RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 RAB22AQ9UL26 194 aa10.27□□□□□ -0.76
VPS4A-201ENST00000254950 TMEM127O75204 238 aa10.27□□□□□ -0.77
VPS4A-201ENST00000254950 HLA-HP01893 362 aa10.27□□□□□ -0.77
VPS4A-201ENST00000254950 IRF2P14316 349 aa10.27□□□□□ -0.77
VPS4A-201ENST00000254950 LIMK1P53667 647 aa10.27□□□□□ -0.77
VPS4A-201ENST00000254950 PABPC1L2AQ5JQF8 200 aa10.27□□□□□ -0.77
VPS4A-201ENST00000254950 MTFR2Q6P444 385 aa10.27□□□□□ -0.77
VPS4A-201ENST00000254950 VHLLQ6RSH7 139 aa10.27□□□□□ -0.77
VPS4A-201ENST00000254950 BOLLQ8N9W6 283 aaKnown RBP10.27□□□□□ -0.77
VPS4A-201ENST00000254950 OR2M2Q96R28 347 aa10.27□□□□□ -0.77
VPS4A-201ENST00000254950 GPR35Q9HC97 309 aa10.27□□□□□ -0.77
VPS4A-201ENST00000254950 ZNF175Q9Y473 711 aa10.27□□□□□ -0.77
VPS4A-201ENST00000254950 IGLV1-36A0A0B4J1U3 117 aa10.27□□□□□ -0.77
VPS4A-201ENST00000254950 NAP1L6A6NFF2 107 aa10.27□□□□□ -0.77
VPS4A-201ENST00000254950 EPXP11678 715 aa10.27□□□□□ -0.77
VPS4A-201ENST00000254950 TNFSF4P23510 183 aa10.27□□□□□ -0.77
VPS4A-201ENST00000254950 VAMP1P23763 118 aa10.27□□□□□ -0.77
VPS4A-201ENST00000254950 GABRR1P24046 479 aa10.27□□□□□ -0.77
VPS4A-201ENST00000254950 PTBP1P26599 531 aaKnown RBP eCLIP10.27□□□□□ -0.77
VPS4A-201ENST00000254950 TMPRSS3P57727 454 aa10.27□□□□□ -0.77
VPS4A-201ENST00000254950 FXYD6P3P58550 94 aa10.27□□□□□ -0.77
VPS4A-201ENST00000254950 BCL2A1Q16548 175 aa10.27□□□□□ -0.77
VPS4A-201ENST00000254950 GLIPR1L1Q6UWM5 242 aa10.27□□□□□ -0.77
VPS4A-201ENST00000254950 PIP4P1Q86T03 277 aa10.27□□□□□ -0.77
VPS4A-201ENST00000254950 DERL3Q96Q80 235 aa10.27□□□□□ -0.77
VPS4A-201ENST00000254950 C7orf50Q9BRJ6 194 aaKnown RBP10.27□□□□□ -0.77
VPS4A-201ENST00000254950 GINS4Q9BRT9 223 aa10.27□□□□□ -0.77
VPS4A-201ENST00000254950 BEX2Q9BXY8 128 aa10.27□□□□□ -0.77
VPS4A-201ENST00000254950 BCL2L14Q9BZR8 327 aa10.27□□□□□ -0.77
VPS4A-201ENST00000254950 RGCCQ9H4X1 137 aa10.27□□□□□ -0.77
VPS4A-201ENST00000254950 BEX1Q9HBH7 125 aa10.27□□□□□ -0.77
VPS4A-201ENST00000254950 GPR173Q9NS66 373 aa10.27□□□□□ -0.77
VPS4A-201ENST00000254950 UGT2A1Q9Y4X1 527 aa10.27□□□□□ -0.77
VPS4A-201ENST00000254950 A0A0G2JMM0 328 aa10.26□□□□□ -0.77
VPS4A-201ENST00000254950 A0A1W2PPB8 328 aa10.26□□□□□ -0.77
VPS4A-201ENST00000254950 A0A1W2PRS3 328 aa10.26□□□□□ -0.77
VPS4A-201ENST00000254950 KIR3DP1A8MWS1 328 aa10.26□□□□□ -0.77
VPS4A-201ENST00000254950 NPIPB7O75200 414 aa10.26□□□□□ -0.77
VPS4A-201ENST00000254950 CSF1P09603 554 aa10.26□□□□□ -0.77
VPS4A-201ENST00000254950 INSL4Q14641 139 aa10.26□□□□□ -0.77
VPS4A-201ENST00000254950 SFRP4Q6FHJ7 346 aaPredicted RBP10.26□□□□□ -0.77
VPS4A-201ENST00000254950 BHLHE23Q8NDY6 225 aa10.26□□□□□ -0.77
VPS4A-201ENST00000254950 RNF133Q8WVZ7 376 aa10.26□□□□□ -0.77
VPS4A-201ENST00000254950 APOBEC3DQ96AK3 386 aaPredicted RBP10.26□□□□□ -0.77
VPS4A-201ENST00000254950 DUSP13Q9UII6 198 aa10.26□□□□□ -0.77
VPS4A-201ENST00000254950 FBXL3Q9UKT7 428 aa10.26□□□□□ -0.77
VPS4A-201ENST00000254950 LSM2Q9Y333 95 aaKnown RBP10.26□□□□□ -0.77
VPS4A-201ENST00000254950 RAB3DO95716 219 aa10.26□□□□□ -0.77
VPS4A-201ENST00000254950 CRYAAP02489 173 aa10.26□□□□□ -0.77
VPS4A-201ENST00000254950 AMY2AP04746 511 aa10.26□□□□□ -0.77
VPS4A-201ENST00000254950 PATE4P0C8F1 98 aa10.26□□□□□ -0.77
VPS4A-201ENST00000254950 PGA4P0DJD7 388 aa10.26□□□□□ -0.77
VPS4A-201ENST00000254950 PGA3P0DJD8 388 aa10.26□□□□□ -0.77
VPS4A-201ENST00000254950 TMIGD3P0DMS9 266 aaPredicted RBP10.26□□□□□ -0.77
VPS4A-201ENST00000254950 VEGFCP49767 419 aa10.26□□□□□ -0.77
VPS4A-201ENST00000254950 TNFSF10P50591 281 aa10.26□□□□□ -0.77
VPS4A-201ENST00000254950 TSPO2Q5TGU0 170 aa10.26□□□□□ -0.77
VPS4A-201ENST00000254950 CCDC36Q8IYA8 594 aa10.26□□□□□ -0.77
VPS4A-201ENST00000254950 PP6455Q8WZ26 134 aa10.26□□□□□ -0.77
VPS4A-201ENST00000254950 NMNAT2Q9BZQ4 307 aa10.26□□□□□ -0.77
VPS4A-201ENST00000254950 CLEC4MQ9H2X3 399 aaPredicted RBP10.26□□□□□ -0.77
VPS4A-201ENST00000254950 TBCCD1Q9NVR7 557 aa10.26□□□□□ -0.77
VPS4A-201ENST00000254950 CACNG2Q9Y698 323 aa10.26□□□□□ -0.77
VPS4A-201ENST00000254950 OR4C45A6NMZ5 311 aa10.26□□□□□ -0.77
VPS4A-201ENST00000254950 ZNF780AO75290 641 aaPredicted RBP10.26□□□□□ -0.77
VPS4A-201ENST00000254950 BPNT1O95861 308 aa10.26□□□□□ -0.77
VPS4A-201ENST00000254950 IGHMP01871 453 aa10.26□□□□□ -0.77
VPS4A-201ENST00000254950 CST2P09228 141 aa10.26□□□□□ -0.77
VPS4A-201ENST00000254950 H2AFB2P0C5Z0 115 aa10.26□□□□□ -0.77
VPS4A-201ENST00000254950 CPT2P23786 658 aa10.26□□□□□ -0.77
VPS4A-201ENST00000254950 MST1P26927 711 aa10.26□□□□□ -0.77
VPS4A-201ENST00000254950 CBX5P45973 191 aa10.26□□□□□ -0.77
VPS4A-201ENST00000254950 RBP2P50120 134 aa10.26□□□□□ -0.77
VPS4A-201ENST00000254950 TCF15Q12870 199 aa10.26□□□□□ -0.77
VPS4A-201ENST00000254950 RTL6Q6ICC9 239 aa10.26□□□□□ -0.77
VPS4A-201ENST00000254950 CISD2Q8N5K1 135 aaKnown RBP10.26□□□□□ -0.77
VPS4A-201ENST00000254950 TMEM38BQ9NVV0 291 aa10.26□□□□□ -0.77
VPS4A-201ENST00000254950 ZNF391Q9UJN7 358 aa10.26□□□□□ -0.77
VPS4A-201ENST00000254950 FOXJ3Q9UPW0 622 aa10.26□□□□□ -0.77
VPS4A-201ENST00000254950 C14orf166Q9Y224 244 aaKnown RBP10.26□□□□□ -0.77
VPS4A-201ENST00000254950 ZNF736B4DX44 427 aaPredicted RBP10.26□□□□□ -0.77
VPS4A-201ENST00000254950 SMAD9O15198 467 aaKnown RBP10.26□□□□□ -0.77
VPS4A-201ENST00000254950 UPK3AO75631 287 aa10.26□□□□□ -0.77
VPS4A-201ENST00000254950 ELK1P19419 428 aa10.26□□□□□ -0.77
VPS4A-201ENST00000254950 BCAP31P51572 246 aa10.26□□□□□ -0.77
VPS4A-201ENST00000254950 ZNF565Q8N9K5 539 aa10.26□□□□□ -0.77
VPS4A-201ENST00000254950 OR5T2Q8NGG2 359 aa10.26□□□□□ -0.77
VPS4A-201ENST00000254950 OR5H2Q8NGV7 314 aa10.26□□□□□ -0.77
VPS4A-201ENST00000254950 GMPPAQ96IJ6 420 aaPredicted RBP10.26□□□□□ -0.77
VPS4A-201ENST00000254950 SELENOIQ9C0D9 397 aa10.26□□□□□ -0.77
VPS4A-201ENST00000254950 RHBDD3Q9Y3P4 386 aa10.26□□□□□ -0.77
VPS4A-201ENST00000254950 DNAJC13O75165 2243 aa10.25□□□□□ -0.77
VPS4A-201ENST00000254950 A0A1B0GW55 424 aa10.25□□□□□ -0.77
VPS4A-201ENST00000254950 EFSO43281 561 aa10.25□□□□□ -0.77
VPS4A-201ENST00000254950 SULT1B1O43704 296 aa10.25□□□□□ -0.77
VPS4A-201ENST00000254950 DUX4L2P0CJ85 424 aa10.25□□□□□ -0.77
VPS4A-201ENST00000254950 DUX4L3P0CJ86 424 aa10.25□□□□□ -0.77
VPS4A-201ENST00000254950 DUX4L4P0CJ87 422 aa10.25□□□□□ -0.77
VPS4A-201ENST00000254950 DUX4L5P0CJ88 424 aa10.25□□□□□ -0.77
VPS4A-201ENST00000254950 DUX4L6P0CJ89 424 aa10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms