□□ -1.87
UPF3B-203ENST00000478840 CKAP4Q07065 602 aaKnown RBP3.4□□□□□ -1.87
UPF3B-203ENST00000478840 FAM92BQ6ZTR7 304 aa3.4□□□□□ -1.87
UPF3B-203ENST00000478840 DAW1Q8N136 415 aa3.4□□□□□ -1.87
UPF3B-203ENST00000478840 METTL13Q8N6R0 699 aa3.4□□□□□ -1.87
UPF3B-203ENST00000478840 COX18Q8N8Q8 333 aa3.4□□□□□ -1.87
UPF3B-203ENST00000478840 Q8N976 141 aa3.4□□□□□ -1.87
UPF3B-203ENST00000478840 OR11H7Q8NGC8 314 aa3.4□□□□□ -1.87
UPF3B-203ENST00000478840 OR6K6Q8NGW6 343 aa3.4□□□□□ -1.87
UPF3B-203ENST00000478840 LRRC20Q8TCA0 184 aa3.4□□□□□ -1.87
UPF3B-203ENST00000478840 RAB1BQ9H0U4 201 aa3.4□□□□□ -1.87
UPF3B-203ENST00000478840 CSNK1G1Q9HCP0 422 aa3.4□□□□□ -1.87
UPF3B-203ENST00000478840 TREX1Q9NSU2 369 aa3.4□□□□□ -1.87
UPF3B-203ENST00000478840 SLC17A7Q9P2U7 560 aa3.4□□□□□ -1.87
UPF3B-203ENST00000478840 GGA2Q9UJY4 613 aa3.4□□□□□ -1.87
UPF3B-203ENST00000478840 ZNF257Q9Y2Q1 563 aa3.4□□□□□ -1.87
UPF3B-203ENST00000478840 MTCL1Q9Y4B5 1905 aaKnown RBP3.4□□□□□ -1.87
UPF3B-203ENST00000478840 PCDH11XQ9BZA7 1347 aa3.4□□□□□ -1.87
UPF3B-203ENST00000478840 TET2Q6N021 2002 aaPredicted RBP3.39□□□□□ -1.87
UPF3B-203ENST00000478840 IGLV1-50A0A075B6I6 118 aa3.39□□□□□ -1.87
UPF3B-203ENST00000478840 TRBV6-6A0A0A6YYG2 114 aa3.39□□□□□ -1.87
UPF3B-203ENST00000478840 IGHV5-51A0A0C4DH38 117 aa3.39□□□□□ -1.87
UPF3B-203ENST00000478840 OR6C74A6NCV1 312 aa3.39□□□□□ -1.87
UPF3B-203ENST00000478840 A8MU10 97 aa3.39□□□□□ -1.87
UPF3B-203ENST00000478840 E7EWF7 191 aa3.39□□□□□ -1.87
UPF3B-203ENST00000478840 K7ERQ8 282 aa3.39□□□□□ -1.87
UPF3B-203ENST00000478840 ENTPD5O75356 428 aa3.39□□□□□ -1.87
UPF3B-203ENST00000478840 BCHEP06276 602 aa3.39□□□□□ -1.87
UPF3B-203ENST00000478840 CD37P11049 281 aa3.39□□□□□ -1.87
UPF3B-203ENST00000478840 CCL2P13500 99 aa3.39□□□□□ -1.87
UPF3B-203ENST00000478840 TCN2P20062 427 aa3.39□□□□□ -1.87
UPF3B-203ENST00000478840 BGNP21810 368 aa3.39□□□□□ -1.87
UPF3B-203ENST00000478840 MYL9P24844 172 aa3.39□□□□□ -1.87
UPF3B-203ENST00000478840 MYCNOSP40205 109 aa3.39□□□□□ -1.87
UPF3B-203ENST00000478840 RAB7AP51149 207 aa3.39□□□□□ -1.87
UPF3B-203ENST00000478840 UBE2E1P51965 193 aa3.39□□□□□ -1.87
UPF3B-203ENST00000478840 UCNP55089 124 aa3.39□□□□□ -1.87
UPF3B-203ENST00000478840 RPL18AQ02543 176 aaKnown RBP3.39□□□□□ -1.87
UPF3B-203ENST00000478840 ERCC8Q13216 396 aa3.39□□□□□ -1.87
UPF3B-203ENST00000478840 ATP6V1FQ16864 119 aa3.39□□□□□ -1.87
UPF3B-203ENST00000478840 C18orf21Q32NC0 220 aaPredicted RBP3.39□□□□□ -1.87
UPF3B-203ENST00000478840 ORMDL2Q53FV1 153 aa3.39□□□□□ -1.87
UPF3B-203ENST00000478840 CYB5R2Q6BCY4 276 aa3.39□□□□□ -1.87
UPF3B-203ENST00000478840 CEMP1Q6PRD7 247 aaPredicted RBP3.39□□□□□ -1.87
UPF3B-203ENST00000478840 C11orf53Q8IXP5 236 aa3.39□□□□□ -1.87
UPF3B-203ENST00000478840 ASZ1Q8WWH4 475 aa3.39□□□□□ -1.87
UPF3B-203ENST00000478840 UBE2E2Q96LR5 201 aa3.39□□□□□ -1.87
UPF3B-203ENST00000478840 GLT1D1Q96MS3 346 aa3.39□□□□□ -1.87
UPF3B-203ENST00000478840 SPNS1Q9H2V7 528 aa3.39□□□□□ -1.87
UPF3B-203ENST00000478840 ASB8Q9H765 288 aa3.39□□□□□ -1.87
UPF3B-203ENST00000478840 NOX3Q9HBY0 568 aa3.39□□□□□ -1.87
UPF3B-203ENST00000478840 RGS18Q9NS28 235 aa3.39□□□□□ -1.87
UPF3B-203ENST00000478840 ANAPC11Q9NYG5 84 aa3.39□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms