RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 ELSPBP1Q96BH3 223 aa11.47□□□□□ -0.57
SDC3-201ENST00000336798 ARR3P36575 388 aa11.47□□□□□ -0.57
SDC3-201ENST00000336798 GABRG1Q8N1C3 465 aa11.47□□□□□ -0.57
SDC3-201ENST00000336798 UBTD2Q8WUN7 234 aa11.47□□□□□ -0.57
SDC3-201ENST00000336798 ASB16Q96NS5 453 aa11.47□□□□□ -0.57
SDC3-201ENST00000336798 NPTNQ9Y639 398 aa11.47□□□□□ -0.57
SDC3-201ENST00000336798 MYH7BA7E2Y1 1941 aa11.47□□□□□ -0.57
SDC3-201ENST00000336798 CCDC88AQ3V6T2 1871 aa11.47□□□□□ -0.57
SDC3-201ENST00000336798 FAM90A27PA6NNH2 459 aa11.47□□□□□ -0.57
SDC3-201ENST00000336798 HMGN4O00479 90 aa11.47□□□□□ -0.57
SDC3-201ENST00000336798 MT-ND4LP03901 98 aa11.47□□□□□ -0.57
SDC3-201ENST00000336798 SNRPNP63162 240 aaKnown RBP11.47□□□□□ -0.57
SDC3-201ENST00000336798 ZXDAP98168 799 aa11.47□□□□□ -0.57
SDC3-201ENST00000336798 DRAM2Q6UX65 266 aa11.47□□□□□ -0.57
SDC3-201ENST00000336798 SPRED1Q7Z699 444 aa11.47□□□□□ -0.57
SDC3-201ENST00000336798 ADGRG3Q86Y34 549 aa11.47□□□□□ -0.57
SDC3-201ENST00000336798 DAPP1Q9UN19 280 aa11.47□□□□□ -0.57
SDC3-201ENST00000336798 GPR31O00270 319 aa11.47□□□□□ -0.57
SDC3-201ENST00000336798 ZNF85Q03923 595 aa11.47□□□□□ -0.57
SDC3-201ENST00000336798 LHFPL2Q6ZUX7 228 aa11.47□□□□□ -0.57
SDC3-201ENST00000336798 CAMKMTQ7Z624 323 aa11.47□□□□□ -0.57
SDC3-201ENST00000336798 LYSMD2Q8IV50 215 aa11.47□□□□□ -0.57
SDC3-201ENST00000336798 SLC24A4Q8NFF2 622 aa11.47□□□□□ -0.57
SDC3-201ENST00000336798 OR13C8Q8NGS7 320 aa11.47□□□□□ -0.57
SDC3-201ENST00000336798 OLIG1Q8TAK6 271 aa11.47□□□□□ -0.57
SDC3-201ENST00000336798 SLC7A6Q92536 515 aa11.47□□□□□ -0.57
SDC3-201ENST00000336798 SEH1LQ96EE3 360 aa11.47□□□□□ -0.57
SDC3-201ENST00000336798 STACQ99469 402 aa11.47□□□□□ -0.57
SDC3-201ENST00000336798 SDF2Q99470 211 aa11.47□□□□□ -0.57
SDC3-201ENST00000336798 SLC22A20A6NK97 555 aa11.47□□□□□ -0.57
SDC3-201ENST00000336798 GPM6AP51674 278 aa11.47□□□□□ -0.57
SDC3-201ENST00000336798 NUDCD2Q8WVJ2 157 aa11.47□□□□□ -0.57
SDC3-201ENST00000336798 WBP2Q969T9 261 aa11.47□□□□□ -0.57
SDC3-201ENST00000336798 SPACA1Q9HBV2 294 aa11.47□□□□□ -0.57
SDC3-201ENST00000336798 LYRM4Q9HD34 91 aa11.47□□□□□ -0.57
SDC3-201ENST00000336798 MN1Q10571 1320 aaPredicted RBP11.46□□□□□ -0.57
SDC3-201ENST00000336798 KIR2DS1A0A191URI9 304 aa11.46□□□□□ -0.57
SDC3-201ENST00000336798 COX7A2P2O60397 106 aa11.46□□□□□ -0.57
SDC3-201ENST00000336798 RBP4P02753 201 aa11.46□□□□□ -0.57
SDC3-201ENST00000336798 NME1P15531 152 aaKnown RBP11.46□□□□□ -0.57
SDC3-201ENST00000336798 KIR2DS4P43632 304 aa11.46□□□□□ -0.57
SDC3-201ENST00000336798 DGCR2P98153 550 aa11.46□□□□□ -0.57
SDC3-201ENST00000336798 KIR2DS1Q14954 304 aa11.46□□□□□ -0.57
SDC3-201ENST00000336798 ZNF239Q16600 458 aaKnown RBP11.46□□□□□ -0.57
SDC3-201ENST00000336798 CLRN3Q8NCR9 226 aa11.46□□□□□ -0.57
SDC3-201ENST00000336798 OR8B4Q96RC9 309 aa11.46□□□□□ -0.57
SDC3-201ENST00000336798 P4HTMQ9NXG6 502 aa11.46□□□□□ -0.57
SDC3-201ENST00000336798 FLVCR2Q9UPI3 526 aa11.46□□□□□ -0.57
SDC3-201ENST00000336798 SLC22A13Q9Y226 551 aa11.46□□□□□ -0.57
SDC3-201ENST00000336798 POLDIP2Q9Y2S7 368 aa11.46□□□□□ -0.57
SDC3-201ENST00000336798 M0QZ24 198 aa11.46□□□□□ -0.57
SDC3-201ENST00000336798 EIF4E2O60573 245 aaKnown RBP11.46□□□□□ -0.57
SDC3-201ENST00000336798 CDC14BO60729 498 aa11.46□□□□□ -0.57
SDC3-201ENST00000336798 CLN3Q13286 438 aa11.46□□□□□ -0.57
SDC3-201ENST00000336798 TMEM207Q6UWW9 146 aa11.46□□□□□ -0.57
SDC3-201ENST00000336798 RYDENQ9NUL5 291 aaKnown RBP11.46□□□□□ -0.57
SDC3-201ENST00000336798 SMIM17P0DL12 118 aa11.46□□□□□ -0.57
SDC3-201ENST00000336798 ASCL1P50553 236 aa11.46□□□□□ -0.57
SDC3-201ENST00000336798 CCL7P80098 99 aa11.46□□□□□ -0.57
SDC3-201ENST00000336798 FAM209AQ5JX71 171 aa11.46□□□□□ -0.57
SDC3-201ENST00000336798 LRRTM1Q86UE6 522 aa11.46□□□□□ -0.57
SDC3-201ENST00000336798 DDOQ99489 341 aa11.46□□□□□ -0.57
SDC3-201ENST00000336798 PHF7Q9BWX1 381 aaPredicted RBP11.46□□□□□ -0.57
SDC3-201ENST00000336798 VIRMAQ69YN4 1812 aaKnown RBP11.46□□□□□ -0.58
SDC3-201ENST00000336798 PMS2P1A4D2B8 440 aa11.46□□□□□ -0.58
SDC3-201ENST00000336798 TMEM127O75204 238 aa11.46□□□□□ -0.58
SDC3-201ENST00000336798 FCGR2CP31995 323 aa11.46□□□□□ -0.58
SDC3-201ENST00000336798 RPL18Q07020 188 aaKnown RBP11.46□□□□□ -0.58
SDC3-201ENST00000336798 ZNF77Q15935 545 aa11.46□□□□□ -0.58
SDC3-201ENST00000336798 SLC38A9Q8NBW4 561 aa11.46□□□□□ -0.58
SDC3-201ENST00000336798 OR10P1Q8NGE3 313 aa11.46□□□□□ -0.58
SDC3-201ENST00000336798 ACHEP22303 614 aa11.46□□□□□ -0.58
SDC3-201ENST00000336798 CST5P28325 142 aaPredicted RBP11.46□□□□□ -0.58
SDC3-201ENST00000336798 MPGP29372 298 aa11.46□□□□□ -0.58
SDC3-201ENST00000336798 ECI1P42126 302 aa11.46□□□□□ -0.58
SDC3-201ENST00000336798 CORO2AQ92828 525 aa11.46□□□□□ -0.58
SDC3-201ENST00000336798 TMEM9BQ9NQ34 198 aa11.46□□□□□ -0.58
SDC3-201ENST00000336798 PSENENQ9NZ42 101 aa11.46□□□□□ -0.58
SDC3-201ENST00000336798 ST8SIA3O43173 380 aa11.45□□□□□ -0.58
SDC3-201ENST00000336798 SPI1P17947 270 aa11.45□□□□□ -0.58
SDC3-201ENST00000336798 COL13A1Q5TAT6 717 aaPredicted RBP11.45□□□□□ -0.58
SDC3-201ENST00000336798 STUMQ69YW2 141 aa11.45□□□□□ -0.58
SDC3-201ENST00000336798 H3F3CQ6NXT2 135 aa11.45□□□□□ -0.58
SDC3-201ENST00000336798 GTF2H5Q6ZYL4 71 aa11.45□□□□□ -0.58
SDC3-201ENST00000336798 ZDHHC23Q8IYP9 409 aa11.45□□□□□ -0.58
SDC3-201ENST00000336798 SLC25A43Q8WUT9 341 aaPredicted RBP11.45□□□□□ -0.58
SDC3-201ENST00000336798 HINT3Q9NQE9 182 aaKnown RBP11.45□□□□□ -0.58
SDC3-201ENST00000336798 NAGKQ9UJ70 344 aa11.45□□□□□ -0.58
SDC3-201ENST00000336798 RGPD8O14715 1765 aaPredicted RBP11.45□□□□□ -0.58
SDC3-201ENST00000336798 DEFB108AA8MXU0 73 aa11.45□□□□□ -0.58
SDC3-201ENST00000336798 OPN1MWP04001 364 aa11.45□□□□□ -0.58
SDC3-201ENST00000336798 OPN1MW2P0DN77 364 aa11.45□□□□□ -0.58
SDC3-201ENST00000336798 OPN1MW3P0DN78 364 aa11.45□□□□□ -0.58
SDC3-201ENST00000336798 OR2L13Q8N349 312 aa11.45□□□□□ -0.58
SDC3-201ENST00000336798 SARAFQ96BY9 339 aa11.45□□□□□ -0.58
SDC3-201ENST00000336798 ZNF391Q9UJN7 358 aa11.45□□□□□ -0.58
SDC3-201ENST00000336798 MMP17Q9ULZ9 603 aa11.45□□□□□ -0.58
SDC3-201ENST00000336798 A0A1W2PRD5 423 aa11.45□□□□□ -0.58
SDC3-201ENST00000336798 A0A1W2PRF3 423 aa11.45□□□□□ -0.58
SDC3-201ENST00000336798 A0A1W2PRM7 423 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms