RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 PKP2Q99959 881 aa13.24□□□□□ -0.29
HMGA1-206ENST00000478214 ABHD6Q9BV23 337 aa13.24□□□□□ -0.29
HMGA1-206ENST00000478214 ZKSCAN7Q9P0L1 754 aaPredicted RBP13.24□□□□□ -0.29
HMGA1-206ENST00000478214 TMEFF2Q9UIK5 374 aaPredicted RBP13.24□□□□□ -0.29
HMGA1-206ENST00000478214 ZDHHC8Q9ULC8 765 aa13.24□□□□□ -0.29
HMGA1-206ENST00000478214 C5orf63A6NC05 138 aa13.23□□□□□ -0.29
HMGA1-206ENST00000478214 ZAR1LA6NP61 321 aa13.23□□□□□ -0.29
HMGA1-206ENST00000478214 M0R129 80 aa13.23□□□□□ -0.29
HMGA1-206ENST00000478214 TLX2O43763 284 aaPredicted RBP13.23□□□□□ -0.29
HMGA1-206ENST00000478214 PRKYO43930 277 aa13.23□□□□□ -0.29
HMGA1-206ENST00000478214 SELENOFO60613 162 aa13.23□□□□□ -0.29
HMGA1-206ENST00000478214 SLC2A5P22732 501 aa13.23□□□□□ -0.29
HMGA1-206ENST00000478214 IGFBP5P24593 272 aa13.23□□□□□ -0.29
HMGA1-206ENST00000478214 IL2RGP31785 369 aa13.23□□□□□ -0.29
HMGA1-206ENST00000478214 GZMKP49863 264 aa13.23□□□□□ -0.29
HMGA1-206ENST00000478214 RPS7P62081 194 aaKnown RBP13.23□□□□□ -0.29
HMGA1-206ENST00000478214 TNFAIP6P98066 277 aaPredicted RBP13.23□□□□□ -0.29
HMGA1-206ENST00000478214 PPP2R2BQ00005 443 aa13.23□□□□□ -0.29
HMGA1-206ENST00000478214 APOFQ13790 326 aa13.23□□□□□ -0.29
HMGA1-206ENST00000478214 GK2Q14410 553 aaPredicted RBP13.23□□□□□ -0.29
HMGA1-206ENST00000478214 SNAI3Q3KNW1 292 aa13.23□□□□□ -0.29
HMGA1-206ENST00000478214 C6orf52Q5T4I8 152 aa13.23□□□□□ -0.29
HMGA1-206ENST00000478214 SLX4IPQ5VYV7 408 aa13.23□□□□□ -0.29
HMGA1-206ENST00000478214 CYB5R2Q6BCY4 276 aa13.23□□□□□ -0.29
HMGA1-206ENST00000478214 SHFQ7M4L6 423 aa13.23□□□□□ -0.29
HMGA1-206ENST00000478214 OR2Z1Q8NG97 314 aa13.23□□□□□ -0.29
HMGA1-206ENST00000478214 ELMOD3Q96FG2 381 aa13.23□□□□□ -0.29
HMGA1-206ENST00000478214 POM121Q96HA1 1249 aa13.23□□□□□ -0.29
HMGA1-206ENST00000478214 DIRC2Q96SL1 478 aa13.23□□□□□ -0.29
HMGA1-206ENST00000478214 KCNJ15Q99712 375 aa13.23□□□□□ -0.29
HMGA1-206ENST00000478214 CIB1Q99828 191 aa13.23□□□□□ -0.29
HMGA1-206ENST00000478214 SOX7Q9BT81 388 aa13.23□□□□□ -0.29
HMGA1-206ENST00000478214 EGLN1Q9GZT9 426 aa13.23□□□□□ -0.29
HMGA1-206ENST00000478214 NARFLQ9H6Q4 476 aa13.23□□□□□ -0.29
HMGA1-206ENST00000478214 TREM2Q9NZC2 230 aa13.23□□□□□ -0.29
HMGA1-206ENST00000478214 ZNF878C9JN71 531 aa13.22□□□□□ -0.29
HMGA1-206ENST00000478214 WNT9BO14905 357 aa13.22□□□□□ -0.29
HMGA1-206ENST00000478214 CD55P08174 381 aa13.22□□□□□ -0.29
HMGA1-206ENST00000478214 SLC2A1P11166 492 aa13.22□□□□□ -0.29
HMGA1-206ENST00000478214 ZNF16P17020 682 aaPredicted RBP13.22□□□□□ -0.29
HMGA1-206ENST00000478214 POLR2IP36954 125 aaKnown RBP13.22□□□□□ -0.29
HMGA1-206ENST00000478214 NAA10P41227 235 aaPredicted RBP13.22□□□□□ -0.29
HMGA1-206ENST00000478214 CHN2P52757 468 aa13.22□□□□□ -0.29
HMGA1-206ENST00000478214 MALLQ13021 153 aa13.22□□□□□ -0.29
HMGA1-206ENST00000478214 HNRNPA0Q13151 305 aaKnown RBP13.22□□□□□ -0.29
HMGA1-206ENST00000478214 SLC35D3Q5M8T2 416 aa13.22□□□□□ -0.29
HMGA1-206ENST00000478214 ZFP1Q6P2D0 407 aa13.22□□□□□ -0.29
HMGA1-206ENST00000478214 DRAM2Q6UX65 266 aa13.22□□□□□ -0.29
HMGA1-206ENST00000478214 BHLHE23Q8NDY6 225 aa13.22□□□□□ -0.29
HMGA1-206ENST00000478214 OR8G5Q8NG78 346 aa13.22□□□□□ -0.29
HMGA1-206ENST00000478214 RNF133Q8WVZ7 376 aa13.22□□□□□ -0.29
HMGA1-206ENST00000478214 MSI2Q96DH6 328 aaKnown RBP13.22□□□□□ -0.29
HMGA1-206ENST00000478214 N6AMT1Q9Y5N5 214 aa13.22□□□□□ -0.29
HMGA1-206ENST00000478214 CCDC182A6NF36 153 aa13.21□□□□□ -0.29
HMGA1-206ENST00000478214 A8MV72 311 aaPredicted RBP13.21□□□□□ -0.29
HMGA1-206ENST00000478214 IQCF6A8MYZ5 107 aa13.21□□□□□ -0.29
HMGA1-206ENST00000478214 TNFSF4P23510 183 aa13.21□□□□□ -0.29
HMGA1-206ENST00000478214 RBMXP38159 391 aaKnown RBP13.21□□□□□ -0.29
HMGA1-206ENST00000478214 SLC15A1P46059 708 aa13.21□□□□□ -0.29
HMGA1-206ENST00000478214 ZNF92Q03936 586 aa13.21□□□□□ -0.29
HMGA1-206ENST00000478214 HFEQ30201 348 aa13.21□□□□□ -0.29
HMGA1-206ENST00000478214 AVPI1Q5T686 147 aa13.21□□□□□ -0.29
HMGA1-206ENST00000478214 C12orf73Q69YU5 71 aa13.21□□□□□ -0.29
HMGA1-206ENST00000478214 BCDIN3DQ7Z5W3 292 aaKnown RBP13.21□□□□□ -0.29
HMGA1-206ENST00000478214 ZNF283Q8N7M2 679 aa13.21□□□□□ -0.29
HMGA1-206ENST00000478214 TCEANCQ8N8B7 351 aa13.21□□□□□ -0.29
HMGA1-206ENST00000478214 OR2AE1Q8NHA4 323 aa13.21□□□□□ -0.29
HMGA1-206ENST00000478214 CLDND2Q8NHS1 167 aa13.21□□□□□ -0.29
HMGA1-206ENST00000478214 OTOSQ8NHW6 89 aa13.21□□□□□ -0.29
HMGA1-206ENST00000478214 CCL17Q92583 94 aa13.21□□□□□ -0.29
HMGA1-206ENST00000478214 ZNF582Q96NG8 517 aaPredicted RBP13.21□□□□□ -0.29
HMGA1-206ENST00000478214 TEAD3Q99594 435 aa13.21□□□□□ -0.29
HMGA1-206ENST00000478214 OSBPL10Q9BXB5 764 aa13.21□□□□□ -0.29
HMGA1-206ENST00000478214 PRRG3Q9BZD7 231 aa13.21□□□□□ -0.29
HMGA1-206ENST00000478214 KLHDC2Q9Y2U9 406 aa13.21□□□□□ -0.29
HMGA1-206ENST00000478214 JMJD1CQ15652 2540 aa13.2□□□□□ -0.3
HMGA1-206ENST00000478214 LOC100289279A0A1B0GTE1 492 aa13.2□□□□□ -0.3
HMGA1-206ENST00000478214 CLDN25C9JDP6 229 aa13.2□□□□□ -0.3
HMGA1-206ENST00000478214 H0YL77 283 aa13.2□□□□□ -0.3
HMGA1-206ENST00000478214 LYNP07948 512 aa13.2□□□□□ -0.3
HMGA1-206ENST00000478214 SELEP16581 610 aa13.2□□□□□ -0.3
HMGA1-206ENST00000478214 HSD11B1P28845 292 aa13.2□□□□□ -0.3
HMGA1-206ENST00000478214 OPRL1P41146 370 aa13.2□□□□□ -0.3
HMGA1-206ENST00000478214 CX3CR1P49238 355 aa13.2□□□□□ -0.3
HMGA1-206ENST00000478214 HCCSP53701 268 aa13.2□□□□□ -0.3
HMGA1-206ENST00000478214 GRB2P62993 217 aaKnown RBP13.2□□□□□ -0.3
HMGA1-206ENST00000478214 EFNB1P98172 346 aa13.2□□□□□ -0.3
HMGA1-206ENST00000478214 MVKQ03426 396 aa13.2□□□□□ -0.3
HMGA1-206ENST00000478214 GLYATL3Q5SZD4 288 aa13.2□□□□□ -0.3
HMGA1-206ENST00000478214 PGAP1Q75T13 922 aa13.2□□□□□ -0.3
HMGA1-206ENST00000478214 MRPL21Q7Z2W9 205 aaKnown RBP13.2□□□□□ -0.3
HMGA1-206ENST00000478214 ZNF454Q8N9F8 522 aa13.2□□□□□ -0.3
HMGA1-206ENST00000478214 OR10AD1Q8NGE0 317 aa13.2□□□□□ -0.3
HMGA1-206ENST00000478214 OR13G1Q8NGZ3 307 aa13.2□□□□□ -0.3
HMGA1-206ENST00000478214 THEM6Q8WUY1 208 aa13.2□□□□□ -0.3
HMGA1-206ENST00000478214 ITLN1Q8WWA0 313 aa13.2□□□□□ -0.3
HMGA1-206ENST00000478214 HPS1Q92902 700 aa13.2□□□□□ -0.3
HMGA1-206ENST00000478214 RAB3IPQ96QF0 476 aaPredicted RBP13.2□□□□□ -0.3
HMGA1-206ENST00000478214 RBM4BQ9BQ04 359 aaKnown RBP13.2□□□□□ -0.3
HMGA1-206ENST00000478214 SLC30A2Q9BRI3 323 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 71.9 ms