RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 SF3B6Q9Y3B4 125 aaKnown RBP17.46■□□□□ 0.39
USP48-201ENST00000308271 A0A1W2PPV4 95 aa17.45■□□□□ 0.38
USP48-201ENST00000308271 C9orf170A2RU37 121 aa17.45■□□□□ 0.38
USP48-201ENST00000308271 TRAPPC2LH3BP13 241 aa17.45■□□□□ 0.38
USP48-201ENST00000308271 CDK2AP1O14519 115 aa17.45■□□□□ 0.38
USP48-201ENST00000308271 CFIP05156 583 aa17.45■□□□□ 0.38
USP48-201ENST00000308271 CD1CP29017 333 aa17.45■□□□□ 0.38
USP48-201ENST00000308271 DVL1P1P54792 670 aaPredicted RBP17.45■□□□□ 0.38
USP48-201ENST00000308271 RAB11AP62491 216 aa17.45■□□□□ 0.38
USP48-201ENST00000308271 MRPS21P82921 87 aaKnown RBP17.45■□□□□ 0.38
USP48-201ENST00000308271 SEZ6L2Q6UXD5 910 aa17.45■□□□□ 0.38
USP48-201ENST00000308271 ZNF75AQ96N20 296 aa17.45■□□□□ 0.38
USP48-201ENST00000308271 CHST11Q9NPF2 352 aa17.45■□□□□ 0.38
USP48-201ENST00000308271 DNAJB12Q9NXW2 375 aaKnown RBP17.45■□□□□ 0.38
USP48-201ENST00000308271 POM121BA6NF01 834 aa17.45■□□□□ 0.38
USP48-201ENST00000308271 OR6C6A6NF89 314 aa17.45■□□□□ 0.38
USP48-201ENST00000308271 DUS4LO95620 317 aaKnown RBP17.45■□□□□ 0.38
USP48-201ENST00000308271 SERPINA7P05543 415 aa17.45■□□□□ 0.38
USP48-201ENST00000308271 ZNF684Q5T5D7 378 aa17.45■□□□□ 0.38
USP48-201ENST00000308271 MRM1Q6IN84 353 aaKnown RBP17.45■□□□□ 0.38
USP48-201ENST00000308271 TMPPEQ6ZT21 453 aa17.45■□□□□ 0.38
USP48-201ENST00000308271 ZNF100Q8IYN0 542 aa17.45■□□□□ 0.38
USP48-201ENST00000308271 OR5AP2Q8NGF4 316 aa17.45■□□□□ 0.38
USP48-201ENST00000308271 SPACA5Q96QH8 159 aa17.45■□□□□ 0.38
USP48-201ENST00000308271 PCDHGA9Q9Y5G4 932 aaKnown RBP17.45■□□□□ 0.38
USP48-201ENST00000308271 METAP1P53582 386 aa17.45■□□□□ 0.38
USP48-201ENST00000308271 BTG2P78543 158 aa17.45■□□□□ 0.38
USP48-201ENST00000308271 ZIC1Q15915 447 aa17.45■□□□□ 0.38
USP48-201ENST00000308271 C19orf48Q6RUI8 117 aa17.45■□□□□ 0.38
USP48-201ENST00000308271 OR5L1Q8NGL2 311 aa17.45■□□□□ 0.38
USP48-201ENST00000308271 TPSD1Q9BZJ3 242 aa17.45■□□□□ 0.38
USP48-201ENST00000308271 SLC17A4Q9Y2C5 497 aa17.45■□□□□ 0.38
USP48-201ENST00000308271 A6NLC8 198 aa17.45■□□□□ 0.38
USP48-201ENST00000308271 CD96P40200 585 aa17.45■□□□□ 0.38
USP48-201ENST00000308271 SAT2Q96F10 170 aaPredicted RBP17.45■□□□□ 0.38
USP48-201ENST00000308271 MRGPRX3Q96LB0 322 aa17.45■□□□□ 0.38
USP48-201ENST00000308271 TMEM100Q9NV29 134 aa17.45■□□□□ 0.38
USP48-201ENST00000308271 INPP5JQ15735 1006 aaPredicted RBP17.44■□□□□ 0.38
USP48-201ENST00000308271 TOMM34Q15785 309 aaPredicted RBP17.44■□□□□ 0.38
USP48-201ENST00000308271 OR52W1Q6IF63 320 aa17.44■□□□□ 0.38
USP48-201ENST00000308271 CPEB2Q7Z5Q1 589 aaKnown RBP17.44■□□□□ 0.38
USP48-201ENST00000308271 PRR18Q8N4B5 295 aa17.44■□□□□ 0.38
USP48-201ENST00000308271 ANKRD9Q96BM1 317 aaPredicted RBP17.44■□□□□ 0.38
USP48-201ENST00000308271 EMC6Q9BV81 110 aa17.44■□□□□ 0.38
USP48-201ENST00000308271 BCO1Q9HAY6 547 aa17.44■□□□□ 0.38
USP48-201ENST00000308271 PLEKHA3Q9HB20 300 aa17.44■□□□□ 0.38
USP48-201ENST00000308271 SIRT4Q9Y6E7 314 aaPredicted RBP17.44■□□□□ 0.38
USP48-201ENST00000308271 NFYBP25208 207 aa17.44■□□□□ 0.38
USP48-201ENST00000308271 AKR1C3P42330 323 aa17.44■□□□□ 0.38
USP48-201ENST00000308271 HTR5AP47898 357 aa17.44■□□□□ 0.38
USP48-201ENST00000308271 PCK2Q16822 640 aa17.44■□□□□ 0.38
USP48-201ENST00000308271 OR4N2Q8NGD1 307 aa17.44■□□□□ 0.38
USP48-201ENST00000308271 PSMF1Q92530 271 aa17.44■□□□□ 0.38
USP48-201ENST00000308271 PBOV1Q9GZY1 135 aa17.44■□□□□ 0.38
USP48-201ENST00000308271 TMPRSS5Q9H3S3 457 aa17.44■□□□□ 0.38
USP48-201ENST00000308271 UQCC1Q9NVA1 299 aa17.44■□□□□ 0.38
USP48-201ENST00000308271 TLCD2A6NGC4 264 aa17.44■□□□□ 0.38
USP48-201ENST00000308271 PRTGQ2VWP7 1150 aa17.44■□□□□ 0.38
USP48-201ENST00000308271 AGBL4Q5VU57 503 aa17.44■□□□□ 0.38
USP48-201ENST00000308271 FAHD2BQ6P2I3 314 aaPredicted RBP17.44■□□□□ 0.38
USP48-201ENST00000308271 SPPL3Q8TCT6 385 aa17.44■□□□□ 0.38
USP48-201ENST00000308271 FAHD2AQ96GK7 314 aa17.44■□□□□ 0.38
USP48-201ENST00000308271 ASB16Q96NS5 453 aa17.44■□□□□ 0.38
USP48-201ENST00000308271 DHCR7Q9UBM7 475 aaKnown RBP17.44■□□□□ 0.38
USP48-201ENST00000308271 GHRLQ9UBU3 117 aa17.44■□□□□ 0.38
USP48-201ENST00000308271 PIGLQ9Y2B2 252 aa17.44■□□□□ 0.38
USP48-201ENST00000308271 ZNF831Q5JPB2 1677 aa17.44■□□□□ 0.38
USP48-201ENST00000308271 AKR7A3O95154 331 aa17.43■□□□□ 0.38
USP48-201ENST00000308271 HTD2P86397 168 aa17.43■□□□□ 0.38
USP48-201ENST00000308271 ADIRFQ15847 76 aa17.43■□□□□ 0.38
USP48-201ENST00000308271 PDZD11Q5EBL8 140 aa17.43■□□□□ 0.38
USP48-201ENST00000308271 RSC1A1Q92681 617 aa17.43■□□□□ 0.38
USP48-201ENST00000308271 C6orf106Q9H6K1 298 aaPredicted RBP17.43■□□□□ 0.38
USP48-201ENST00000308271 ZFP64Q9NPA5 681 aa17.43■□□□□ 0.38
USP48-201ENST00000308271 GPR84Q9NQS5 396 aa17.43■□□□□ 0.38
USP48-201ENST00000308271 MED9Q9NWA0 146 aa17.43■□□□□ 0.38
USP48-201ENST00000308271 GAB2Q9UQC2 676 aa17.43■□□□□ 0.38
USP48-201ENST00000308271 PCDHGA5Q9Y5G8 931 aa17.43■□□□□ 0.38
USP48-201ENST00000308271 ZFP92A6NM28 416 aa17.43■□□□□ 0.38
USP48-201ENST00000308271 NTN1O95631 604 aa17.43■□□□□ 0.38
USP48-201ENST00000308271 F10P00742 488 aa17.43■□□□□ 0.38
USP48-201ENST00000308271 CXCL10P02778 98 aa17.43■□□□□ 0.38
USP48-201ENST00000308271 CA3P07451 260 aa17.43■□□□□ 0.38
USP48-201ENST00000308271 CXCL2P19875 107 aa17.43■□□□□ 0.38
USP48-201ENST00000308271 MSX1P28360 303 aa17.43■□□□□ 0.38
USP48-201ENST00000308271 HTRA4P83105 476 aaPredicted RBP17.43■□□□□ 0.38
USP48-201ENST00000308271 GUK1Q16774 197 aa17.43■□□□□ 0.38
USP48-201ENST00000308271 OTPQ5XKR4 325 aa17.43■□□□□ 0.38
USP48-201ENST00000308271 DPPA2Q7Z7J5 298 aa17.43■□□□□ 0.38
USP48-201ENST00000308271 C15orf54Q8N8G6 183 aa17.43■□□□□ 0.38
USP48-201ENST00000308271 SHDQ96IW2 340 aa17.43■□□□□ 0.38
USP48-201ENST00000308271 ZNF426Q9BUY5 554 aa17.43■□□□□ 0.38
USP48-201ENST00000308271 LRP12Q9Y561 859 aa17.43■□□□□ 0.38
USP48-201ENST00000308271 IGF2P01344 180 aa17.43■□□□□ 0.38
USP48-201ENST00000308271 AADACP22760 399 aa17.43■□□□□ 0.38
USP48-201ENST00000308271 HAGHQ16775 308 aa17.43■□□□□ 0.38
USP48-201ENST00000308271 CA10Q9NS85 328 aa17.43■□□□□ 0.38
USP48-201ENST00000308271 DNAJB11Q9UBS4 358 aa17.43■□□□□ 0.38
USP48-201ENST00000308271 GPR160Q9UJ42 338 aa17.43■□□□□ 0.38
USP48-201ENST00000308271 ANKRD30BLA7E2S9 258 aa17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms