RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 LAMB4A4D0S4 1761 aa12.65□□□□□ -0.38
CSPG4-201ENST00000308508 ARRDC5A6NEK1 342 aa12.65□□□□□ -0.38
CSPG4-201ENST00000308508 ZAR1LA6NP61 321 aa12.65□□□□□ -0.38
CSPG4-201ENST00000308508 TOX3O15405 576 aaPredicted RBP12.65□□□□□ -0.38
CSPG4-201ENST00000308508 FZD6O60353 706 aa12.65□□□□□ -0.38
CSPG4-201ENST00000308508 BTNL3Q6UXE8 466 aa12.65□□□□□ -0.38
CSPG4-201ENST00000308508 OR8B4Q96RC9 309 aa12.65□□□□□ -0.38
CSPG4-201ENST00000308508 AKIP1Q9NQ31 210 aa12.65□□□□□ -0.38
CSPG4-201ENST00000308508 ARID1AO14497 2285 aa12.65□□□□□ -0.38
CSPG4-201ENST00000308508 EIF4E2O60573 245 aaKnown RBP12.65□□□□□ -0.39
CSPG4-201ENST00000308508 OR5H8P0DN80 308 aa12.64□□□□□ -0.39
CSPG4-201ENST00000308508 PRTGQ2VWP7 1150 aa12.64□□□□□ -0.39
CSPG4-201ENST00000308508 LYSMD4Q5XG99 296 aa12.64□□□□□ -0.39
CSPG4-201ENST00000308508 RNASEKQ6P5S7 137 aaKnown RBP12.64□□□□□ -0.39
CSPG4-201ENST00000308508 HSFX1Q9UBD0 423 aa12.64□□□□□ -0.39
CSPG4-201ENST00000308508 NID1P14543 1247 aa12.64□□□□□ -0.39
CSPG4-201ENST00000308508 MEOX2P50222 304 aa12.64□□□□□ -0.39
CSPG4-201ENST00000308508 UBE2MP61081 183 aaKnown RBP12.64□□□□□ -0.39
CSPG4-201ENST00000308508 PJVKQ0ZLH3 352 aa12.64□□□□□ -0.39
CSPG4-201ENST00000308508 INSM2Q96T92 566 aaPredicted RBP12.64□□□□□ -0.39
CSPG4-201ENST00000308508 ESRP2Q9H6T0 727 aaKnown RBP12.64□□□□□ -0.39
CSPG4-201ENST00000308508 LYRM4Q9HD34 91 aa12.64□□□□□ -0.39
CSPG4-201ENST00000308508 OR13C5Q8NGS8 318 aa12.64□□□□□ -0.39
CSPG4-201ENST00000308508 FLVCR2Q9UPI3 526 aa12.64□□□□□ -0.39
CSPG4-201ENST00000308508 CD3DP04234 171 aa12.64□□□□□ -0.39
CSPG4-201ENST00000308508 GPR85P60893 370 aa12.64□□□□□ -0.39
CSPG4-201ENST00000308508 FUNDC1Q8IVP5 155 aa12.64□□□□□ -0.39
CSPG4-201ENST00000308508 SYS1Q8N2H4 156 aa12.64□□□□□ -0.39
CSPG4-201ENST00000308508 CD38P28907 300 aa12.64□□□□□ -0.39
CSPG4-201ENST00000308508 UBE2L5PA0A1B0GUS4 154 aa12.64□□□□□ -0.39
CSPG4-201ENST00000308508 PIAS2O75928 621 aa12.64□□□□□ -0.39
CSPG4-201ENST00000308508 HIST1H1CP16403 213 aaKnown RBP12.64□□□□□ -0.39
CSPG4-201ENST00000308508 PAX5Q02548 391 aa12.64□□□□□ -0.39
CSPG4-201ENST00000308508 TMEM128Q5BJH2 165 aa12.64□□□□□ -0.39
CSPG4-201ENST00000308508 BHLHE23Q8NDY6 225 aa12.64□□□□□ -0.39
CSPG4-201ENST00000308508 OR4S1Q8NGB4 309 aa12.64□□□□□ -0.39
CSPG4-201ENST00000308508 MARCH1Q8TCQ1 289 aa12.64□□□□□ -0.39
CSPG4-201ENST00000308508 YIPF6Q96EC8 236 aa12.64□□□□□ -0.39
CSPG4-201ENST00000308508 POMT2Q9UKY4 750 aa12.64□□□□□ -0.39
CSPG4-201ENST00000308508 PLRG1O43660 514 aaKnown RBP12.63□□□□□ -0.39
CSPG4-201ENST00000308508 FABP5Q01469 135 aa12.63□□□□□ -0.39
CSPG4-201ENST00000308508 ASCC3Q8N3C0 2202 aaKnown RBP12.63□□□□□ -0.39
CSPG4-201ENST00000308508 A0A1B0GTQ1 180 aa12.63□□□□□ -0.39
CSPG4-201ENST00000308508 ARSAP15289 507 aa12.63□□□□□ -0.39
CSPG4-201ENST00000308508 FAAP20Q6NZ36 180 aa12.63□□□□□ -0.39
CSPG4-201ENST00000308508 TMPRSS11FQ6ZWK6 438 aa12.63□□□□□ -0.39
CSPG4-201ENST00000308508 SLAMF6Q96DU3 332 aa12.63□□□□□ -0.39
CSPG4-201ENST00000308508 IGKV6D-21A0A0A0MT36 114 aa12.63□□□□□ -0.39
CSPG4-201ENST00000308508 SDCBPO00560 298 aaPredicted RBP12.63□□□□□ -0.39
CSPG4-201ENST00000308508 RGS13O14921 159 aa12.63□□□□□ -0.39
CSPG4-201ENST00000308508 PNLIPRP3Q17RR3 467 aa12.63□□□□□ -0.39
CSPG4-201ENST00000308508 ABLIM2Q6H8Q1 611 aa12.63□□□□□ -0.39
CSPG4-201ENST00000308508 EDAQ92838 391 aa12.63□□□□□ -0.39
CSPG4-201ENST00000308508 SIRT3Q9NTG7 399 aaPredicted RBP12.63□□□□□ -0.39
CSPG4-201ENST00000308508 NAT8BQ9UHF3 227 aa12.63□□□□□ -0.39
CSPG4-201ENST00000308508 RGPD8O14715 1765 aaPredicted RBP12.63□□□□□ -0.39
CSPG4-201ENST00000308508 GPR37O15354 613 aa12.63□□□□□ -0.39
CSPG4-201ENST00000308508 NRASP01111 189 aa12.63□□□□□ -0.39
CSPG4-201ENST00000308508 RPL29P47914 159 aaKnown RBP12.63□□□□□ -0.39
CSPG4-201ENST00000308508 SPCS3P61009 180 aa12.63□□□□□ -0.39
CSPG4-201ENST00000308508 RPS23P62266 143 aaKnown RBP12.63□□□□□ -0.39
CSPG4-201ENST00000308508 TRNP1Q6NT89 227 aa12.63□□□□□ -0.39
CSPG4-201ENST00000308508 DLEU7Q6UYE1 221 aa12.63□□□□□ -0.39
CSPG4-201ENST00000308508 TMEM99Q8N816 258 aa12.63□□□□□ -0.39
CSPG4-201ENST00000308508 OR51E1Q8TCB6 317 aa12.63□□□□□ -0.39
CSPG4-201ENST00000308508 BCL2L2Q92843 193 aaPredicted RBP12.63□□□□□ -0.39
CSPG4-201ENST00000308508 SLC5A6Q9Y289 635 aa12.63□□□□□ -0.39
CSPG4-201ENST00000308508 IL5P05113 134 aa12.63□□□□□ -0.39
CSPG4-201ENST00000308508 MENTQ9BUN1 341 aa12.63□□□□□ -0.39
CSPG4-201ENST00000308508 SLC35B3Q9H1N7 401 aa12.63□□□□□ -0.39
CSPG4-201ENST00000308508 TRAV1-2A0A0B4J238 106 aa12.63□□□□□ -0.39
CSPG4-201ENST00000308508 FAM24AA6NFZ4 105 aa12.63□□□□□ -0.39
CSPG4-201ENST00000308508 TAPBPO15533 448 aa12.63□□□□□ -0.39
CSPG4-201ENST00000308508 SLCO2B1O94956 709 aa12.63□□□□□ -0.39
CSPG4-201ENST00000308508 CST5P28325 142 aaPredicted RBP12.63□□□□□ -0.39
CSPG4-201ENST00000308508 SNRPEP62304 92 aaKnown RBP12.63□□□□□ -0.39
CSPG4-201ENST00000308508 TPBGQ13641 420 aa12.63□□□□□ -0.39
CSPG4-201ENST00000308508 LAIR1Q6GTX8 287 aa12.63□□□□□ -0.39
CSPG4-201ENST00000308508 TMEM64Q6YI46 380 aa12.63□□□□□ -0.39
CSPG4-201ENST00000308508 OR2T6Q8NHC8 308 aa12.63□□□□□ -0.39
CSPG4-201ENST00000308508 SYT11Q9BT88 431 aa12.63□□□□□ -0.39
CSPG4-201ENST00000308508 LANCL2Q9NS86 450 aa12.63□□□□□ -0.39
CSPG4-201ENST00000308508 OR5V1Q9UGF6 321 aa12.63□□□□□ -0.39
CSPG4-201ENST00000308508 COL14A1Q05707 1796 aaKnown RBP12.63□□□□□ -0.39
CSPG4-201ENST00000308508 ANKRD36CQ5JPF3 1778 aa12.63□□□□□ -0.39
CSPG4-201ENST00000308508 SHHQ15465 462 aa12.63□□□□□ -0.39
CSPG4-201ENST00000308508 CDKN3Q16667 212 aa12.63□□□□□ -0.39
CSPG4-201ENST00000308508 DHRS4L2Q6PKH6 230 aa12.63□□□□□ -0.39
CSPG4-201ENST00000308508 TMEFF1Q8IYR6 380 aa12.63□□□□□ -0.39
CSPG4-201ENST00000308508 TMEM229BQ8NBD8 167 aa12.63□□□□□ -0.39
CSPG4-201ENST00000308508 SMIM4Q8WVI0 70 aa12.63□□□□□ -0.39
CSPG4-201ENST00000308508 TAAR9Q96RI9 348 aa12.63□□□□□ -0.39
CSPG4-201ENST00000308508 NARFLQ9H6Q4 476 aa12.63□□□□□ -0.39
CSPG4-201ENST00000308508 LMAN1LQ9HAT1 526 aa12.63□□□□□ -0.39
CSPG4-201ENST00000308508 CTNSO60931 367 aa12.62□□□□□ -0.39
CSPG4-201ENST00000308508 GLI4P10075 376 aa12.62□□□□□ -0.39
CSPG4-201ENST00000308508 FAM71E1Q6IPT2 247 aa12.62□□□□□ -0.39
CSPG4-201ENST00000308508 ADAMTSL4Q6UY14 1074 aa12.62□□□□□ -0.39
CSPG4-201ENST00000308508 MARCH3Q86UD3 253 aa12.62□□□□□ -0.39
CSPG4-201ENST00000308508 LSRQ86X29 649 aaPredicted RBP12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms