RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 ZNF260Q3ZCT1 412 aa13.34□□□□□ -0.27
LDLR-202ENST00000455727 TRIM61Q5EBN2 209 aa13.34□□□□□ -0.27
LDLR-202ENST00000455727 PGAP1Q75T13 922 aa13.34□□□□□ -0.27
LDLR-202ENST00000455727 OR52B4Q8NGK2 314 aa13.34□□□□□ -0.27
LDLR-202ENST00000455727 OR51E1Q8TCB6 317 aa13.34□□□□□ -0.27
LDLR-202ENST00000455727 CCDC107Q8WV48 283 aa13.34□□□□□ -0.27
LDLR-202ENST00000455727 FAM46BQ96A09 425 aa13.34□□□□□ -0.27
LDLR-202ENST00000455727 B3GNT4Q9C0J1 378 aa13.34□□□□□ -0.27
LDLR-202ENST00000455727 IRF2BPLQ9H1B7 796 aa13.34□□□□□ -0.27
LDLR-202ENST00000455727 EXO5Q9H790 373 aa13.34□□□□□ -0.27
LDLR-202ENST00000455727 NSG1A0A0A6YYJ2 146 aa13.33□□□□□ -0.28
LDLR-202ENST00000455727 ZNF736B4DX44 427 aaPredicted RBP13.33□□□□□ -0.28
LDLR-202ENST00000455727 ZIC3O60481 467 aa13.33□□□□□ -0.28
LDLR-202ENST00000455727 NOS1APO75052 506 aaPredicted RBP13.33□□□□□ -0.28
LDLR-202ENST00000455727 RGS11O94810 467 aa13.33□□□□□ -0.28
LDLR-202ENST00000455727 IFNA7P01567 189 aa13.33□□□□□ -0.28
LDLR-202ENST00000455727 GP1BAP07359 652 aa13.33□□□□□ -0.28
LDLR-202ENST00000455727 CD63P08962 238 aa13.33□□□□□ -0.28
LDLR-202ENST00000455727 ZNF17P17021 662 aa13.33□□□□□ -0.28
LDLR-202ENST00000455727 CLDN17P56750 224 aa13.33□□□□□ -0.28
LDLR-202ENST00000455727 ZXDAP98168 799 aa13.33□□□□□ -0.28
LDLR-202ENST00000455727 UNC119Q13432 240 aa13.33□□□□□ -0.28
LDLR-202ENST00000455727 C10orf128Q5T292 105 aa13.33□□□□□ -0.28
LDLR-202ENST00000455727 MUC20Q8N307 709 aaPredicted RBP13.33□□□□□ -0.28
LDLR-202ENST00000455727 OR2AK2Q8NG84 335 aa13.33□□□□□ -0.28
LDLR-202ENST00000455727 PNPLA2Q96AD5 504 aa13.33□□□□□ -0.28
LDLR-202ENST00000455727 GNRHR2Q96P88 292 aa13.33□□□□□ -0.28
LDLR-202ENST00000455727 SLC39A1Q9NY26 324 aa13.33□□□□□ -0.28
LDLR-202ENST00000455727 LINC00862A6NCI5 91 aa13.33□□□□□ -0.28
LDLR-202ENST00000455727 B4E171 279 aa13.33□□□□□ -0.28
LDLR-202ENST00000455727 RER1O15258 196 aa13.33□□□□□ -0.28
LDLR-202ENST00000455727 MPC2O95563 127 aa13.33□□□□□ -0.28
LDLR-202ENST00000455727 ZNF735P0CB33 412 aa13.33□□□□□ -0.28
LDLR-202ENST00000455727 ZNF20P17024 532 aa13.33□□□□□ -0.28
LDLR-202ENST00000455727 KLK2P20151 261 aa13.33□□□□□ -0.28
LDLR-202ENST00000455727 FOLR3P41439 243 aa13.33□□□□□ -0.28
LDLR-202ENST00000455727 TSPAN7P41732 249 aa13.33□□□□□ -0.28
LDLR-202ENST00000455727 ZNF121P58317 390 aaPredicted RBP13.33□□□□□ -0.28
LDLR-202ENST00000455727 MEF2DQ14814 521 aa13.33□□□□□ -0.28
LDLR-202ENST00000455727 FOXL2NBQ6ZUU3 175 aa13.33□□□□□ -0.28
LDLR-202ENST00000455727 C1orf210Q8IVY1 113 aa13.33□□□□□ -0.28
LDLR-202ENST00000455727 OR8B12Q8NGG6 310 aa13.33□□□□□ -0.28
LDLR-202ENST00000455727 TMEM54Q969K7 222 aa13.33□□□□□ -0.28
LDLR-202ENST00000455727 GAL3ST1Q99999 423 aa13.33□□□□□ -0.28
LDLR-202ENST00000455727 NAA11Q9BSU3 229 aaPredicted RBP13.33□□□□□ -0.28
LDLR-202ENST00000455727 EDEM2Q9BV94 578 aa13.33□□□□□ -0.28
LDLR-202ENST00000455727 MYEF2Q9P2K5 600 aaKnown RBP13.33□□□□□ -0.28
LDLR-202ENST00000455727 NCOA6Q14686 2063 aaPredicted RBP13.32□□□□□ -0.28
LDLR-202ENST00000455727 CBR3O75828 277 aa13.32□□□□□ -0.28
LDLR-202ENST00000455727 VSIG8P0DPA2 414 aa13.32□□□□□ -0.28
LDLR-202ENST00000455727 MPZP25189 248 aa13.32□□□□□ -0.28
LDLR-202ENST00000455727 SSTR2P30874 369 aa13.32□□□□□ -0.28
LDLR-202ENST00000455727 ZNF93P35789 620 aaPredicted RBP13.32□□□□□ -0.28
LDLR-202ENST00000455727 PRKXP51817 358 aa13.32□□□□□ -0.28
LDLR-202ENST00000455727 CAMK2BQ13554 666 aa13.32□□□□□ -0.28
LDLR-202ENST00000455727 IDO2Q6ZQW0 420 aa13.32□□□□□ -0.28
LDLR-202ENST00000455727 GALNT16Q8N428 558 aa13.32□□□□□ -0.28
LDLR-202ENST00000455727 TMEM156Q8N614 296 aa13.32□□□□□ -0.28
LDLR-202ENST00000455727 ACBD4Q8NC06 268 aa13.32□□□□□ -0.28
LDLR-202ENST00000455727 OR13C9Q8NGT0 318 aa13.32□□□□□ -0.28
LDLR-202ENST00000455727 TMEM41AQ96HV5 264 aa13.32□□□□□ -0.28
LDLR-202ENST00000455727 DPCDQ9BVM2 203 aaPredicted RBP13.32□□□□□ -0.28
LDLR-202ENST00000455727 SLC2A8Q9NY64 477 aa13.32□□□□□ -0.28
LDLR-202ENST00000455727 KLK13Q9UKR3 277 aa13.32□□□□□ -0.28
LDLR-202ENST00000455727 KIAA1549Q9HCM3 1950 aa13.32□□□□□ -0.28
LDLR-202ENST00000455727 MED12Q93074 2177 aa13.32□□□□□ -0.28
LDLR-202ENST00000455727 TEX51A0A1B0GUA7 166 aa13.31□□□□□ -0.28
LDLR-202ENST00000455727 TMEM235A6NFC5 223 aa13.31□□□□□ -0.28
LDLR-202ENST00000455727 WIPF3A6NGB9 483 aa13.31□□□□□ -0.28
LDLR-202ENST00000455727 TMEM14DPA8MWL7 114 aa13.31□□□□□ -0.28
LDLR-202ENST00000455727 AMY2AP04746 511 aa13.31□□□□□ -0.28
LDLR-202ENST00000455727 GUCA1AP43080 201 aaPredicted RBP13.31□□□□□ -0.28
LDLR-202ENST00000455727 OR3A3P47888 321 aa13.31□□□□□ -0.28
LDLR-202ENST00000455727 CSNK1A1P48729 337 aa13.31□□□□□ -0.28
LDLR-202ENST00000455727 CX3CR1P49238 355 aa13.31□□□□□ -0.28
LDLR-202ENST00000455727 CSNK2A1P68400 391 aaPredicted RBP13.31□□□□□ -0.28
LDLR-202ENST00000455727 DOK3Q7L591 496 aa13.31□□□□□ -0.28
LDLR-202ENST00000455727 OR2W3Q7Z3T1 314 aa13.31□□□□□ -0.28
LDLR-202ENST00000455727 ABHD12BQ7Z5M8 362 aaPredicted RBP13.31□□□□□ -0.28
LDLR-202ENST00000455727 ZNF584Q8IVC4 421 aa13.31□□□□□ -0.28
LDLR-202ENST00000455727 SGCZQ96LD1 299 aa13.31□□□□□ -0.28
LDLR-202ENST00000455727 TINAGL1Q9GZM7 467 aaPredicted RBP13.31□□□□□ -0.28
LDLR-202ENST00000455727 ZMAT3Q9HA38 289 aaKnown RBP13.31□□□□□ -0.28
LDLR-202ENST00000455727 ZNF160Q9HCG1 818 aa13.31□□□□□ -0.28
LDLR-202ENST00000455727 GPR84Q9NQS5 396 aa13.31□□□□□ -0.28
LDLR-202ENST00000455727 HPF1Q9NWY4 346 aa13.31□□□□□ -0.28
LDLR-202ENST00000455727 OPN4Q9UHM6 478 aa13.31□□□□□ -0.28
LDLR-202ENST00000455727 TMEM82A0PJX8 343 aa13.31□□□□□ -0.28
LDLR-202ENST00000455727 HMSDA8MTL9 139 aa13.31□□□□□ -0.28
LDLR-202ENST00000455727 H3BUI4 141 aa13.31□□□□□ -0.28
LDLR-202ENST00000455727 M0R233 179 aa13.31□□□□□ -0.28
LDLR-202ENST00000455727 MSR1P21757 451 aa13.31□□□□□ -0.28
LDLR-202ENST00000455727 NFYAP23511 347 aaPredicted RBP13.31□□□□□ -0.28
LDLR-202ENST00000455727 RAC1P63000 192 aa13.31□□□□□ -0.28
LDLR-202ENST00000455727 EIF3IQ13347 325 aaKnown RBP13.31□□□□□ -0.28
LDLR-202ENST00000455727 ZMYND11Q15326 602 aa13.31□□□□□ -0.28
LDLR-202ENST00000455727 GRK1Q15835 563 aa13.31□□□□□ -0.28
LDLR-202ENST00000455727 RAET1LQ5VY80 246 aa13.31□□□□□ -0.28
LDLR-202ENST00000455727 ANGPTL5Q86XS5 388 aa13.31□□□□□ -0.28
LDLR-202ENST00000455727 INTS12Q96CB8 462 aaKnown RBP13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 117.9 ms