RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 FGD2Q7Z6J4 655 aa13.53□□□□□ -0.24
LIMS1-202ENST00000338045 LRRC28Q86X40 367 aaPredicted RBP13.53□□□□□ -0.24
LIMS1-202ENST00000338045 OR1F12Q8NHA8 337 aa13.53□□□□□ -0.24
LIMS1-202ENST00000338045 OR51E1Q8TCB6 317 aa13.53□□□□□ -0.24
LIMS1-202ENST00000338045 WNT2BQ93097 391 aa13.53□□□□□ -0.24
LIMS1-202ENST00000338045 SPTSSAQ969W0 71 aa13.53□□□□□ -0.24
LIMS1-202ENST00000338045 ZNF799Q96GE5 643 aa13.53□□□□□ -0.24
LIMS1-202ENST00000338045 GPR137Q96N19 417 aa13.53□□□□□ -0.24
LIMS1-202ENST00000338045 SRRQ9GZT4 340 aa13.53□□□□□ -0.24
LIMS1-202ENST00000338045 WNT5BQ9H1J7 359 aa13.53□□□□□ -0.24
LIMS1-202ENST00000338045 CYSLTR2Q9NS75 346 aa13.53□□□□□ -0.24
LIMS1-202ENST00000338045 ZNF224Q9NZL3 707 aa13.53□□□□□ -0.24
LIMS1-202ENST00000338045 PRSS50Q9UI38 385 aa13.53□□□□□ -0.24
LIMS1-202ENST00000338045 SPATA2Q9UM82 520 aa13.53□□□□□ -0.24
LIMS1-202ENST00000338045 F5H5K5 113 aa13.53□□□□□ -0.24
LIMS1-202ENST00000338045 ANXA2P07355 339 aaKnown RBP13.53□□□□□ -0.24
LIMS1-202ENST00000338045 ELK1P19419 428 aa13.53□□□□□ -0.24
LIMS1-202ENST00000338045 PTBP1P26599 531 aaKnown RBP eCLIP13.53□□□□□ -0.24
LIMS1-202ENST00000338045 FAPQ12884 760 aa13.53□□□□□ -0.24
LIMS1-202ENST00000338045 ACSF3Q4G176 576 aaPredicted RBP13.53□□□□□ -0.24
LIMS1-202ENST00000338045 ZNF774Q6NX45 483 aa13.53□□□□□ -0.24
LIMS1-202ENST00000338045 ANKRD11Q6UB99 2663 aaPredicted RBP13.53□□□□□ -0.24
LIMS1-202ENST00000338045 DRAM2Q6UX65 266 aa13.53□□□□□ -0.24
LIMS1-202ENST00000338045 FAM57BQ71RH2 274 aa13.53□□□□□ -0.24
LIMS1-202ENST00000338045 NAA40Q86UY6 237 aa13.53□□□□□ -0.24
LIMS1-202ENST00000338045 MED12LQ86YW9 2145 aa13.53□□□□□ -0.24
LIMS1-202ENST00000338045 OR5M9Q8NGP3 310 aa13.53□□□□□ -0.24
LIMS1-202ENST00000338045 SLC7A6Q92536 515 aa13.53□□□□□ -0.24
LIMS1-202ENST00000338045 EXTL1Q92935 676 aa13.53□□□□□ -0.24
LIMS1-202ENST00000338045 MRI1Q9BV20 369 aa13.53□□□□□ -0.24
LIMS1-202ENST00000338045 PPP1R3EQ9H7J1 279 aa13.53□□□□□ -0.24
LIMS1-202ENST00000338045 CKLFQ9UBR5 152 aa13.53□□□□□ -0.24
LIMS1-202ENST00000338045 ATPIF1Q9UII2 106 aa13.53□□□□□ -0.24
LIMS1-202ENST00000338045 CACNA1GO43497 2377 aa13.52□□□□□ -0.24
LIMS1-202ENST00000338045 A0A0U1RQV5 110 aa13.52□□□□□ -0.25
LIMS1-202ENST00000338045 A0A1B0GVI7 797 aa13.52□□□□□ -0.25
LIMS1-202ENST00000338045 E9PLN8 166 aa13.52□□□□□ -0.25
LIMS1-202ENST00000338045 TBX1O43435 398 aa13.52□□□□□ -0.25
LIMS1-202ENST00000338045 LMX1BO60663 402 aa13.52□□□□□ -0.25
LIMS1-202ENST00000338045 MAS1P04201 325 aa13.52□□□□□ -0.25
LIMS1-202ENST00000338045 DBHP09172 617 aa13.52□□□□□ -0.25
LIMS1-202ENST00000338045 PATE4P0C8F1 98 aa13.52□□□□□ -0.25
LIMS1-202ENST00000338045 SNRPBP14678 240 aaKnown RBP13.52□□□□□ -0.25
LIMS1-202ENST00000338045 ZNF12P17014 697 aa13.52□□□□□ -0.25
LIMS1-202ENST00000338045 MPGP29372 298 aa13.52□□□□□ -0.25
LIMS1-202ENST00000338045 RIN1Q13671 783 aa13.52□□□□□ -0.25
LIMS1-202ENST00000338045 XKRXQ6PP77 449 aa13.52□□□□□ -0.25
LIMS1-202ENST00000338045 FAM131AQ6UXB0 335 aa13.52□□□□□ -0.25
LIMS1-202ENST00000338045 Q6ZSR3 168 aa13.52□□□□□ -0.25
LIMS1-202ENST00000338045 FAM214BQ7L5A3 538 aa13.52□□□□□ -0.25
LIMS1-202ENST00000338045 LUZP2Q86TE4 346 aa13.52□□□□□ -0.25
LIMS1-202ENST00000338045 UBE2J2Q8N2K1 259 aa13.52□□□□□ -0.25
LIMS1-202ENST00000338045 SAMD12Q8N8I0 201 aa13.52□□□□□ -0.25
LIMS1-202ENST00000338045 PLPP7Q8NBV4 271 aa13.52□□□□□ -0.25
LIMS1-202ENST00000338045 OR5H6Q8NGV6 325 aa13.52□□□□□ -0.25
LIMS1-202ENST00000338045 CMTM3Q96MX0 182 aa13.52□□□□□ -0.25
LIMS1-202ENST00000338045 C12orf49Q9H741 205 aa13.52□□□□□ -0.25
LIMS1-202ENST00000338045 GPR84Q9NQS5 396 aa13.52□□□□□ -0.25
LIMS1-202ENST00000338045 TAS2R4Q9NYW5 299 aa13.52□□□□□ -0.25
LIMS1-202ENST00000338045 RAXQ9Y2V3 346 aa13.52□□□□□ -0.25
LIMS1-202ENST00000338045 ARHGAP21Q5T5U3 1957 aa13.51□□□□□ -0.25
LIMS1-202ENST00000338045 A0A0B4J203 849 aa13.51□□□□□ -0.25
LIMS1-202ENST00000338045 ISPDA4D126 451 aa13.51□□□□□ -0.25
LIMS1-202ENST00000338045 ANXA2P2A6NMY6 339 aa13.51□□□□□ -0.25
LIMS1-202ENST00000338045 HNRNPCP07910 306 aaKnown RBP eCLIP13.51□□□□□ -0.25
LIMS1-202ENST00000338045 ADRB1P08588 477 aa13.51□□□□□ -0.25
LIMS1-202ENST00000338045 SLC36A2Q495M3 483 aa13.51□□□□□ -0.25
LIMS1-202ENST00000338045 HES5Q5TA89 166 aa13.51□□□□□ -0.25
LIMS1-202ENST00000338045 NSUN5P2Q63ZY6 315 aa13.51□□□□□ -0.25
LIMS1-202ENST00000338045 ZNF324BQ6AW86 544 aaPredicted RBP13.51□□□□□ -0.25
LIMS1-202ENST00000338045 LYSMD2Q8IV50 215 aa13.51□□□□□ -0.25
LIMS1-202ENST00000338045 DNAAF1Q8NEP3 725 aa13.51□□□□□ -0.25
LIMS1-202ENST00000338045 AKR7LQ8NHP1 331 aa13.51□□□□□ -0.25
LIMS1-202ENST00000338045 SUN5Q8TC36 379 aa13.51□□□□□ -0.25
LIMS1-202ENST00000338045 PGAM5Q96HS1 289 aa13.51□□□□□ -0.25
LIMS1-202ENST00000338045 RHBDL2Q9NX52 303 aa13.51□□□□□ -0.25
LIMS1-202ENST00000338045 SPENQ96T58 3664 aaKnown RBP13.51□□□□□ -0.25
LIMS1-202ENST00000338045 SPTBN4Q9H254 2564 aa13.51□□□□□ -0.25
LIMS1-202ENST00000338045 MEGF11A6BM72 1044 aa13.5□□□□□ -0.25
LIMS1-202ENST00000338045 C5orf63A6NC05 138 aa13.5□□□□□ -0.25
LIMS1-202ENST00000338045 IL18BPO95998 194 aa13.5□□□□□ -0.25
LIMS1-202ENST00000338045 APOA1P02647 267 aa13.5□□□□□ -0.25
LIMS1-202ENST00000338045 EIF4EP06730 217 aaKnown RBP13.5□□□□□ -0.25
LIMS1-202ENST00000338045 CALCBP10092 127 aa13.5□□□□□ -0.25
LIMS1-202ENST00000338045 HTR5AP47898 357 aa13.5□□□□□ -0.25
LIMS1-202ENST00000338045 SLC6A9P48067 706 aa13.5□□□□□ -0.25
LIMS1-202ENST00000338045 TPTEP56180 551 aa13.5□□□□□ -0.25
LIMS1-202ENST00000338045 SCAND1P57086 179 aa13.5□□□□□ -0.25
LIMS1-202ENST00000338045 RGS21Q2M5E4 152 aa13.5□□□□□ -0.25
LIMS1-202ENST00000338045 KRTCAP3Q53RY4 240 aa13.5□□□□□ -0.25
LIMS1-202ENST00000338045 C9orf135Q5VTT2 229 aa13.5□□□□□ -0.25
LIMS1-202ENST00000338045 STEAP3Q658P3 488 aa13.5□□□□□ -0.25
LIMS1-202ENST00000338045 ZNF529Q6P280 563 aa13.5□□□□□ -0.25
LIMS1-202ENST00000338045 TFAP2EQ6VUC0 442 aa13.5□□□□□ -0.25
LIMS1-202ENST00000338045 DOK3Q7L591 496 aa13.5□□□□□ -0.25
LIMS1-202ENST00000338045 SERPINA12Q8IW75 414 aa13.5□□□□□ -0.25
LIMS1-202ENST00000338045 GDPD1Q8N9F7 314 aa13.5□□□□□ -0.25
LIMS1-202ENST00000338045 C9orf106Q8NAJ2 232 aa13.5□□□□□ -0.25
LIMS1-202ENST00000338045 OR1J2Q8NGS2 313 aa13.5□□□□□ -0.25
LIMS1-202ENST00000338045 LGALS14Q8TCE9 139 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms