RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 CCDC159P0C7I6 412 aa5.77□□□□□ -1.49
CCDC88A-213ENST00000476903 GAAP10253 952 aa5.77□□□□□ -1.49
CCDC88A-213ENST00000476903 TUBG1P23258 451 aa5.77□□□□□ -1.49
CCDC88A-213ENST00000476903 FPR3P25089 353 aa5.77□□□□□ -1.49
CCDC88A-213ENST00000476903 CRABP1P29762 137 aa5.77□□□□□ -1.49
CCDC88A-213ENST00000476903 SLC6A6P31641 620 aa5.77□□□□□ -1.49
CCDC88A-213ENST00000476903 GNALP38405 381 aa5.77□□□□□ -1.49
CCDC88A-213ENST00000476903 IFNGR2P38484 337 aa5.77□□□□□ -1.49
CCDC88A-213ENST00000476903 CRYBB2P43320 205 aa5.77□□□□□ -1.49
CCDC88A-213ENST00000476903 HTR5AP47898 357 aa5.77□□□□□ -1.49
CCDC88A-213ENST00000476903 MMP15P51511 669 aa5.77□□□□□ -1.49
CCDC88A-213ENST00000476903 MNAT1P51948 309 aa5.77□□□□□ -1.49
CCDC88A-213ENST00000476903 FXYD6P3P58550 94 aa5.77□□□□□ -1.49
CCDC88A-213ENST00000476903 LSM6P62312 80 aaKnown RBP5.77□□□□□ -1.49
CCDC88A-213ENST00000476903 MXRA7P84157 204 aa5.77□□□□□ -1.49
CCDC88A-213ENST00000476903 TSTQ16762 297 aaKnown RBP5.77□□□□□ -1.49
CCDC88A-213ENST00000476903 HFEQ30201 348 aa5.77□□□□□ -1.49
CCDC88A-213ENST00000476903 TMEM95Q3KNT9 176 aa5.77□□□□□ -1.49
CCDC88A-213ENST00000476903 PGM2L1Q6PCE3 622 aa5.77□□□□□ -1.49
CCDC88A-213ENST00000476903 DNM1P34Q6PK57 102 aa5.77□□□□□ -1.49
CCDC88A-213ENST00000476903 PIGWQ7Z7B1 504 aa5.77□□□□□ -1.49
CCDC88A-213ENST00000476903 ZER1Q7Z7L7 766 aa5.77□□□□□ -1.49
CCDC88A-213ENST00000476903 GLCCI1Q86VQ1 547 aa5.77□□□□□ -1.49
CCDC88A-213ENST00000476903 DEFB107AQ8IZN7 70 aa5.77□□□□□ -1.49
CCDC88A-213ENST00000476903 GTF3AQ92664 365 aaKnown RBP5.77□□□□□ -1.49
CCDC88A-213ENST00000476903 ELMOD3Q96FG2 381 aa5.77□□□□□ -1.49
CCDC88A-213ENST00000476903 TIMD4Q96H15 378 aa5.77□□□□□ -1.49
CCDC88A-213ENST00000476903 CCDC140Q96MF4 163 aa5.77□□□□□ -1.49
CCDC88A-213ENST00000476903 COG8Q96MW5 612 aa5.77□□□□□ -1.49
CCDC88A-213ENST00000476903 FUZQ9BT04 418 aa5.77□□□□□ -1.49
CCDC88A-213ENST00000476903 EGLN1Q9GZT9 426 aa5.77□□□□□ -1.49
CCDC88A-213ENST00000476903 RACGAP1Q9H0H5 632 aa5.77□□□□□ -1.49
CCDC88A-213ENST00000476903 RERGLQ9H628 205 aa5.77□□□□□ -1.49
CCDC88A-213ENST00000476903 IL1RAPQ9NPH3 570 aa5.77□□□□□ -1.49
CCDC88A-213ENST00000476903 TUBG2Q9NRH3 451 aa5.77□□□□□ -1.49
CCDC88A-213ENST00000476903 ARL8BQ9NVJ2 186 aa5.77□□□□□ -1.49
CCDC88A-213ENST00000476903 TBCCD1Q9NVR7 557 aa5.77□□□□□ -1.49
CCDC88A-213ENST00000476903 PLEK2Q9NYT0 353 aa5.77□□□□□ -1.49
CCDC88A-213ENST00000476903 IL20RAQ9UHF4 553 aa5.77□□□□□ -1.49
CCDC88A-213ENST00000476903 ZDHHC8Q9ULC8 765 aa5.77□□□□□ -1.49
CCDC88A-213ENST00000476903 TMCC3Q9ULS5 477 aa5.77□□□□□ -1.49
CCDC88A-213ENST00000476903 POLR1DQ9Y2S0 133 aa5.77□□□□□ -1.49
CCDC88A-213ENST00000476903 DOCK11Q5JSL3 2073 aa5.76□□□□□ -1.49
CCDC88A-213ENST00000476903 OR6C6A6NF89 314 aa5.76□□□□□ -1.49
CCDC88A-213ENST00000476903 ZSCAN5BA6NJL1 495 aa5.76□□□□□ -1.49
CCDC88A-213ENST00000476903 FAM157AC9JC47 383 aa5.76□□□□□ -1.49
CCDC88A-213ENST00000476903 IMPA2O14732 288 aa5.76□□□□□ -1.49
CCDC88A-213ENST00000476903 WNT9BO14905 357 aa5.76□□□□□ -1.49
CCDC88A-213ENST00000476903 ARPC3O15145 178 aa5.76□□□□□ -1.49
CCDC88A-213ENST00000476903 OR10H3O60404 316 aa5.76□□□□□ -1.49
CCDC88A-213ENST00000476903 KRT36O76013 467 aa5.76□□□□□ -1.49
CCDC88A-213ENST00000476903 MPZL1O95297 269 aa5.76□□□□□ -1.49
CCDC88A-213ENST00000476903 PPP1R3DO95685 299 aa5.76□□□□□ -1.49
CCDC88A-213ENST00000476903 RENP00797 406 aa5.76□□□□□ -1.49
CCDC88A-213ENST00000476903 ANPEPP15144 967 aa5.76□□□□□ -1.49
CCDC88A-213ENST00000476903 TNFSF4P23510 183 aa5.76□□□□□ -1.49
CCDC88A-213ENST00000476903 LMO1P25800 156 aa5.76□□□□□ -1.49
CCDC88A-213ENST00000476903 RRM2P31350 389 aa5.76□□□□□ -1.49
CCDC88A-213ENST00000476903 MSX2P35548 267 aaPredicted RBP5.76□□□□□ -1.49
CCDC88A-213ENST00000476903 SRP14P37108 136 aaKnown RBP5.76□□□□□ -1.49
CCDC88A-213ENST00000476903 CDKN2AP42771 156 aaKnown RBP5.76□□□□□ -1.49
CCDC88A-213ENST00000476903 CENPAP49450 140 aa5.76□□□□□ -1.49
CCDC88A-213ENST00000476903 RGS6P49758 472 aa5.76□□□□□ -1.49
CCDC88A-213ENST00000476903 LMO4P61968 165 aa5.76□□□□□ -1.49
CCDC88A-213ENST00000476903 SLC3A1Q07837 685 aa5.76□□□□□ -1.49
CCDC88A-213ENST00000476903 RFX4Q33E94 735 aa5.76□□□□□ -1.49
CCDC88A-213ENST00000476903 MTX3Q5HYI7 312 aa5.76□□□□□ -1.49
CCDC88A-213ENST00000476903 TMEM255AQ5JRV8 349 aa5.76□□□□□ -1.49
CCDC88A-213ENST00000476903 AVPI1Q5T686 147 aa5.76□□□□□ -1.49
CCDC88A-213ENST00000476903 LEG1Q6P5S2 330 aa5.76□□□□□ -1.49
CCDC88A-213ENST00000476903 PTCHD4Q6ZW05 846 aa5.76□□□□□ -1.49
CCDC88A-213ENST00000476903 ZDHHC21Q8IVQ6 265 aa5.76□□□□□ -1.49
CCDC88A-213ENST00000476903 OR51F2Q8NH61 342 aa5.76□□□□□ -1.49
CCDC88A-213ENST00000476903 OR1F12Q8NHA8 337 aa5.76□□□□□ -1.49
CCDC88A-213ENST00000476903 GNPDA2Q8TDQ7 276 aa5.76□□□□□ -1.49
CCDC88A-213ENST00000476903 RAB1CQ92928 201 aa5.76□□□□□ -1.49
CCDC88A-213ENST00000476903 TMEM186Q96B77 213 aa5.76□□□□□ -1.49
CCDC88A-213ENST00000476903 RAB39BQ96DA2 213 aa5.76□□□□□ -1.49
CCDC88A-213ENST00000476903 ERMAPQ96PL5 475 aaPredicted RBP5.76□□□□□ -1.49
CCDC88A-213ENST00000476903 DCLRE1CQ96SD1 692 aaKnown RBP5.76□□□□□ -1.49
CCDC88A-213ENST00000476903 GPA33Q99795 319 aa5.76□□□□□ -1.49
CCDC88A-213ENST00000476903 IFT27Q9BW83 186 aa5.76□□□□□ -1.49
CCDC88A-213ENST00000476903 NUAK2Q9H093 628 aa5.76□□□□□ -1.49
CCDC88A-213ENST00000476903 OR52D1Q9H346 318 aa5.76□□□□□ -1.49
CCDC88A-213ENST00000476903 ZNF665Q9H7R5 613 aa5.76□□□□□ -1.49
CCDC88A-213ENST00000476903 HIF1ANQ9NWT6 349 aa5.76□□□□□ -1.49
CCDC88A-213ENST00000476903 TREM2Q9NZC2 230 aa5.76□□□□□ -1.49
CCDC88A-213ENST00000476903 ATPIF1Q9UII2 106 aa5.76□□□□□ -1.49
CCDC88A-213ENST00000476903 GRIP1Q9Y3R0 1128 aa5.76□□□□□ -1.49
CCDC88A-213ENST00000476903 ARHGAP32A7KAX9 2087 aa5.75□□□□□ -1.49
CCDC88A-213ENST00000476903 TRAV20A0A0B4J274 112 aa5.75□□□□□ -1.49
CCDC88A-213ENST00000476903 RER1O15258 196 aa5.75□□□□□ -1.49
CCDC88A-213ENST00000476903 IDH3BO43837 385 aa5.75□□□□□ -1.49
CCDC88A-213ENST00000476903 CD55P08174 381 aa5.75□□□□□ -1.49
CCDC88A-213ENST00000476903 HIST1H1CP16403 213 aaKnown RBP5.75□□□□□ -1.49
CCDC88A-213ENST00000476903 KITLGP21583 273 aa5.75□□□□□ -1.49
CCDC88A-213ENST00000476903 GSSP48637 474 aa5.75□□□□□ -1.49
CCDC88A-213ENST00000476903 TNFAIP6P98066 277 aaPredicted RBP5.75□□□□□ -1.49
CCDC88A-213ENST00000476903 TSPAN31Q12999 210 aa5.75□□□□□ -1.49
CCDC88A-213ENST00000476903 PSG7Q13046 419 aa5.75□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms