RNA–Protein interactions for RNA: ENST00000450867.1

COL3A1-203, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL3A1, Length 268 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-203ENST00000450867 VWC2LB2RUY7 222 aa12.24□□□□□ -0.45
COL3A1-203ENST00000450867 NCR1O76036 304 aa12.24□□□□□ -0.45
COL3A1-203ENST00000450867 LY6HO94772 140 aa12.24□□□□□ -0.45
COL3A1-203ENST00000450867 LCATP04180 440 aa12.24□□□□□ -0.45
COL3A1-203ENST00000450867 CD55P08174 381 aa12.24□□□□□ -0.45
COL3A1-203ENST00000450867 NAT2P11245 290 aa12.24□□□□□ -0.45
COL3A1-203ENST00000450867 GABRB1P18505 474 aa12.24□□□□□ -0.45
COL3A1-203ENST00000450867 GIFP27352 417 aa12.24□□□□□ -0.45
COL3A1-203ENST00000450867 ROM1Q03395 351 aa12.24□□□□□ -0.45
COL3A1-203ENST00000450867 POU4F2Q12837 409 aa12.24□□□□□ -0.45
COL3A1-203ENST00000450867 CDK5R2Q13319 367 aa12.24□□□□□ -0.45
COL3A1-203ENST00000450867 TNK1Q13470 666 aa12.24□□□□□ -0.45
COL3A1-203ENST00000450867 OCLNQ16625 522 aa12.24□□□□□ -0.45
COL3A1-203ENST00000450867 ALKBH6Q3KRA9 238 aa12.24□□□□□ -0.45
COL3A1-203ENST00000450867 ZIK1Q3SY52 487 aaPredicted RBP12.24□□□□□ -0.45
COL3A1-203ENST00000450867 ZMAT1Q5H9K5 638 aa12.24□□□□□ -0.45
COL3A1-203ENST00000450867 FAM209AQ5JX71 171 aa12.24□□□□□ -0.45
COL3A1-203ENST00000450867 ZNF786Q8N393 782 aa12.24□□□□□ -0.45
COL3A1-203ENST00000450867 FAM168AQ92567 244 aa12.24□□□□□ -0.45
COL3A1-203ENST00000450867 SPSB4Q96A44 273 aa12.24□□□□□ -0.45
COL3A1-203ENST00000450867 CMBLQ96DG6 245 aa12.24□□□□□ -0.45
COL3A1-203ENST00000450867 C18orf12Q96KH6 178 aa12.24□□□□□ -0.45
COL3A1-203ENST00000450867 ZNF582Q96NG8 517 aaPredicted RBP12.24□□□□□ -0.45
COL3A1-203ENST00000450867 DIRC2Q96SL1 478 aa12.24□□□□□ -0.45
COL3A1-203ENST00000450867 TPK1Q9H3S4 243 aa12.24□□□□□ -0.45
COL3A1-203ENST00000450867 CENPMQ9NSP4 180 aa12.24□□□□□ -0.45
COL3A1-203ENST00000450867 FAM118AQ9NWS6 357 aa12.24□□□□□ -0.45
COL3A1-203ENST00000450867 IMPAD1Q9NX62 359 aa12.24□□□□□ -0.45
COL3A1-203ENST00000450867 SMPD3Q9NY59 655 aaPredicted RBP12.24□□□□□ -0.45
COL3A1-203ENST00000450867 H2AFY2Q9P0M6 372 aaPredicted RBP12.24□□□□□ -0.45
COL3A1-203ENST00000450867 ZDHHC8Q9ULC8 765 aa12.24□□□□□ -0.45
COL3A1-203ENST00000450867 DYSFO75923 2080 aa12.23□□□□□ -0.45
COL3A1-203ENST00000450867 IGHV4-30-2A0A087WSY4 118 aa12.23□□□□□ -0.45
COL3A1-203ENST00000450867 LOC390937A0A1W2PQ73 354 aa12.23□□□□□ -0.45
COL3A1-203ENST00000450867 PLSCR5A0PG75 271 aa12.23□□□□□ -0.45
COL3A1-203ENST00000450867 ZSCAN5BA6NJL1 495 aa12.23□□□□□ -0.45
COL3A1-203ENST00000450867 IQCF6A8MYZ5 107 aa12.23□□□□□ -0.45
COL3A1-203ENST00000450867 SBK2P0C263 348 aa12.23□□□□□ -0.45
COL3A1-203ENST00000450867 DAOP14920 347 aa12.23□□□□□ -0.45
COL3A1-203ENST00000450867 SLC25A16P16260 332 aa12.23□□□□□ -0.45
COL3A1-203ENST00000450867 ANOS1P23352 680 aa12.23□□□□□ -0.45
COL3A1-203ENST00000450867 PEX2P28328 305 aa12.23□□□□□ -0.45
COL3A1-203ENST00000450867 DCTDP32321 178 aa12.23□□□□□ -0.45
COL3A1-203ENST00000450867 PDLIM4P50479 330 aa12.23□□□□□ -0.45
COL3A1-203ENST00000450867 ZNF81P51508 661 aa12.23□□□□□ -0.45
COL3A1-203ENST00000450867 PRKXP51817 358 aa12.23□□□□□ -0.45
COL3A1-203ENST00000450867 MALLQ13021 153 aa12.23□□□□□ -0.45
COL3A1-203ENST00000450867 GK2Q14410 553 aaPredicted RBP12.23□□□□□ -0.45
COL3A1-203ENST00000450867 TAF13Q15543 124 aa12.23□□□□□ -0.45
COL3A1-203ENST00000450867 TRIP10Q15642 601 aa12.23□□□□□ -0.45
COL3A1-203ENST00000450867 SNAI3Q3KNW1 292 aa12.23□□□□□ -0.45
COL3A1-203ENST00000450867 OGFRL1Q5TC84 451 aaPredicted RBP12.23□□□□□ -0.45
COL3A1-203ENST00000450867 MEDAGQ5VYS4 303 aa12.23□□□□□ -0.45
COL3A1-203ENST00000450867 KCTD18Q6PI47 426 aaPredicted RBP12.23□□□□□ -0.45
COL3A1-203ENST00000450867 UBASH3BQ8TF42 649 aa12.23□□□□□ -0.45
COL3A1-203ENST00000450867 ASB17Q8WXJ9 295 aa12.23□□□□□ -0.45
COL3A1-203ENST00000450867 RFKQ969G6 155 aa12.23□□□□□ -0.45
COL3A1-203ENST00000450867 RHNO1Q9BSD3 238 aa12.23□□□□□ -0.45
COL3A1-203ENST00000450867 REPIN1Q9BWE0 567 aaKnown RBP12.23□□□□□ -0.45
COL3A1-203ENST00000450867 OPA3Q9H6K4 179 aa12.23□□□□□ -0.45
COL3A1-203ENST00000450867 SP140LQ9H930 580 aa12.23□□□□□ -0.45
COL3A1-203ENST00000450867 CLN6Q9NWW5 311 aa12.23□□□□□ -0.45
COL3A1-203ENST00000450867 PTTG3PQ9NZH4 202 aa12.23□□□□□ -0.45
COL3A1-203ENST00000450867 LAMP5Q9UJQ1 280 aa12.23□□□□□ -0.45
COL3A1-203ENST00000450867 GMPPBQ9Y5P6 360 aa12.23□□□□□ -0.45
COL3A1-203ENST00000450867 SETD2Q9BYW2 2564 aaPredicted RBP12.22□□□□□ -0.45
COL3A1-203ENST00000450867 LOC100130705A0A1B0GUX0 176 aa12.22□□□□□ -0.45
COL3A1-203ENST00000450867 ERICH4A6NGS2 130 aa12.22□□□□□ -0.45
COL3A1-203ENST00000450867 PRR32B1ATL7 298 aa12.22□□□□□ -0.45
COL3A1-203ENST00000450867 H7C1Q1 480 aa12.22□□□□□ -0.45
COL3A1-203ENST00000450867 PHYHO14832 338 aa12.22□□□□□ -0.45
COL3A1-203ENST00000450867 XRCC2O43543 280 aa12.22□□□□□ -0.45
COL3A1-203ENST00000450867 TIMM8AO60220 97 aaPredicted RBP12.22□□□□□ -0.45
COL3A1-203ENST00000450867 MPZL2O60487 215 aa12.22□□□□□ -0.45
COL3A1-203ENST00000450867 ZNF254O75437 659 aa12.22□□□□□ -0.45
COL3A1-203ENST00000450867 IGHV1-46P01743 117 aa12.22□□□□□ -0.45
COL3A1-203ENST00000450867 HPXP02790 462 aa12.22□□□□□ -0.45
COL3A1-203ENST00000450867 MRPL3P09001 348 aaKnown RBP12.22□□□□□ -0.45
COL3A1-203ENST00000450867 H2BFMP0C1H6 154 aa12.22□□□□□ -0.45
COL3A1-203ENST00000450867 SELEP16581 610 aa12.22□□□□□ -0.45
COL3A1-203ENST00000450867 HSD11B1P28845 292 aa12.22□□□□□ -0.45
COL3A1-203ENST00000450867 SLC6A9P48067 706 aa12.22□□□□□ -0.45
COL3A1-203ENST00000450867 CX3CR1P49238 355 aa12.22□□□□□ -0.45
COL3A1-203ENST00000450867 PSMA6P60900 246 aaKnown RBP12.22□□□□□ -0.45
COL3A1-203ENST00000450867 RIN1Q13671 783 aa12.22□□□□□ -0.45
COL3A1-203ENST00000450867 HLXQ14774 488 aaPredicted RBP12.22□□□□□ -0.45
COL3A1-203ENST00000450867 Q6ZR03 302 aa12.22□□□□□ -0.45
COL3A1-203ENST00000450867 CIARTQ8N365 385 aaPredicted RBP12.22□□□□□ -0.45
COL3A1-203ENST00000450867 ZNF283Q8N7M2 679 aa12.22□□□□□ -0.45
COL3A1-203ENST00000450867 OR8G5Q8NG78 346 aa12.22□□□□□ -0.45
COL3A1-203ENST00000450867 OR52H1Q8NGJ2 320 aa12.22□□□□□ -0.45
COL3A1-203ENST00000450867 RHOXF1Q8NHV9 184 aa12.22□□□□□ -0.45
COL3A1-203ENST00000450867 THEM6Q8WUY1 208 aa12.22□□□□□ -0.45
COL3A1-203ENST00000450867 GTF3AQ92664 365 aaKnown RBP12.22□□□□□ -0.45
COL3A1-203ENST00000450867 UBE2FQ969M7 185 aa12.22□□□□□ -0.45
COL3A1-203ENST00000450867 OR8B4Q96RC9 309 aa12.22□□□□□ -0.45
COL3A1-203ENST00000450867 REG4Q9BYZ8 158 aa12.22□□□□□ -0.45
COL3A1-203ENST00000450867 DNAJC27Q9NZQ0 273 aa12.22□□□□□ -0.45
COL3A1-203ENST00000450867 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.22□□□□□ -0.45
COL3A1-203ENST00000450867 COPS3Q9UNS2 423 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms