RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 MYRFQ9Y2G1 1151 aa13.46□□□□□ -0.25
CLN3-201ENST00000333496 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.46□□□□□ -0.257e-9■■□□□ 13.5
CLN3-201ENST00000333496 SONP18583 2426 aaKnown RBP13.46□□□□□ -0.26
CLN3-201ENST00000333496 PLSCR5A0PG75 271 aa13.46□□□□□ -0.26
CLN3-201ENST00000333496 F5H5K5 113 aa13.46□□□□□ -0.26
CLN3-201ENST00000333496 ZNF593O00488 134 aaPredicted RBP13.46□□□□□ -0.26
CLN3-201ENST00000333496 SPRY3O43610 288 aa13.46□□□□□ -0.26
CLN3-201ENST00000333496 ADH4P08319 380 aa13.46□□□□□ -0.26
CLN3-201ENST00000333496 TACSTD2P09758 323 aa13.46□□□□□ -0.26
CLN3-201ENST00000333496 IGHV4-31P0DP07 118 aa13.46□□□□□ -0.26
CLN3-201ENST00000333496 KITLGP21583 273 aa13.46□□□□□ -0.26
CLN3-201ENST00000333496 ACHEP22303 614 aa13.46□□□□□ -0.26
CLN3-201ENST00000333496 ANOS1P23352 680 aa13.46□□□□□ -0.26
CLN3-201ENST00000333496 CRISP1P54107 249 aa13.46□□□□□ -0.26
CLN3-201ENST00000333496 MRPS11P82912 194 aaKnown RBP13.46□□□□□ -0.26
CLN3-201ENST00000333496 ECH1Q13011 328 aa13.46□□□□□ -0.26
CLN3-201ENST00000333496 TSTQ16762 297 aaKnown RBP13.46□□□□□ -0.26
CLN3-201ENST00000333496 SPRNQ5BIV9 151 aa13.46□□□□□ -0.26
CLN3-201ENST00000333496 TEX30Q5JUR7 227 aa13.46□□□□□ -0.26
CLN3-201ENST00000333496 Q6ZR03 302 aa13.46□□□□□ -0.26
CLN3-201ENST00000333496 DCXRQ7Z4W1 244 aa13.46□□□□□ -0.26
CLN3-201ENST00000333496 HIPK1Q86Z02 1210 aa13.46□□□□□ -0.26
CLN3-201ENST00000333496 PARP8Q8N3A8 854 aa13.46□□□□□ -0.26
CLN3-201ENST00000333496 APOBEC3DQ96AK3 386 aaPredicted RBP13.46□□□□□ -0.26
CLN3-201ENST00000333496 COG8Q96MW5 612 aa13.46□□□□□ -0.26
CLN3-201ENST00000333496 C1QTNF5Q9BXJ0 243 aa13.46□□□□□ -0.26
CLN3-201ENST00000333496 ZNF275Q9NSD4 429 aaPredicted RBP13.46□□□□□ -0.26
CLN3-201ENST00000333496 DDX28Q9NUL7 540 aaKnown RBP13.46□□□□□ -0.26
CLN3-201ENST00000333496 PTTG3PQ9NZH4 202 aa13.46□□□□□ -0.26
CLN3-201ENST00000333496 KIF17Q9P2E2 1029 aa13.46□□□□□ -0.26
CLN3-201ENST00000333496 LRP5LA4QPB2 252 aa13.45□□□□□ -0.26
CLN3-201ENST00000333496 TIMM8AO60220 97 aaPredicted RBP13.45□□□□□ -0.26
CLN3-201ENST00000333496 CDC14BO60729 498 aa13.45□□□□□ -0.26
CLN3-201ENST00000333496 MITFO75030 526 aaPredicted RBP13.45□□□□□ -0.26
CLN3-201ENST00000333496 GLCEO94923 617 aa13.45□□□□□ -0.26
CLN3-201ENST00000333496 MT-ND5P03915 603 aa13.45□□□□□ -0.26
CLN3-201ENST00000333496 SPARCP09486 303 aa13.45□□□□□ -0.26
CLN3-201ENST00000333496 OTX1P32242 354 aaPredicted RBP13.45□□□□□ -0.26
CLN3-201ENST00000333496 LIPAP38571 399 aa13.45□□□□□ -0.26
CLN3-201ENST00000333496 KCTD21Q4G0X4 260 aa13.45□□□□□ -0.26
CLN3-201ENST00000333496 FAM209AQ5JX71 171 aa13.45□□□□□ -0.26
CLN3-201ENST00000333496 PLBD1Q6P4A8 553 aa13.45□□□□□ -0.26
CLN3-201ENST00000333496 FBXW12Q6X9E4 464 aa13.45□□□□□ -0.26
CLN3-201ENST00000333496 TSPAN14Q8NG11 270 aa13.45□□□□□ -0.26
CLN3-201ENST00000333496 ST7LQ8TDW4 575 aa13.45□□□□□ -0.26
CLN3-201ENST00000333496 OTULINQ96BN8 352 aa13.45□□□□□ -0.26
CLN3-201ENST00000333496 SOX7Q9BT81 388 aa13.45□□□□□ -0.26
CLN3-201ENST00000333496 OR51V1Q9H2C8 321 aa13.45□□□□□ -0.26
CLN3-201ENST00000333496 MARCH7Q9H992 704 aa13.45□□□□□ -0.26
CLN3-201ENST00000333496 CYSLTR2Q9NS75 346 aa13.45□□□□□ -0.26
CLN3-201ENST00000333496 CGGBP1Q9UFW8 167 aaPredicted RBP13.45□□□□□ -0.26
CLN3-201ENST00000333496 PRR23D1E9PI22 279 aaPredicted RBP13.44□□□□□ -0.26
CLN3-201ENST00000333496 TLX2O43763 284 aaPredicted RBP13.44□□□□□ -0.26
CLN3-201ENST00000333496 HMGN1P05114 100 aa13.44□□□□□ -0.26
CLN3-201ENST00000333496 PRR23D2P0DMB1 279 aaPredicted RBP13.44□□□□□ -0.26
CLN3-201ENST00000333496 RAC2P15153 192 aa13.44□□□□□ -0.26
CLN3-201ENST00000333496 ATP6V1B1P15313 513 aa13.44□□□□□ -0.26
CLN3-201ENST00000333496 MYF6P23409 242 aa13.44□□□□□ -0.26
CLN3-201ENST00000333496 IL2RGP31785 369 aa13.44□□□□□ -0.26
CLN3-201ENST00000333496 CRYBB2P43320 205 aa13.44□□□□□ -0.26
CLN3-201ENST00000333496 BLVRAP53004 296 aa13.44□□□□□ -0.26
CLN3-201ENST00000333496 CDK5R2Q13319 367 aa13.44□□□□□ -0.26
CLN3-201ENST00000333496 PTGES3Q15185 160 aaKnown RBP13.44□□□□□ -0.26
CLN3-201ENST00000333496 KDM4DQ6B0I6 523 aa13.44□□□□□ -0.26
CLN3-201ENST00000333496 CPOQ8IVL8 374 aa13.44□□□□□ -0.26
CLN3-201ENST00000333496 TIGD4Q8IY51 512 aa13.44□□□□□ -0.26
CLN3-201ENST00000333496 OR5L1Q8NGL2 311 aa13.44□□□□□ -0.26
CLN3-201ENST00000333496 TFAP2CQ92754 450 aa13.44□□□□□ -0.26
CLN3-201ENST00000333496 GABARAPL1Q9H0R8 117 aa13.44□□□□□ -0.26
CLN3-201ENST00000333496 DECR2Q9NUI1 292 aa13.44□□□□□ -0.26
CLN3-201ENST00000333496 ZDHHC8Q9ULC8 765 aa13.44□□□□□ -0.26
CLN3-201ENST00000333496 PCDHGB5Q9Y5G0 923 aa13.44□□□□□ -0.26
CLN3-201ENST00000333496 CACNG2Q9Y698 323 aa13.44□□□□□ -0.26
CLN3-201ENST00000333496 M0R135 149 aa13.43□□□□□ -0.26
CLN3-201ENST00000333496 DLGAP1O14490 977 aa13.43□□□□□ -0.26
CLN3-201ENST00000333496 WNT9BO14905 357 aa13.43□□□□□ -0.26
CLN3-201ENST00000333496 PAICSP22234 425 aaKnown RBP13.43□□□□□ -0.26
CLN3-201ENST00000333496 EPHA2P29317 976 aa13.43□□□□□ -0.26
CLN3-201ENST00000333496 ALDH3A2P51648 485 aa13.43□□□□□ -0.26
CLN3-201ENST00000333496 USP51Q70EK9 711 aa13.43□□□□□ -0.26
CLN3-201ENST00000333496 DPY19L4Q7Z388 723 aa13.43□□□□□ -0.26
CLN3-201ENST00000333496 ERI1Q8IV48 349 aaKnown RBP13.43□□□□□ -0.26
CLN3-201ENST00000333496 BBS1Q8NFJ9 593 aa13.43□□□□□ -0.26
CLN3-201ENST00000333496 SLAMF6Q96DU3 332 aa13.43□□□□□ -0.26
CLN3-201ENST00000333496 ZMYND19Q96E35 227 aaPredicted RBP13.43□□□□□ -0.26
CLN3-201ENST00000333496 ZNF799Q96GE5 643 aa13.43□□□□□ -0.26
CLN3-201ENST00000333496 INTS14Q96SY0 518 aa13.43□□□□□ -0.26
CLN3-201ENST00000333496 ADI1Q9BV57 179 aa13.43□□□□□ -0.26
CLN3-201ENST00000333496 OSBPL10Q9BXB5 764 aa13.43□□□□□ -0.26
CLN3-201ENST00000333496 SAP30LQ9HAJ7 183 aa13.43□□□□□ -0.26
CLN3-201ENST00000333496 KRT84Q9NSB2 600 aa13.43□□□□□ -0.26
CLN3-201ENST00000333496 USE1Q9NZ43 259 aa13.43□□□□□ -0.26
CLN3-201ENST00000333496 IGHV1-69-2A0A0G2JMI3 117 aa13.42□□□□□ -0.26
CLN3-201ENST00000333496 C5orf63A6NC05 138 aa13.42□□□□□ -0.26
CLN3-201ENST00000333496 TPD52L2O43399 206 aaKnown RBP13.42□□□□□ -0.26
CLN3-201ENST00000333496 LCATP04180 440 aa13.42□□□□□ -0.26
CLN3-201ENST00000333496 ALPLP05186 524 aa13.42□□□□□ -0.26
CLN3-201ENST00000333496 CD55P08174 381 aa13.42□□□□□ -0.26
CLN3-201ENST00000333496 SLC2A5P22732 501 aa13.42□□□□□ -0.26
CLN3-201ENST00000333496 GPR6P46095 362 aaPredicted RBP13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms