RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 POLDIP2Q9Y2S7 368 aa10.36□□□□□ -0.75
PTPRF-203ENST00000372407 TMEM265A0A087WTH1 108 aa10.36□□□□□ -0.75
PTPRF-203ENST00000372407 IMPA2O14732 288 aa10.36□□□□□ -0.75
PTPRF-203ENST00000372407 CT45A6P0DMU7 189 aa10.36□□□□□ -0.75
PTPRF-203ENST00000372407 CT45A5P0DMU8 189 aa10.36□□□□□ -0.75
PTPRF-203ENST00000372407 CT45A7P0DMV0 189 aa10.36□□□□□ -0.75
PTPRF-203ENST00000372407 CT45A8P0DMV1 189 aa10.36□□□□□ -0.75
PTPRF-203ENST00000372407 CT45A9P0DMV2 189 aa10.36□□□□□ -0.75
PTPRF-203ENST00000372407 SSBP1Q04837 148 aaKnown RBP10.36□□□□□ -0.75
PTPRF-203ENST00000372407 CT45A2Q5DJT8 189 aa10.36□□□□□ -0.75
PTPRF-203ENST00000372407 CT45A1Q5HYN5 189 aa10.36□□□□□ -0.75
PTPRF-203ENST00000372407 AGBL4Q5VU57 503 aa10.36□□□□□ -0.75
PTPRF-203ENST00000372407 Q7L0L9 218 aa10.36□□□□□ -0.75
PTPRF-203ENST00000372407 TCTE3Q8IZS6 198 aa10.36□□□□□ -0.75
PTPRF-203ENST00000372407 CT45A3Q8NHU0 189 aa10.36□□□□□ -0.75
PTPRF-203ENST00000372407 UCN3Q969E3 161 aa10.36□□□□□ -0.75
PTPRF-203ENST00000372407 PLA2G12AQ9BZM1 189 aa10.36□□□□□ -0.75
PTPRF-203ENST00000372407 TRAPPC4Q9Y296 219 aa10.36□□□□□ -0.75
PTPRF-203ENST00000372407 IGLV3-16A0A075B6K0 115 aa10.36□□□□□ -0.75
PTPRF-203ENST00000372407 PPP5D1E7EU14 171 aa10.36□□□□□ -0.75
PTPRF-203ENST00000372407 HSD17B6O14756 317 aa10.36□□□□□ -0.75
PTPRF-203ENST00000372407 ENSAO43768 121 aaKnown RBP10.36□□□□□ -0.75
PTPRF-203ENST00000372407 OR5H8P0DN80 308 aa10.36□□□□□ -0.75
PTPRF-203ENST00000372407 PI3P19957 117 aa10.36□□□□□ -0.75
PTPRF-203ENST00000372407 RPL12P30050 165 aaKnown RBP10.36□□□□□ -0.75
PTPRF-203ENST00000372407 HOXC8P31273 242 aa10.36□□□□□ -0.75
PTPRF-203ENST00000372407 MMP15P51511 669 aa10.36□□□□□ -0.75
PTPRF-203ENST00000372407 SNRPNP63162 240 aaKnown RBP10.36□□□□□ -0.75
PTPRF-203ENST00000372407 ZNF85Q03923 595 aa10.36□□□□□ -0.75
PTPRF-203ENST00000372407 SHBQ15464 509 aa10.36□□□□□ -0.75
PTPRF-203ENST00000372407 XAF1Q6GPH4 301 aa10.36□□□□□ -0.75
PTPRF-203ENST00000372407 HIST2H3AQ71DI3 136 aa10.36□□□□□ -0.75
PTPRF-203ENST00000372407 GALNT16Q8N428 558 aa10.36□□□□□ -0.75
PTPRF-203ENST00000372407 OR2AE1Q8NHA4 323 aa10.36□□□□□ -0.75
PTPRF-203ENST00000372407 KLK11Q9UBX7 282 aa10.36□□□□□ -0.75
PTPRF-203ENST00000372407 RPH3ALQ9UNE2 315 aa10.36□□□□□ -0.75
PTPRF-203ENST00000372407 GAB2Q9UQC2 676 aa10.36□□□□□ -0.75
PTPRF-203ENST00000372407 AHCTF1Q8WYP5 2266 aa10.36□□□□□ -0.75
PTPRF-203ENST00000372407 A0A0A6YYD5 115 aa10.35□□□□□ -0.75
PTPRF-203ENST00000372407 SLC17A2O00624 439 aa10.35□□□□□ -0.75
PTPRF-203ENST00000372407 XRCC3O43542 346 aa10.35□□□□□ -0.75
PTPRF-203ENST00000372407 WDR1O75083 606 aa10.35□□□□□ -0.75
PTPRF-203ENST00000372407 RNF4P78317 190 aa10.35□□□□□ -0.75
PTPRF-203ENST00000372407 H2BFWTQ7Z2G1 175 aa10.35□□□□□ -0.75
PTPRF-203ENST00000372407 NAA40Q86UY6 237 aa10.35□□□□□ -0.75
PTPRF-203ENST00000372407 SLC35G3Q8N808 338 aa10.35□□□□□ -0.75
PTPRF-203ENST00000372407 RELL2Q8NC24 303 aaPredicted RBP10.35□□□□□ -0.75
PTPRF-203ENST00000372407 MARCH1Q8TCQ1 289 aa10.35□□□□□ -0.75
PTPRF-203ENST00000372407 MITD1Q8WV92 249 aa10.35□□□□□ -0.75
PTPRF-203ENST00000372407 ASB13Q8WXK3 278 aa10.35□□□□□ -0.75
PTPRF-203ENST00000372407 MRGPRX4Q96LA9 322 aa10.35□□□□□ -0.75
PTPRF-203ENST00000372407 CDX2Q99626 313 aaPredicted RBP10.35□□□□□ -0.75
PTPRF-203ENST00000372407 RTL8AQ9BWD3 113 aa10.35□□□□□ -0.75
PTPRF-203ENST00000372407 B9D1Q9UPM9 204 aa10.35□□□□□ -0.75
PTPRF-203ENST00000372407 SSUH2Q9Y2M2 353 aa10.35□□□□□ -0.75
PTPRF-203ENST00000372407 MGMTP16455 207 aa10.35□□□□□ -0.75
PTPRF-203ENST00000372407 PTAFRP25105 342 aa10.35□□□□□ -0.75
PTPRF-203ENST00000372407 CCR2P41597 374 aa10.35□□□□□ -0.75
PTPRF-203ENST00000372407 NPBWR1P48145 328 aa10.35□□□□□ -0.75
PTPRF-203ENST00000372407 SLC25A35Q3KQZ1 300 aa10.35□□□□□ -0.75
PTPRF-203ENST00000372407 Q6ZRG5 221 aa10.35□□□□□ -0.75
PTPRF-203ENST00000372407 TMPRSS11FQ6ZWK6 438 aa10.35□□□□□ -0.75
PTPRF-203ENST00000372407 NLRC3Q7RTR2 1065 aa10.35□□□□□ -0.75
PTPRF-203ENST00000372407 EXD3Q8N9H8 876 aa10.35□□□□□ -0.75
PTPRF-203ENST00000372407 OR4C16Q8NGL9 310 aa10.35□□□□□ -0.75
PTPRF-203ENST00000372407 CCDC74AQ96AQ1 378 aa10.35□□□□□ -0.75
PTPRF-203ENST00000372407 OXGR1Q96P68 337 aa10.35□□□□□ -0.75
PTPRF-203ENST00000372407 C20orf24Q9BUV8 137 aa10.35□□□□□ -0.75
PTPRF-203ENST00000372407 PLAC1Q9HBJ0 212 aa10.35□□□□□ -0.75
PTPRF-203ENST00000372407 NIT2Q9NQR4 276 aa10.35□□□□□ -0.75
PTPRF-203ENST00000372407 HIF1ANQ9NWT6 349 aa10.35□□□□□ -0.75
PTPRF-203ENST00000372407 ING1Q9UK53 422 aaPredicted RBP10.35□□□□□ -0.75
PTPRF-203ENST00000372407 hCG_1809904A0A1W2PP81 198 aa10.35□□□□□ -0.75
PTPRF-203ENST00000372407 A0A1W2PPE2 198 aa10.35□□□□□ -0.75
PTPRF-203ENST00000372407 A0A1W2PR64 198 aa10.35□□□□□ -0.75
PTPRF-203ENST00000372407 A0A1W2PRV1 198 aa10.35□□□□□ -0.75
PTPRF-203ENST00000372407 E5RGE8 158 aa10.35□□□□□ -0.75
PTPRF-203ENST00000372407 TRIM77I1YAP6 450 aa10.35□□□□□ -0.75
PTPRF-203ENST00000372407 TBX19O60806 448 aa10.35□□□□□ -0.75
PTPRF-203ENST00000372407 TMEM196Q5HYL7 178 aa10.35□□□□□ -0.75
PTPRF-203ENST00000372407 C17orf107Q6ZR85 190 aa10.35□□□□□ -0.75
PTPRF-203ENST00000372407 C11orf40Q8WZ69 217 aa10.35□□□□□ -0.75
PTPRF-203ENST00000372407 OR2A14Q96R47 310 aa10.35□□□□□ -0.75
PTPRF-203ENST00000372407 SLC17A4Q9Y2C5 497 aa10.35□□□□□ -0.75
PTPRF-203ENST00000372407 NSG2Q9Y328 171 aa10.35□□□□□ -0.75
PTPRF-203ENST00000372407 A0A1W2PPC4 97 aa10.35□□□□□ -0.75
PTPRF-203ENST00000372407 TUBAL3A6NHL2 446 aa10.35□□□□□ -0.75
PTPRF-203ENST00000372407 ZNF891A8MT65 544 aaPredicted RBP10.35□□□□□ -0.75
PTPRF-203ENST00000372407 LINC01565O15544 149 aa10.35□□□□□ -0.75
PTPRF-203ENST00000372407 PRKNO60260 465 aaPredicted RBP10.35□□□□□ -0.75
PTPRF-203ENST00000372407 NRASP01111 189 aa10.35□□□□□ -0.75
PTPRF-203ENST00000372407 TPOP07202 933 aa10.35□□□□□ -0.75
PTPRF-203ENST00000372407 CD37P11049 281 aa10.35□□□□□ -0.75
PTPRF-203ENST00000372407 HRH1P35367 487 aa10.35□□□□□ -0.75
PTPRF-203ENST00000372407 FLI1Q01543 452 aaPredicted RBP10.35□□□□□ -0.75
PTPRF-203ENST00000372407 ZNF239Q16600 458 aaKnown RBP10.35□□□□□ -0.75
PTPRF-203ENST00000372407 AARDQ4LEZ3 155 aa10.35□□□□□ -0.75
PTPRF-203ENST00000372407 TMEM182Q6ZP80 229 aaPredicted RBP10.35□□□□□ -0.75
PTPRF-203ENST00000372407 RNF165Q6ZSG1 346 aa10.35□□□□□ -0.75
PTPRF-203ENST00000372407 TMPRSS7Q7RTY8 843 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms