RNA–Protein interactions for RNA: ENST00000441089.1

PTPN4-206, Transcript of protein tyrosine phosphatase, non-receptor type 4, human

TSL 3

Gene PTPN4, Length 671 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN4-206	ENST00000441089	PRR32	B1ATL7	298 aa		4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089	PTGES3L	E9PB15	166 aa		4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089	PRR23D1	E9PI22	279 aa	Predicted RBP	4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089		J3QRE1	110 aa		4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089	NDUFS8	O00217	210 aa		4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089	MPZL2	O60487	215 aa		4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089	EIF1B	O60739	113 aa	Known RBP	4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089	FAM20B	O75063	409 aa		4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089	UPK3A	O75631	287 aa		4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089	TNFSF13	O75888	250 aa		4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089	ZNF432	O94892	652 aa		4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089	TNFAIP8	O95379	198 aa		4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089	BCL10	O95999	233 aa		4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089	IFNG	P01579	166 aa		4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089	TF	P02787	698 aa		4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089	PGA4	P0DJD7	388 aa		4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089	PGA3	P0DJD8	388 aa		4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089	PRR23D2	P0DMB1	279 aa	Predicted RBP	4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089	GAA	P10253	952 aa		4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089	CTLA4	P16410	223 aa		4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089	ZNF3	P17036	446 aa		4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089	ZNF43	P17038	809 aa		4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089	SPI1	P17947	270 aa		4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089	LMO1	P25800	156 aa		4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089	C21orf33	P30042	268 aa	Predicted RBP	4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089	HTR1F	P30939	366 aa		4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089	DAP3	P51398	398 aa	Known RBP	4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089	SLC16A1	P53985	500 aa		4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089	CLDN17	P56750	224 aa		4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089	GABARAPL2	P60520	117 aa		4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089	RASGEF1B	Q0VAM2	473 aa		4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089	CAMK2D	Q13557	499 aa		4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089	C1D	Q13901	141 aa	Known RBP	4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089	GGTLC2	Q14390	218 aa		4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089	IRF3	Q14653	427 aa		4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089	HIST3H3	Q16695	136 aa		4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089	PDSS1	Q5T2R2	415 aa		4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089	MEDAG	Q5VYS4	303 aa		4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089	CARD17	Q5XLA6	110 aa		4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089	TMEM225	Q6GV28	225 aa		4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089	ZNF773	Q6PK81	442 aa		4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089	SLC25A47	Q6Q0C1	308 aa		4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089	AHSA2	Q719I0	299 aa		4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089	MEPCE	Q7L2J0	689 aa	Known RBP	4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089	LINGO2	Q7L985	606 aa		4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089	GPAT4	Q86UL3	456 aa		4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089	DTX2	Q86UW9	622 aa		4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089	ZBTB46	Q86UZ6	589 aa		4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089	JAZF1	Q86VZ6	243 aa		4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089	TUSC5	Q8IXB3	177 aa		4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089	TMEM123	Q8N131	208 aa		4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089	NOXO1	Q8NFA2	376 aa		4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089	OR5AN1	Q8NGI8	311 aa		4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089	OR51L1	Q8NGJ5	315 aa		4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089	OR52I1	Q8NGK6	324 aa		4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089	OR6X1	Q8NH79	312 aa		4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089	C10orf105	Q8TEF2	133 aa		4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089	TMEM54	Q969K7	222 aa		4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089	CPNE4	Q96A23	557 aa	Predicted RBP	4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089	OTULIN	Q96BN8	352 aa		4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089	ZHX1-C8orf76	Q96EF9	292 aa		4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089	PLEKHA8	Q96JA3	519 aa		4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089	CLUHP3	Q96NS8	147 aa		4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089	FOXN4	Q96NZ1	517 aa		4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089	OR2M2	Q96R28	347 aa		4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089	SNX18	Q96RF0	628 aa		4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089	TEAD3	Q99594	435 aa		4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089	ZNF649	Q9BS31	505 aa		4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089	TRAF4	Q9BUZ4	470 aa	Predicted RBP	4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089	SF3B5	Q9BWJ5	86 aa	Known RBP	4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089	YTHDF1	Q9BYJ9	559 aa	Known RBP	4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089	PRRG3	Q9BZD7	231 aa		4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089	NUAK2	Q9H093	628 aa		4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089	OR51V1	Q9H2C8	321 aa		4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089	NGB	Q9NPG2	151 aa		4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089	RPRD1B	Q9NQG5	326 aa	Known RBP	4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089	MRPS18A	Q9NVS2	196 aa	Known RBP	4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089	AURKAIP1	Q9NWT8	199 aa	Predicted RBP	4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089	CLEC4A	Q9UMR7	237 aa		4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089	B9D1	Q9UPM9	204 aa		4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089	NOX1	Q9Y5S8	564 aa		4.12	□□□□□ -1.75
PTPN4-206	ENST00000441089	RYR1	P21817	5038 aa		4.11	□□□□□ -1.75
PTPN4-206	ENST00000441089	EFCAB10	A6NFE3	127 aa		4.11	□□□□□ -1.75
PTPN4-206	ENST00000441089	TVP23A	A6NH52	213 aa		4.11	□□□□□ -1.75
PTPN4-206	ENST00000441089		A6NIZ1	184 aa		4.11	□□□□□ -1.75
PTPN4-206	ENST00000441089	PLXNB1	O43157	2135 aa		4.11	□□□□□ -1.75
PTPN4-206	ENST00000441089	SELENOF	O60613	162 aa		4.11	□□□□□ -1.75
PTPN4-206	ENST00000441089	SLC16A7	O60669	478 aa		4.11	□□□□□ -1.75
PTPN4-206	ENST00000441089	GLCE	O94923	617 aa		4.11	□□□□□ -1.75
PTPN4-206	ENST00000441089	VAMP5	O95183	116 aa		4.11	□□□□□ -1.75
PTPN4-206	ENST00000441089	MPZL1	O95297	269 aa		4.11	□□□□□ -1.75
PTPN4-206	ENST00000441089	SYNGR4	O95473	234 aa		4.11	□□□□□ -1.75
PTPN4-206	ENST00000441089	REN	P00797	406 aa		4.11	□□□□□ -1.75
PTPN4-206	ENST00000441089	TFAP2A	P05549	437 aa		4.11	□□□□□ -1.75
PTPN4-206	ENST00000441089	CDK1	P06493	297 aa		4.11	□□□□□ -1.75
PTPN4-206	ENST00000441089	MRPL3	P09001	348 aa	Known RBP	4.11	□□□□□ -1.75
PTPN4-206	ENST00000441089	SBK2	P0C263	348 aa		4.11	□□□□□ -1.75
PTPN4-206	ENST00000441089	PIP	P12273	146 aa	Predicted RBP	4.11	□□□□□ -1.75
PTPN4-206	ENST00000441089	ATP6V1B1	P15313	513 aa		4.11	□□□□□ -1.75
PTPN4-206	ENST00000441089	ZFP36	P26651	326 aa	Known RBP	4.11	□□□□□ -1.75

Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms