RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 PRPH2P23942 346 aa15.55■□□□□ 0.08
PTPRF-209ENST00000438120 HRH1P35367 487 aa15.55■□□□□ 0.08
PTPRF-209ENST00000438120 FAM53BQ14153 422 aa15.55■□□□□ 0.08
PTPRF-209ENST00000438120 SLC17A1Q14916 467 aa15.55■□□□□ 0.08
PTPRF-209ENST00000438120 STAC2Q6ZMT1 411 aa15.55■□□□□ 0.08
PTPRF-209ENST00000438120 TMEM43Q9BTV4 400 aa15.55■□□□□ 0.08
PTPRF-209ENST00000438120 MOB1AQ9H8S9 216 aa15.55■□□□□ 0.08
PTPRF-209ENST00000438120 EVPLQ92817 2033 aa15.55■□□□□ 0.08
PTPRF-209ENST00000438120 A0A0A6YYD5 115 aa15.54■□□□□ 0.08
PTPRF-209ENST00000438120 RAF1P04049 648 aa15.54■□□□□ 0.08
PTPRF-209ENST00000438120 TVP23CQ96ET8 276 aa15.54■□□□□ 0.08
PTPRF-209ENST00000438120 LINC00615Q96LM1 132 aaPredicted RBP15.54■□□□□ 0.08
PTPRF-209ENST00000438120 CDCA4Q9BXL8 241 aa15.54■□□□□ 0.08
PTPRF-209ENST00000438120 MED9Q9NWA0 146 aa15.54■□□□□ 0.08
PTPRF-209ENST00000438120 LRP5LA4QPB2 252 aa15.54■□□□□ 0.08
PTPRF-209ENST00000438120 AIPO00170 330 aa15.54■□□□□ 0.08
PTPRF-209ENST00000438120 FCGR2CP31995 323 aa15.54■□□□□ 0.08
PTPRF-209ENST00000438120 UBE2G2P60604 165 aa15.54■□□□□ 0.08
PTPRF-209ENST00000438120 EGR3Q06889 387 aa15.54■□□□□ 0.08
PTPRF-209ENST00000438120 UBALD2Q8IYN6 164 aa15.54■□□□□ 0.08
PTPRF-209ENST00000438120 MVB12AQ96EY5 273 aa15.54■□□□□ 0.08
PTPRF-209ENST00000438120 SLC35E1Q96K37 410 aa15.54■□□□□ 0.08
PTPRF-209ENST00000438120 AUNIPQ9H7T9 357 aa15.54■□□□□ 0.08
PTPRF-209ENST00000438120 SIAEQ9HAT2 523 aa15.54■□□□□ 0.08
PTPRF-209ENST00000438120 SPACA1Q9HBV2 294 aa15.54■□□□□ 0.08
PTPRF-209ENST00000438120 BCL2L10Q9HD36 194 aa15.54■□□□□ 0.08
PTPRF-209ENST00000438120 NOVA1P51513 510 aaKnown RBP15.54■□□□□ 0.08
PTPRF-209ENST00000438120 TMEM268Q5VZI3 342 aa15.54■□□□□ 0.08
PTPRF-209ENST00000438120 RIMKLAQ8IXN7 391 aa15.54■□□□□ 0.08
PTPRF-209ENST00000438120 CD3DP04234 171 aa15.54■□□□□ 0.08
PTPRF-209ENST00000438120 ZNF573Q86YE8 665 aa15.54■□□□□ 0.08
PTPRF-209ENST00000438120 RBPMSQ93062 196 aaKnown RBP15.54■□□□□ 0.08
PTPRF-209ENST00000438120 KTI12Q96EK9 354 aaPredicted RBP15.54■□□□□ 0.08
PTPRF-209ENST00000438120 A0A1W2PR80 420 aa15.54■□□□□ 0.08
PTPRF-209ENST00000438120 KRBOX1C9JBD0 128 aa15.54■□□□□ 0.08
PTPRF-209ENST00000438120 RFX2P48378 723 aa15.54■□□□□ 0.08
PTPRF-209ENST00000438120 MLF1P58340 268 aa15.54■□□□□ 0.08
PTPRF-209ENST00000438120 HAGHQ16775 308 aa15.54■□□□□ 0.08
PTPRF-209ENST00000438120 FAM27D1Q5T7N8 215 aa15.54■□□□□ 0.08
PTPRF-209ENST00000438120 CXorf67Q86X51 503 aaPredicted RBP15.54■□□□□ 0.08
PTPRF-209ENST00000438120 ZDHHC23Q8IYP9 409 aa15.54■□□□□ 0.08
PTPRF-209ENST00000438120 OR11G2Q8NGC1 345 aa15.54■□□□□ 0.08
PTPRF-209ENST00000438120 PLPPR2Q96GM1 343 aa15.54■□□□□ 0.08
PTPRF-209ENST00000438120 JAM3Q9BX67 310 aa15.54■□□□□ 0.08
PTPRF-209ENST00000438120 NMES1Q9C002 83 aa15.54■□□□□ 0.08
PTPRF-209ENST00000438120 A0A0A6YYJ9 748 aa15.53■□□□□ 0.08
PTPRF-209ENST00000438120 FIGNL2A6NMB9 653 aa15.53■□□□□ 0.08
PTPRF-209ENST00000438120 WIPI1Q5MNZ9 446 aaPredicted RBP15.53■□□□□ 0.08
PTPRF-209ENST00000438120 GUSBP11Q6P575 273 aa15.53■□□□□ 0.08
PTPRF-209ENST00000438120 CADM3Q8N126 398 aa15.53■□□□□ 0.08
PTPRF-209ENST00000438120 MARC2Q969Z3 335 aa15.53■□□□□ 0.08
PTPRF-209ENST00000438120 SMIM19Q96E16 107 aa15.53■□□□□ 0.08
PTPRF-209ENST00000438120 PKD1L3Q7Z443 1732 aa15.53■□□□□ 0.08
PTPRF-209ENST00000438120 ZNF724A8MTY0 619 aa15.53■□□□□ 0.08
PTPRF-209ENST00000438120 F2RP25116 425 aa15.53■□□□□ 0.08
PTPRF-209ENST00000438120 PCBP3P57721 371 aaKnown RBP15.53■□□□□ 0.08
PTPRF-209ENST00000438120 LCN15Q6UWW0 184 aa15.53■□□□□ 0.08
PTPRF-209ENST00000438120 OR52H1Q8NGJ2 320 aa15.53■□□□□ 0.08
PTPRF-209ENST00000438120 TRMT61AQ96FX7 289 aaKnown RBP15.53■□□□□ 0.08
PTPRF-209ENST00000438120 IP6K3Q96PC2 410 aa15.53■□□□□ 0.08
PTPRF-209ENST00000438120 AK3Q9UIJ7 227 aa15.53■□□□□ 0.08
PTPRF-209ENST00000438120 SUB1P53999 127 aaKnown RBP eCLIP15.53■□□□□ 0.08
PTPRF-209ENST00000438120 RPS16P62249 146 aaKnown RBP15.53■□□□□ 0.08
PTPRF-209ENST00000438120 CDK5R1Q15078 307 aa15.53■□□□□ 0.08
PTPRF-209ENST00000438120 KIAA1456Q9P272 454 aa15.53■□□□□ 0.08
PTPRF-209ENST00000438120 OR5G3P0C626 314 aa15.53■□□□□ 0.08
PTPRF-209ENST00000438120 HMGN3Q15651 99 aa15.53■□□□□ 0.08
PTPRF-209ENST00000438120 TMEM123Q8N131 208 aa15.53■□□□□ 0.08
PTPRF-209ENST00000438120 HES7Q9BYE0 225 aa15.53■□□□□ 0.08
PTPRF-209ENST00000438120 MAGT1Q9H0U3 335 aa15.53■□□□□ 0.08
PTPRF-209ENST00000438120 SLC6A13Q9NSD5 602 aa15.53■□□□□ 0.08
PTPRF-209ENST00000438120 PLEKHB1Q9UF11 243 aaPredicted RBP15.53■□□□□ 0.08
PTPRF-209ENST00000438120 DDX60LQ5H9U9 1706 aaKnown RBP15.53■□□□□ 0.08
PTPRF-209ENST00000438120 BTBD17A6NE02 478 aa15.53■□□□□ 0.08
PTPRF-209ENST00000438120 IFITM5A6NNB3 132 aa15.53■□□□□ 0.08
PTPRF-209ENST00000438120 LMO7DNF2Z398 122 aa15.53■□□□□ 0.08
PTPRF-209ENST00000438120 H2AFB1P0C5Y9 115 aa15.53■□□□□ 0.08
PTPRF-209ENST00000438120 FAHP16930 419 aa15.53■□□□□ 0.08
PTPRF-209ENST00000438120 ZNF85Q03923 595 aa15.53■□□□□ 0.08
PTPRF-209ENST00000438120 CEACAM16Q2WEN9 425 aa15.53■□□□□ 0.08
PTPRF-209ENST00000438120 ZFP62Q8NB50 900 aaPredicted RBP15.53■□□□□ 0.08
PTPRF-209ENST00000438120 MKRN2OSH3BPM6 223 aa15.52■□□□□ 0.08
PTPRF-209ENST00000438120 MNX1P50219 401 aaPredicted RBP15.52■□□□□ 0.08
PTPRF-209ENST00000438120 TCTN1Q2MV58 587 aa15.52■□□□□ 0.08
PTPRF-209ENST00000438120 BPIFCQ8NFQ6 507 aa15.52■□□□□ 0.08
PTPRF-209ENST00000438120 MARCH1Q8TCQ1 289 aa15.52■□□□□ 0.08
PTPRF-209ENST00000438120 TMEM231Q9H6L2 316 aa15.52■□□□□ 0.08
PTPRF-209ENST00000438120 ST3GAL6Q9Y274 331 aa15.52■□□□□ 0.08
PTPRF-209ENST00000438120 MYO7AQ13402 2215 aa15.52■□□□□ 0.08
PTPRF-209ENST00000438120 MEX3AA1L020 520 aaKnown RBP15.52■□□□□ 0.08
PTPRF-209ENST00000438120 K7EQM0 130 aa15.52■□□□□ 0.08
PTPRF-209ENST00000438120 DHHO43323 396 aa15.52■□□□□ 0.08
PTPRF-209ENST00000438120 XRCC2O43543 280 aa15.52■□□□□ 0.08
PTPRF-209ENST00000438120 UBE2G1P62253 170 aa15.52■□□□□ 0.08
PTPRF-209ENST00000438120 CDC20BQ86Y33 519 aa15.52■□□□□ 0.08
PTPRF-209ENST00000438120 CBR3O75828 277 aa15.52■□□□□ 0.08
PTPRF-209ENST00000438120 TGM1P22735 817 aa15.52■□□□□ 0.08
PTPRF-209ENST00000438120 PLAC9Q5JTB6 97 aa15.52■□□□□ 0.08
PTPRF-209ENST00000438120 DHRS13Q6UX07 377 aa15.52■□□□□ 0.08
PTPRF-209ENST00000438120 PNPLA5Q7Z6Z6 429 aaPredicted RBP15.52■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms