RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 RRAS2P62070 204 aaPredicted RBP7.46□□□□□ -1.21
HMGB1-203ENST00000341423 SDR9C7Q8NEX9 313 aa7.46□□□□□ -1.21
HMGB1-203ENST00000341423 CASTOR1Q8WTX7 329 aa7.46□□□□□ -1.21
HMGB1-203ENST00000341423 ABHD3Q8WU67 409 aa7.46□□□□□ -1.21
HMGB1-203ENST00000341423 ACOT11Q8WXI4 607 aaPredicted RBP7.46□□□□□ -1.21
HMGB1-203ENST00000341423 KIRREL1Q96J84 757 aa7.46□□□□□ -1.21
HMGB1-203ENST00000341423 TSC22D3Q99576 134 aa7.46□□□□□ -1.21
HMGB1-203ENST00000341423 MECRQ9BV79 373 aa7.46□□□□□ -1.21
HMGB1-203ENST00000341423 PRORYQ9H606 182 aa7.46□□□□□ -1.21
HMGB1-203ENST00000341423 ADAMTS6Q9UKP5 1117 aa7.46□□□□□ -1.21
HMGB1-203ENST00000341423 BOLA1Q9Y3E2 137 aa7.46□□□□□ -1.21
HMGB1-203ENST00000341423 TRIP12Q14669 1992 aaPredicted RBP7.46□□□□□ -1.21
HMGB1-203ENST00000341423 KIR2DS1A0A191URI9 304 aa7.46□□□□□ -1.21
HMGB1-203ENST00000341423 ZNF593O00488 134 aaPredicted RBP7.46□□□□□ -1.21
HMGB1-203ENST00000341423 FKBP6O75344 327 aa7.46□□□□□ -1.21
HMGB1-203ENST00000341423 SAP30O75446 220 aa7.46□□□□□ -1.21
HMGB1-203ENST00000341423 LAP3P28838 519 aa7.46□□□□□ -1.21
HMGB1-203ENST00000341423 KIR2DS4P43632 304 aa7.46□□□□□ -1.21
HMGB1-203ENST00000341423 GNG10P50151 68 aa7.46□□□□□ -1.21
HMGB1-203ENST00000341423 UFM1P61960 85 aa7.46□□□□□ -1.21
HMGB1-203ENST00000341423 MAP4K2Q12851 820 aa7.46□□□□□ -1.21
HMGB1-203ENST00000341423 SQSTM1Q13501 440 aa7.46□□□□□ -1.21
HMGB1-203ENST00000341423 KIR2DS1Q14954 304 aa7.46□□□□□ -1.21
HMGB1-203ENST00000341423 VMACQ2NL98 169 aa7.46□□□□□ -1.21
HMGB1-203ENST00000341423 ELFN2Q5R3F8 820 aa7.46□□□□□ -1.21
HMGB1-203ENST00000341423 SYT6Q5T7P8 510 aaPredicted RBP7.46□□□□□ -1.21
HMGB1-203ENST00000341423 ZNF613Q6PF04 617 aa7.46□□□□□ -1.21
HMGB1-203ENST00000341423 OR1S1Q8NH92 325 aa7.46□□□□□ -1.21
HMGB1-203ENST00000341423 C4orf45Q96LM5 186 aa7.46□□□□□ -1.21
HMGB1-203ENST00000341423 ZNF681Q96N22 645 aa7.46□□□□□ -1.21
HMGB1-203ENST00000341423 UHRF2Q96PU4 802 aa7.46□□□□□ -1.21
HMGB1-203ENST00000341423 NICN1Q9BSH3 213 aa7.46□□□□□ -1.21
HMGB1-203ENST00000341423 ATG5Q9H1Y0 275 aa7.46□□□□□ -1.21
HMGB1-203ENST00000341423 EMC7Q9NPA0 242 aa7.46□□□□□ -1.21
HMGB1-203ENST00000341423 CA10Q9NS85 328 aa7.46□□□□□ -1.21
HMGB1-203ENST00000341423 ZNF835Q9Y2P0 537 aa7.46□□□□□ -1.21
HMGB1-203ENST00000341423 BMP2P12643 396 aa7.46□□□□□ -1.22
HMGB1-203ENST00000341423 EIF5AP63241 154 aaKnown RBP7.46□□□□□ -1.22
HMGB1-203ENST00000341423 GAMTQ14353 236 aa7.46□□□□□ -1.22
HMGB1-203ENST00000341423 EBPQ15125 230 aaKnown RBP7.46□□□□□ -1.22
HMGB1-203ENST00000341423 C18orf21Q32NC0 220 aaPredicted RBP7.46□□□□□ -1.22
HMGB1-203ENST00000341423 ZFP69Q49AA0 526 aa7.46□□□□□ -1.22
HMGB1-203ENST00000341423 HSD17B12Q53GQ0 312 aa7.46□□□□□ -1.22
HMGB1-203ENST00000341423 PRAMEF5Q5TYX0 476 aa7.46□□□□□ -1.22
HMGB1-203ENST00000341423 PRAMEF6Q5VXH4 476 aa7.46□□□□□ -1.22
HMGB1-203ENST00000341423 ZNF782Q6ZMW2 699 aaPredicted RBP7.46□□□□□ -1.22
HMGB1-203ENST00000341423 RNF113BQ8IZP6 322 aaKnown RBP7.46□□□□□ -1.22
HMGB1-203ENST00000341423 TCTEX1D2Q8WW35 142 aa7.46□□□□□ -1.22
HMGB1-203ENST00000341423 MNTQ99583 582 aa7.46□□□□□ -1.22
HMGB1-203ENST00000341423 ZNF350Q9GZX5 532 aa7.46□□□□□ -1.22
HMGB1-203ENST00000341423 KLK5Q9Y337 293 aaPredicted RBP7.46□□□□□ -1.22
HMGB1-203ENST00000341423 A0A1W2PS18 150 aa7.46□□□□□ -1.22
HMGB1-203ENST00000341423 PRKNO60260 465 aaPredicted RBP7.46□□□□□ -1.22
HMGB1-203ENST00000341423 CA6P23280 308 aa7.46□□□□□ -1.22
HMGB1-203ENST00000341423 CMC4P56277 68 aaPredicted RBP7.46□□□□□ -1.22
HMGB1-203ENST00000341423 CCSMST1Q4G0I0 132 aa7.46□□□□□ -1.22
HMGB1-203ENST00000341423 RPUSD3Q6P087 351 aaKnown RBP7.46□□□□□ -1.22
HMGB1-203ENST00000341423 SLC35E3Q7Z769 313 aa7.46□□□□□ -1.22
HMGB1-203ENST00000341423 LINC00346Q8IVM7 164 aa7.46□□□□□ -1.22
HMGB1-203ENST00000341423 OR6Q1Q8NGQ2 317 aa7.46□□□□□ -1.22
HMGB1-203ENST00000341423 OR5H2Q8NGV7 314 aa7.46□□□□□ -1.22
HMGB1-203ENST00000341423 SAT2Q96F10 170 aaPredicted RBP7.46□□□□□ -1.22
HMGB1-203ENST00000341423 DUS3LQ96G46 650 aaKnown RBP7.46□□□□□ -1.22
HMGB1-203ENST00000341423 TIMP4Q99727 224 aa7.46□□□□□ -1.22
HMGB1-203ENST00000341423 SPOCK3Q9BQ16 436 aa7.46□□□□□ -1.22
HMGB1-203ENST00000341423 C19orf43Q9BQ61 176 aa7.46□□□□□ -1.22
HMGB1-203ENST00000341423 TMEM165Q9HC07 324 aa7.46□□□□□ -1.22
HMGB1-203ENST00000341423 OR2S2Q9NQN1 319 aa7.46□□□□□ -1.22
HMGB1-203ENST00000341423 KCNE1BA0A087WTH5 132 aa7.45□□□□□ -1.22
HMGB1-203ENST00000341423 A0A0G2JLM5 398 aa7.45□□□□□ -1.22
HMGB1-203ENST00000341423 SSNA1O43805 119 aa7.45□□□□□ -1.22
HMGB1-203ENST00000341423 ZNF205O95201 554 aa7.45□□□□□ -1.22
HMGB1-203ENST00000341423 GTF2F2P13984 249 aa7.45□□□□□ -1.22
HMGB1-203ENST00000341423 GPR50Q13585 617 aa7.45□□□□□ -1.22
HMGB1-203ENST00000341423 SOWAHCQ53LP3 525 aaPredicted RBP7.45□□□□□ -1.22
HMGB1-203ENST00000341423 RNASE12Q5GAN4 147 aaKnown RBP7.45□□□□□ -1.22
HMGB1-203ENST00000341423 OR2T5Q6IEZ7 315 aa7.45□□□□□ -1.22
HMGB1-203ENST00000341423 CLECL1Q8IZS7 167 aa7.45□□□□□ -1.22
HMGB1-203ENST00000341423 PGAM4Q8N0Y7 254 aa7.45□□□□□ -1.22
HMGB1-203ENST00000341423 LYG1Q8N1E2 194 aa7.45□□□□□ -1.22
HMGB1-203ENST00000341423 OR2T29Q8NH02 315 aa7.45□□□□□ -1.22
HMGB1-203ENST00000341423 FBLIM1Q8WUP2 373 aa7.45□□□□□ -1.22
HMGB1-203ENST00000341423 TM4SF18Q96CE8 201 aa7.45□□□□□ -1.22
HMGB1-203ENST00000341423 TMEM56Q96MV1 263 aa7.45□□□□□ -1.22
HMGB1-203ENST00000341423 PCTPQ9UKL6 214 aa7.45□□□□□ -1.22
HMGB1-203ENST00000341423 NINQ8N4C6 2090 aa7.45□□□□□ -1.22
HMGB1-203ENST00000341423 ONECUT2O95948 504 aa7.45□□□□□ -1.22
HMGB1-203ENST00000341423 PRPH2P23942 346 aa7.45□□□□□ -1.22
HMGB1-203ENST00000341423 RAB7AP51149 207 aa7.45□□□□□ -1.22
HMGB1-203ENST00000341423 Q8N402 240 aa7.45□□□□□ -1.22
HMGB1-203ENST00000341423 LILRB2Q8N423 598 aa7.45□□□□□ -1.22
HMGB1-203ENST00000341423 ARL11Q969Q4 196 aa7.45□□□□□ -1.22
HMGB1-203ENST00000341423 PINX1Q96BK5 328 aaKnown RBP7.45□□□□□ -1.22
HMGB1-203ENST00000341423 S100A16Q96FQ6 103 aaKnown RBP7.45□□□□□ -1.22
HMGB1-203ENST00000341423 POLR2J2Q9GZM3 115 aaKnown RBP7.45□□□□□ -1.22
HMGB1-203ENST00000341423 KAT8Q9H7Z6 458 aaKnown RBP7.45□□□□□ -1.22
HMGB1-203ENST00000341423 SIRT7Q9NRC8 400 aa7.45□□□□□ -1.22
HMGB1-203ENST00000341423 TCRBV16S1A1N1A0A5B0 115 aa7.45□□□□□ -1.22
HMGB1-203ENST00000341423 FAM159BA6NKW6 160 aa7.45□□□□□ -1.22
HMGB1-203ENST00000341423 CHRM2P08172 466 aa7.45□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms