RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 SLAMF6Q96DU3 332 aa12.89□□□□□ -0.35
LIMS3-201ENST00000437679 INTS14Q96SY0 518 aa12.89□□□□□ -0.35
LIMS3-201ENST00000437679 SOX7Q9BT81 388 aa12.89□□□□□ -0.35
LIMS3-201ENST00000437679 BEX2Q9BXY8 128 aa12.89□□□□□ -0.35
LIMS3-201ENST00000437679 SLC25A19Q9HC21 320 aa12.89□□□□□ -0.35
LIMS3-201ENST00000437679 TREM2Q9NZC2 230 aa12.89□□□□□ -0.35
LIMS3-201ENST00000437679 CACNG2Q9Y698 323 aa12.89□□□□□ -0.35
LIMS3-201ENST00000437679 IQCF6A8MYZ5 107 aa12.88□□□□□ -0.35
LIMS3-201ENST00000437679 B4DSR2 109 aa12.88□□□□□ -0.35
LIMS3-201ENST00000437679 ZNF878C9JN71 531 aa12.88□□□□□ -0.35
LIMS3-201ENST00000437679 PSKH1P11801 424 aa12.88□□□□□ -0.35
LIMS3-201ENST00000437679 SLC15A1P46059 708 aa12.88□□□□□ -0.35
LIMS3-201ENST00000437679 DAPP51397 102 aa12.88□□□□□ -0.35
LIMS3-201ENST00000437679 CRISP1P54107 249 aa12.88□□□□□ -0.35
LIMS3-201ENST00000437679 CDH15P55291 814 aa12.88□□□□□ -0.35
LIMS3-201ENST00000437679 EIF2B1Q14232 305 aaKnown RBP12.88□□□□□ -0.35
LIMS3-201ENST00000437679 KLHL12Q53G59 568 aa12.88□□□□□ -0.35
LIMS3-201ENST00000437679 AVPI1Q5T686 147 aa12.88□□□□□ -0.35
LIMS3-201ENST00000437679 SHFQ7M4L6 423 aa12.88□□□□□ -0.35
LIMS3-201ENST00000437679 PEG10Q86TG7 708 aaKnown RBP12.88□□□□□ -0.35
LIMS3-201ENST00000437679 NAA40Q86UY6 237 aa12.88□□□□□ -0.35
LIMS3-201ENST00000437679 CPOQ8IVL8 374 aa12.88□□□□□ -0.35
LIMS3-201ENST00000437679 PARP8Q8N3A8 854 aa12.88□□□□□ -0.35
LIMS3-201ENST00000437679 OR8G5Q8NG78 346 aa12.88□□□□□ -0.35
LIMS3-201ENST00000437679 DUS3LQ96G46 650 aaKnown RBP12.88□□□□□ -0.35
LIMS3-201ENST00000437679 C1orf159Q96HA4 380 aa12.88□□□□□ -0.35
LIMS3-201ENST00000437679 KCNJ15Q99712 375 aa12.88□□□□□ -0.35
LIMS3-201ENST00000437679 SHARPINQ9H0F6 387 aa12.88□□□□□ -0.35
LIMS3-201ENST00000437679 IL19Q9UHD0 177 aa12.88□□□□□ -0.35
LIMS3-201ENST00000437679 WIPI2Q9Y4P8 454 aa12.88□□□□□ -0.35
LIMS3-201ENST00000437679 DYSFO75923 2080 aa12.87□□□□□ -0.35
LIMS3-201ENST00000437679 TANC2Q9HCD6 1990 aa12.87□□□□□ -0.35
LIMS3-201ENST00000437679 WNT9BO14905 357 aa12.87□□□□□ -0.35
LIMS3-201ENST00000437679 PRODHO43272 600 aa12.87□□□□□ -0.35
LIMS3-201ENST00000437679 HNF1AP20823 631 aa12.87□□□□□ -0.35
LIMS3-201ENST00000437679 IGFBP5P24593 272 aa12.87□□□□□ -0.35
LIMS3-201ENST00000437679 OTX1P32242 354 aaPredicted RBP12.87□□□□□ -0.35
LIMS3-201ENST00000437679 PRKXP51817 358 aa12.87□□□□□ -0.35
LIMS3-201ENST00000437679 GRB2P62993 217 aaKnown RBP12.87□□□□□ -0.35
LIMS3-201ENST00000437679 GK2Q14410 553 aaPredicted RBP12.87□□□□□ -0.35
LIMS3-201ENST00000437679 SNAPC1Q16533 368 aa12.87□□□□□ -0.35
LIMS3-201ENST00000437679 SPRNQ5BIV9 151 aa12.87□□□□□ -0.35
LIMS3-201ENST00000437679 TMEM236Q5W0B7 351 aa12.87□□□□□ -0.35
LIMS3-201ENST00000437679 PGAP1Q75T13 922 aa12.87□□□□□ -0.35
LIMS3-201ENST00000437679 SPATC1Q76KD6 591 aa12.87□□□□□ -0.35
LIMS3-201ENST00000437679 ASRGL1Q7L266 308 aa12.87□□□□□ -0.35
LIMS3-201ENST00000437679 MRPL21Q7Z2W9 205 aaKnown RBP12.87□□□□□ -0.35
LIMS3-201ENST00000437679 DPY19L4Q7Z388 723 aa12.87□□□□□ -0.35
LIMS3-201ENST00000437679 PRIMA1Q86XR5 153 aa12.87□□□□□ -0.35
LIMS3-201ENST00000437679 ZDHHC13Q8IUH4 622 aa12.87□□□□□ -0.35
LIMS3-201ENST00000437679 BHLHE23Q8NDY6 225 aa12.87□□□□□ -0.35
LIMS3-201ENST00000437679 ST7LQ8TDW4 575 aa12.87□□□□□ -0.35
LIMS3-201ENST00000437679 ITLN1Q8WWA0 313 aa12.87□□□□□ -0.35
LIMS3-201ENST00000437679 ZMYND19Q96E35 227 aaPredicted RBP12.87□□□□□ -0.35
LIMS3-201ENST00000437679 OR2V2Q96R30 315 aa12.87□□□□□ -0.35
LIMS3-201ENST00000437679 MARCH7Q9H992 704 aa12.87□□□□□ -0.35
LIMS3-201ENST00000437679 KRT84Q9NSB2 600 aa12.87□□□□□ -0.35
LIMS3-201ENST00000437679 TMEM100Q9NV29 134 aa12.87□□□□□ -0.35
LIMS3-201ENST00000437679 TVP23BQ9NYZ1 205 aa12.87□□□□□ -0.35
LIMS3-201ENST00000437679 HSD11B1P28845 292 aa12.86□□□□□ -0.35
LIMS3-201ENST00000437679 SRP9P49458 86 aaKnown RBP12.86□□□□□ -0.35
LIMS3-201ENST00000437679 RPS7P62081 194 aaKnown RBP12.86□□□□□ -0.35
LIMS3-201ENST00000437679 ESRRGP62508 458 aa12.86□□□□□ -0.35
LIMS3-201ENST00000437679 SNAI3Q3KNW1 292 aa12.86□□□□□ -0.35
LIMS3-201ENST00000437679 SLC35D3Q5M8T2 416 aa12.86□□□□□ -0.35
LIMS3-201ENST00000437679 CXXC5Q7LFL8 322 aaKnown RBP12.86□□□□□ -0.35
LIMS3-201ENST00000437679 AMIGO2Q86SJ2 522 aa12.86□□□□□ -0.35
LIMS3-201ENST00000437679 TIGD4Q8IY51 512 aa12.86□□□□□ -0.35
LIMS3-201ENST00000437679 ZNF283Q8N7M2 679 aa12.86□□□□□ -0.35
LIMS3-201ENST00000437679 OR10AD1Q8NGE0 317 aa12.86□□□□□ -0.35
LIMS3-201ENST00000437679 SPRYD4Q8WW59 207 aaPredicted RBP12.86□□□□□ -0.35
LIMS3-201ENST00000437679 LRTOMTQ8WZ04 291 aa12.86□□□□□ -0.35
LIMS3-201ENST00000437679 RAB39BQ96DA2 213 aa12.86□□□□□ -0.35
LIMS3-201ENST00000437679 SLC30A2Q9BRI3 323 aa12.86□□□□□ -0.35
LIMS3-201ENST00000437679 ABHD6Q9BV23 337 aa12.86□□□□□ -0.35
LIMS3-201ENST00000437679 PRRG3Q9BZD7 231 aa12.86□□□□□ -0.35
LIMS3-201ENST00000437679 TOR3AQ9H497 397 aa12.86□□□□□ -0.35
LIMS3-201ENST00000437679 N6AMT1Q9Y5N5 214 aa12.86□□□□□ -0.35
LIMS3-201ENST00000437679 ISPDA4D126 451 aa12.85□□□□□ -0.35
LIMS3-201ENST00000437679 IFNA2P01563 188 aa12.85□□□□□ -0.35
LIMS3-201ENST00000437679 APOC1P02654 83 aa12.85□□□□□ -0.35
LIMS3-201ENST00000437679 FAM157CP0CG43 387 aa12.85□□□□□ -0.35
LIMS3-201ENST00000437679 ANPEPP15144 967 aa12.85□□□□□ -0.35
LIMS3-201ENST00000437679 PCMT1P22061 227 aa12.85□□□□□ -0.35
LIMS3-201ENST00000437679 DVL1P1P54792 670 aaPredicted RBP12.85□□□□□ -0.35
LIMS3-201ENST00000437679 PRSS12P56730 875 aa12.85□□□□□ -0.35
LIMS3-201ENST00000437679 LMO4P61968 165 aa12.85□□□□□ -0.35
LIMS3-201ENST00000437679 PTGES3Q15185 160 aaKnown RBP12.85□□□□□ -0.35
LIMS3-201ENST00000437679 FAM120AOSQ5T036 256 aa12.85□□□□□ -0.35
LIMS3-201ENST00000437679 GLCCI1Q86VQ1 547 aa12.85□□□□□ -0.35
LIMS3-201ENST00000437679 ZNF454Q8N9F8 522 aa12.85□□□□□ -0.35
LIMS3-201ENST00000437679 OR51F2Q8NH61 342 aa12.85□□□□□ -0.35
LIMS3-201ENST00000437679 RNF133Q8WVZ7 376 aa12.85□□□□□ -0.35
LIMS3-201ENST00000437679 GAL3ST1Q99999 423 aa12.85□□□□□ -0.35
LIMS3-201ENST00000437679 GABARAPL1Q9H0R8 117 aa12.85□□□□□ -0.35
LIMS3-201ENST00000437679 ZNF665Q9H7R5 613 aa12.85□□□□□ -0.35
LIMS3-201ENST00000437679 SP140LQ9H930 580 aa12.85□□□□□ -0.35
LIMS3-201ENST00000437679 TMEM106BQ9NUM4 274 aa12.85□□□□□ -0.35
LIMS3-201ENST00000437679 ENOPH1Q9UHY7 261 aa12.85□□□□□ -0.35
LIMS3-201ENST00000437679 PPP1R3CQ9UQK1 317 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms