RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 DPF1Q92782 380 aa12.45□□□□□ -0.42
COL4A1-201ENST00000375820 ZDHHC16Q969W1 377 aa12.45□□□□□ -0.42
COL4A1-201ENST00000375820 CCDC74BQ96LY2 380 aa12.45□□□□□ -0.42
COL4A1-201ENST00000375820 ZDHHC5Q9C0B5 715 aa12.45□□□□□ -0.42
COL4A1-201ENST00000375820 DCAF16Q9NXF7 216 aa12.45□□□□□ -0.42
COL4A1-201ENST00000375820 SPINK4O60575 86 aa12.45□□□□□ -0.42
COL4A1-201ENST00000375820 ADH4P08319 380 aa12.45□□□□□ -0.42
COL4A1-201ENST00000375820 BMP5P22003 454 aa12.45□□□□□ -0.42
COL4A1-201ENST00000375820 FAM122BQ7Z309 247 aa12.45□□□□□ -0.42
COL4A1-201ENST00000375820 CMTM4Q8IZR5 234 aa12.45□□□□□ -0.42
COL4A1-201ENST00000375820 OR2L13Q8N349 312 aa12.45□□□□□ -0.42
COL4A1-201ENST00000375820 MFSD4AQ8N468 514 aa12.45□□□□□ -0.42
COL4A1-201ENST00000375820 DEFB123Q8N688 67 aa12.45□□□□□ -0.42
COL4A1-201ENST00000375820 NPAP1Q9NZP6 1156 aa12.45□□□□□ -0.42
COL4A1-201ENST00000375820 RGPD2P0DJD1 1756 aa12.45□□□□□ -0.42
COL4A1-201ENST00000375820 LINC01565O15544 149 aa12.45□□□□□ -0.42
COL4A1-201ENST00000375820 ONECUT2O95948 504 aa12.45□□□□□ -0.42
COL4A1-201ENST00000375820 SLC25A4P12235 298 aa12.45□□□□□ -0.42
COL4A1-201ENST00000375820 KRTDAPP60985 99 aa12.45□□□□□ -0.42
COL4A1-201ENST00000375820 SPINK9Q5DT21 86 aa12.45□□□□□ -0.42
COL4A1-201ENST00000375820 MOB3BQ86TA1 216 aa12.45□□□□□ -0.42
COL4A1-201ENST00000375820 S1PR3Q99500 378 aa12.45□□□□□ -0.42
COL4A1-201ENST00000375820 FAM117AQ9C073 453 aa12.45□□□□□ -0.42
COL4A1-201ENST00000375820 SLC25A32Q9H2D1 315 aa12.45□□□□□ -0.42
COL4A1-201ENST00000375820 TIMM9Q9Y5J7 89 aa12.45□□□□□ -0.42
COL4A1-201ENST00000375820 DEFB108AA8MXU0 73 aa12.45□□□□□ -0.42
COL4A1-201ENST00000375820 H3BMH7 237 aa12.45□□□□□ -0.42
COL4A1-201ENST00000375820 GPX5O75715 221 aa12.45□□□□□ -0.42
COL4A1-201ENST00000375820 AQP8O94778 261 aa12.45□□□□□ -0.42
COL4A1-201ENST00000375820 SDHAP31040 664 aa12.45□□□□□ -0.42
COL4A1-201ENST00000375820 GUCA2AQ02747 115 aa12.45□□□□□ -0.42
COL4A1-201ENST00000375820 DLEU7Q6UYE1 221 aa12.45□□□□□ -0.42
COL4A1-201ENST00000375820 OR2AK2Q8NG84 335 aa12.45□□□□□ -0.42
COL4A1-201ENST00000375820 SLC39A7Q92504 469 aa12.45□□□□□ -0.42
COL4A1-201ENST00000375820 LURAP1Q96LR2 239 aa12.45□□□□□ -0.42
COL4A1-201ENST00000375820 LHFPL2Q6ZUX7 228 aa12.44□□□□□ -0.42
COL4A1-201ENST00000375820 OR10P1Q8NGE3 313 aa12.44□□□□□ -0.42
COL4A1-201ENST00000375820 VPS25Q9BRG1 176 aa12.44□□□□□ -0.42
COL4A1-201ENST00000375820 PBOV1Q9GZY1 135 aa12.44□□□□□ -0.42
COL4A1-201ENST00000375820 LOXL2Q9Y4K0 774 aa12.44□□□□□ -0.42
COL4A1-201ENST00000375820 H7BYZ3 331 aa12.44□□□□□ -0.42
COL4A1-201ENST00000375820 B3GALNT1O75752 331 aa12.44□□□□□ -0.42
COL4A1-201ENST00000375820 FGF7P21781 194 aa12.44□□□□□ -0.42
COL4A1-201ENST00000375820 RFX2P48378 723 aa12.44□□□□□ -0.42
COL4A1-201ENST00000375820 H3F3AP84243 136 aa12.44□□□□□ -0.42
COL4A1-201ENST00000375820 IL10RAQ13651 578 aa12.44□□□□□ -0.42
COL4A1-201ENST00000375820 ZNF787Q6DD87 383 aa12.44□□□□□ -0.42
COL4A1-201ENST00000375820 SIGLECL1Q8N7X8 197 aa12.44□□□□□ -0.42
COL4A1-201ENST00000375820 LYRM4Q9HD34 91 aa12.44□□□□□ -0.42
COL4A1-201ENST00000375820 UBE2L5PA0A1B0GUS4 154 aa12.44□□□□□ -0.42
COL4A1-201ENST00000375820 GPANK1O95872 356 aa12.44□□□□□ -0.42
COL4A1-201ENST00000375820 CD3DP04234 171 aa12.44□□□□□ -0.42
COL4A1-201ENST00000375820 CPN1P15169 458 aa12.44□□□□□ -0.42
COL4A1-201ENST00000375820 B3GNT9Q6UX72 402 aa12.44□□□□□ -0.42
COL4A1-201ENST00000375820 ST8SIA4Q92187 359 aa12.44□□□□□ -0.42
COL4A1-201ENST00000375820 ERGIC1Q969X5 290 aa12.44□□□□□ -0.42
COL4A1-201ENST00000375820 FBXO17Q96EF6 278 aa12.44□□□□□ -0.42
COL4A1-201ENST00000375820 MED19A0JLT2 244 aaPredicted RBP12.44□□□□□ -0.42
COL4A1-201ENST00000375820 G3V3Q6 166 aa12.44□□□□□ -0.42
COL4A1-201ENST00000375820 SELEP16581 610 aa12.44□□□□□ -0.42
COL4A1-201ENST00000375820 FABP9Q0Z7S8 132 aa12.44□□□□□ -0.42
COL4A1-201ENST00000375820 SLC25A26Q70HW3 274 aa12.44□□□□□ -0.42
COL4A1-201ENST00000375820 RTN4RL1Q86UN2 441 aaPredicted RBP12.44□□□□□ -0.42
COL4A1-201ENST00000375820 C16orf52Q8NHV5 167 aa12.44□□□□□ -0.42
COL4A1-201ENST00000375820 RBM14Q96PK6 669 aaKnown RBP12.44□□□□□ -0.42
COL4A1-201ENST00000375820 CTDSP1Q9GZU7 261 aa12.44□□□□□ -0.42
COL4A1-201ENST00000375820 HS3ST3A1Q9Y663 406 aa12.44□□□□□ -0.42
COL4A1-201ENST00000375820 KIR2DS1A0A191URI9 304 aa12.44□□□□□ -0.42
COL4A1-201ENST00000375820 ECI1P42126 302 aa12.44□□□□□ -0.42
COL4A1-201ENST00000375820 KIR2DS4P43632 304 aa12.44□□□□□ -0.42
COL4A1-201ENST00000375820 CDC34P49427 236 aaPredicted RBP12.44□□□□□ -0.42
COL4A1-201ENST00000375820 GP2P55259 537 aaKnown RBP12.44□□□□□ -0.42
COL4A1-201ENST00000375820 PIGPP57054 158 aa12.44□□□□□ -0.42
COL4A1-201ENST00000375820 KIR2DS1Q14954 304 aa12.44□□□□□ -0.42
COL4A1-201ENST00000375820 RPUSD3Q6P087 351 aaKnown RBP12.44□□□□□ -0.42
COL4A1-201ENST00000375820 CADM3Q8N126 398 aa12.44□□□□□ -0.42
COL4A1-201ENST00000375820 SLC25A21Q9BQT8 299 aaPredicted RBP12.44□□□□□ -0.42
COL4A1-201ENST00000375820 COMMD5Q9GZQ3 224 aa12.44□□□□□ -0.42
COL4A1-201ENST00000375820 PLA2G3Q9NZ20 509 aa12.44□□□□□ -0.42
COL4A1-201ENST00000375820 COX7A2P2O60397 106 aa12.43□□□□□ -0.42
COL4A1-201ENST00000375820 IGHV3-13P01766 116 aa12.43□□□□□ -0.42
COL4A1-201ENST00000375820 IGHV3-7P01780 117 aa12.43□□□□□ -0.42
COL4A1-201ENST00000375820 ARNTP27540 789 aa12.43□□□□□ -0.42
COL4A1-201ENST00000375820 CA13Q8N1Q1 262 aa12.43□□□□□ -0.42
COL4A1-201ENST00000375820 ANKLE1Q8NAG6 615 aa12.43□□□□□ -0.42
COL4A1-201ENST00000375820 GLB1P16278 677 aa12.43□□□□□ -0.42
COL4A1-201ENST00000375820 ZNF121P58317 390 aaPredicted RBP12.43□□□□□ -0.42
COL4A1-201ENST00000375820 SNRPGP62308 76 aaKnown RBP12.43□□□□□ -0.42
COL4A1-201ENST00000375820 TAGLNQ01995 201 aaKnown RBP12.43□□□□□ -0.42
COL4A1-201ENST00000375820 AGBL4Q5VU57 503 aa12.43□□□□□ -0.42
COL4A1-201ENST00000375820 TSEN54Q7Z6J9 526 aaKnown RBP12.43□□□□□ -0.42
COL4A1-201ENST00000375820 ADGRG3Q86Y34 549 aa12.43□□□□□ -0.42
COL4A1-201ENST00000375820 ASB16Q96NS5 453 aa12.43□□□□□ -0.42
COL4A1-201ENST00000375820 SH2D7A6NKC9 451 aaPredicted RBP12.43□□□□□ -0.42
COL4A1-201ENST00000375820 TO15178 435 aa12.43□□□□□ -0.42
COL4A1-201ENST00000375820 AKR7A2O43488 359 aa12.43□□□□□ -0.42
COL4A1-201ENST00000375820 NID1P14543 1247 aa12.43□□□□□ -0.42
COL4A1-201ENST00000375820 FABP5Q01469 135 aa12.43□□□□□ -0.42
COL4A1-201ENST00000375820 ALKBH3Q96Q83 286 aaPredicted RBP12.43□□□□□ -0.42
COL4A1-201ENST00000375820 SLCO1C1Q9NYB5 712 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms