RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 GNALP38405 381 aa8.02□□□□□ -1.13
USP4-202ENST00000351842 LIPAP38571 399 aa8.02□□□□□ -1.13
USP4-202ENST00000351842 GDI2P50395 445 aaKnown RBP8.02□□□□□ -1.13
USP4-202ENST00000351842 NANOS3P60323 173 aaKnown RBP8.02□□□□□ -1.13
USP4-202ENST00000351842 GALNT11Q8NCW6 608 aa8.02□□□□□ -1.13
USP4-202ENST00000351842 OR51E1Q8TCB6 317 aa8.02□□□□□ -1.13
USP4-202ENST00000351842 ZNF799Q96GE5 643 aa8.02□□□□□ -1.13
USP4-202ENST00000351842 FUNDC2Q9BWH2 189 aa8.02□□□□□ -1.13
USP4-202ENST00000351842 MND1Q9BWT6 205 aa8.02□□□□□ -1.13
USP4-202ENST00000351842 ZNF224Q9NZL3 707 aa8.02□□□□□ -1.13
USP4-202ENST00000351842 ZNF629Q9UEG4 869 aaPredicted RBP8.02□□□□□ -1.13
USP4-202ENST00000351842 DIMT1Q9UNQ2 313 aaKnown RBP8.02□□□□□ -1.13
USP4-202ENST00000351842 TIMM10BQ9Y5J6 103 aa8.02□□□□□ -1.13
USP4-202ENST00000351842 LOC100509620A0A075B734 347 aa8.01□□□□□ -1.13
USP4-202ENST00000351842 ATP6V1G2-DDX39BF2Z307 99 aa8.01□□□□□ -1.13
USP4-202ENST00000351842 C19orf84I3L1E1 186 aa8.01□□□□□ -1.13
USP4-202ENST00000351842 LMX1BO60663 402 aa8.01□□□□□ -1.13
USP4-202ENST00000351842 WNT4P56705 351 aa8.01□□□□□ -1.13
USP4-202ENST00000351842 HGFACQ04756 655 aa8.01□□□□□ -1.13
USP4-202ENST00000351842 SCRN3Q0VDG4 424 aa8.01□□□□□ -1.13
USP4-202ENST00000351842 PPA1Q15181 289 aa8.01□□□□□ -1.13
USP4-202ENST00000351842 SNAI3Q3KNW1 292 aa8.01□□□□□ -1.13
USP4-202ENST00000351842 SLC35D3Q5M8T2 416 aa8.01□□□□□ -1.13
USP4-202ENST00000351842 FAM27BQ5VT28 67 aa8.01□□□□□ -1.13
USP4-202ENST00000351842 CDC20BQ86Y33 519 aa8.01□□□□□ -1.13
USP4-202ENST00000351842 MINDY2Q8NBR6 621 aa8.01□□□□□ -1.13
USP4-202ENST00000351842 SLC30A7Q8NEW0 376 aa8.01□□□□□ -1.13
USP4-202ENST00000351842 ST7LQ8TDW4 575 aa8.01□□□□□ -1.13
USP4-202ENST00000351842 SPACA5Q96QH8 159 aa8.01□□□□□ -1.13
USP4-202ENST00000351842 DCUN1D5Q9BTE7 237 aa8.01□□□□□ -1.13
USP4-202ENST00000351842 WNT5BQ9H1J7 359 aa8.01□□□□□ -1.13
USP4-202ENST00000351842 CDH20Q9HBT6 801 aa8.01□□□□□ -1.13
USP4-202ENST00000351842 BAHCC1Q9P281 2608 aa8.01□□□□□ -1.13
USP4-202ENST00000351842 ZNF878C9JN71 531 aa8.01□□□□□ -1.13
USP4-202ENST00000351842 ABCD4O14678 606 aa8.01□□□□□ -1.13
USP4-202ENST00000351842 MTRF1O75570 445 aaKnown RBP8.01□□□□□ -1.13
USP4-202ENST00000351842 CD36P16671 472 aa8.01□□□□□ -1.13
USP4-202ENST00000351842 ZNF182P17025 639 aaPredicted RBP8.01□□□□□ -1.13
USP4-202ENST00000351842 NPR2P20594 1047 aa8.01□□□□□ -1.13
USP4-202ENST00000351842 UGT2B10P36537 528 aa8.01□□□□□ -1.13
USP4-202ENST00000351842 GBX2P52951 348 aaPredicted RBP8.01□□□□□ -1.13
USP4-202ENST00000351842 GALEQ14376 348 aa8.01□□□□□ -1.13
USP4-202ENST00000351842 ELFN2Q5R3F8 820 aa8.01□□□□□ -1.13
USP4-202ENST00000351842 C10orf128Q5T292 105 aa8.01□□□□□ -1.13
USP4-202ENST00000351842 RIPPLY2Q5TAB7 128 aa8.01□□□□□ -1.13
USP4-202ENST00000351842 VASH1Q7L8A9 365 aaPredicted RBP8.01□□□□□ -1.13
USP4-202ENST00000351842 SVOPQ8N4V2 548 aa8.01□□□□□ -1.13
USP4-202ENST00000351842 OR1F12Q8NHA8 337 aa8.01□□□□□ -1.13
USP4-202ENST00000351842 BCL2L2Q92843 193 aaPredicted RBP8.01□□□□□ -1.13
USP4-202ENST00000351842 GHSRQ92847 366 aa8.01□□□□□ -1.13
USP4-202ENST00000351842 NEUROG1Q92886 237 aa8.01□□□□□ -1.13
USP4-202ENST00000351842 DCLRE1CQ96SD1 692 aaKnown RBP8.01□□□□□ -1.13
USP4-202ENST00000351842 OR51E2Q9H255 320 aa8.01□□□□□ -1.13
USP4-202ENST00000351842 FANCFQ9NPI8 374 aa8.01□□□□□ -1.13
USP4-202ENST00000351842 MYEF2Q9P2K5 600 aaKnown RBP8.01□□□□□ -1.13
USP4-202ENST00000351842 TMEM14AQ9Y6G1 99 aa8.01□□□□□ -1.13
USP4-202ENST00000351842 A0A1B0GUH1 482 aa8.01□□□□□ -1.13
USP4-202ENST00000351842 OR5H1A6NKK0 313 aa8.01□□□□□ -1.13
USP4-202ENST00000351842 CENPBD1B2RD01 187 aa8.01□□□□□ -1.13
USP4-202ENST00000351842 PRSS44E7EML9 344 aa8.01□□□□□ -1.13
USP4-202ENST00000351842 SLC22A1O15245 554 aa8.01□□□□□ -1.13
USP4-202ENST00000351842 EPXP11678 715 aa8.01□□□□□ -1.13
USP4-202ENST00000351842 RPS25P62851 125 aaKnown RBP8.01□□□□□ -1.13
USP4-202ENST00000351842 ACTC1P68032 377 aa8.01□□□□□ -1.13
USP4-202ENST00000351842 ACTA1P68133 377 aa8.01□□□□□ -1.13
USP4-202ENST00000351842 POU4F2Q12837 409 aa8.01□□□□□ -1.13
USP4-202ENST00000351842 ZCCHC24Q8N2G6 241 aaKnown RBP8.01□□□□□ -1.13
USP4-202ENST00000351842 ACBD4Q8NC06 268 aa8.01□□□□□ -1.13
USP4-202ENST00000351842 TRIM36Q9NQ86 728 aa8.01□□□□□ -1.13
USP4-202ENST00000351842 FKBP14Q9NWM8 211 aa8.01□□□□□ -1.13
USP4-202ENST00000351842 PTTG3PQ9NZH4 202 aa8.01□□□□□ -1.13
USP4-202ENST00000351842 NPAP1Q9NZP6 1156 aa8.01□□□□□ -1.13
USP4-202ENST00000351842 ZNF319Q9P2F9 582 aa8.01□□□□□ -1.13
USP4-202ENST00000351842 EXOSC1Q9Y3B2 195 aaKnown RBP8.01□□□□□ -1.13
USP4-202ENST00000351842 SONP18583 2426 aaKnown RBP8□□□□□ -1.13
USP4-202ENST00000351842 METTL15A6NJ78 407 aa8□□□□□ -1.13
USP4-202ENST00000351842 NPIPB13A6NJU9 1138 aa8□□□□□ -1.13
USP4-202ENST00000351842 OR6C65A6NJZ3 312 aa8□□□□□ -1.13
USP4-202ENST00000351842 NPIPB4C9JG80 1138 aa8□□□□□ -1.13
USP4-202ENST00000351842 C3orf80F5H4A9 247 aa8□□□□□ -1.13
USP4-202ENST00000351842 CASKO14936 926 aa8□□□□□ -1.13
USP4-202ENST00000351842 NOL3O60936 208 aaKnown RBP8□□□□□ -1.13
USP4-202ENST00000351842 CECR9P0C854 216 aa8□□□□□ -1.13
USP4-202ENST00000351842 SELEP16581 610 aa8□□□□□ -1.13
USP4-202ENST00000351842 SPCS2Q15005 226 aa8□□□□□ -1.13
USP4-202ENST00000351842 OXA1LQ15070 435 aa8□□□□□ -1.13
USP4-202ENST00000351842 WDR38Q5JTN6 314 aa8□□□□□ -1.13
USP4-202ENST00000351842 ZNF679Q8IYX0 411 aa8□□□□□ -1.13
USP4-202ENST00000351842 WBP1Q96G27 269 aa8□□□□□ -1.13
USP4-202ENST00000351842 OR8B4Q96RC9 309 aa8□□□□□ -1.13
USP4-202ENST00000351842 PPP1R3EQ9H7J1 279 aa8□□□□□ -1.13
USP4-202ENST00000351842 PLCXD1Q9NUJ7 323 aa8□□□□□ -1.13
USP4-202ENST00000351842 BABAM2Q9NXR7 383 aa8□□□□□ -1.13
USP4-202ENST00000351842 CNOT2Q9NZN8 540 aaKnown RBP8□□□□□ -1.13
USP4-202ENST00000351842 ZMAT5Q9UDW3 170 aaKnown RBP8□□□□□ -1.13
USP4-202ENST00000351842 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8□□□□□ -1.135e-7■■■■■ 32.3
USP4-202ENST00000351842 FUOMA2VDF0 154 aa8□□□□□ -1.13
USP4-202ENST00000351842 GPRIN2O60269 458 aa8□□□□□ -1.13
USP4-202ENST00000351842 ZFPL1O95159 310 aa8□□□□□ -1.13
USP4-202ENST00000351842 HOXD4P09016 255 aaPredicted RBP8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms