RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 C4orf19Q8IY42 314 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 THAP4Q8WY91 577 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 MRPL16Q9NX20 251 aaKnown RBP3.23□□□□□ -1.89
SCN1A-221ENST00000641996 CD207Q9UJ71 328 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 RCE1Q9Y256 329 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 A0A1W2PPM1 405 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 KITLGP21583 273 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 DUTP33316 252 aaKnown RBP3.23□□□□□ -1.89
SCN1A-221ENST00000641996 PSMA6P60900 246 aaKnown RBP3.23□□□□□ -1.89
SCN1A-221ENST00000641996 GLCCI1Q86VQ1 547 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 FRZBQ92765 325 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 KISS1RQ969F8 398 aaPredicted RBP3.23□□□□□ -1.89
SCN1A-221ENST00000641996 TOX2Q96NM4 488 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 MIXL1Q9H2W2 232 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 ZNF442Q9H7R0 627 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 C20orf141Q9NUB4 165 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 MUTYHQ9UIF7 546 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 ZNF391Q9UJN7 358 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 GOLGA3Q08378 1498 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 LRRIQ1Q96JM4 1722 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 GLOD5A6NK44 160 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 ROM1Q03395 351 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 PRTGQ2VWP7 1150 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 PGGHGQ32M88 737 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 RABL3Q5HYI8 236 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 MEIG1Q5JSS6 88 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 TMEM71Q6P5X7 295 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 ZNF474Q6S9Z5 364 aaPredicted RBP3.23□□□□□ -1.89
SCN1A-221ENST00000641996 KLHDC1Q8N7A1 406 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 C10orf35Q96D05 121 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 MS4A10Q96PG2 267 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 RNF167Q9H6Y7 350 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 VPREB3Q9UKI3 123 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 SCML2Q9UQR0 700 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 DNASE2O00115 360 aaPredicted RBP3.23□□□□□ -1.89
SCN1A-221ENST00000641996 BCL2L11O43521 198 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 TMEM225BP0DP42 221 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 TAL1P17542 331 aaPredicted RBP3.23□□□□□ -1.89
SCN1A-221ENST00000641996 CNR1P21554 472 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 CD300LGQ6UXG3 332 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 DOLPP1Q86YN1 238 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 OR52R1Q8NGF1 315 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 OR51G2Q8NGK0 314 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 MALSU1Q96EH3 234 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 GUCD1Q96NT3 240 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 SNHG12Q9BXW3 62 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 NPIPB5A8MRT5 1133 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 J3KT08 172 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 SNCGO76070 127 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 TSPAN13O95857 204 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 EFEMP2O95967 443 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 SLC35E2BP0CK96 405 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 FABP2P12104 132 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 NFYBP25208 207 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 NTSP30990 170 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 IER3P46695 156 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 GZMKP49863 264 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 CDKN2DP55273 166 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 MLF2Q15773 248 aaPredicted RBP3.23□□□□□ -1.89
SCN1A-221ENST00000641996 TAL2Q16559 108 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 S100A7L2Q5SY68 101 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 NXNL2Q5VZ03 156 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 OR1B1Q8NGR6 318 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 SHKBP1Q8TBC3 707 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 RDH11Q8TC12 318 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 AKIP1Q9NQ31 210 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 A6NDN8 102 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 FAM181BA6NEQ2 426 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 E7EQ34 232 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 SELEP16581 610 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 SRSF4Q08170 494 aaKnown RBP3.23□□□□□ -1.89
SCN1A-221ENST00000641996 SPATA46Q5T0L3 261 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 ZNF648Q5T619 568 aaPredicted RBP3.23□□□□□ -1.89
SCN1A-221ENST00000641996 HBMQ6B0K9 141 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 MOB3BQ86TA1 216 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 STHQ8IWL8 128 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 PARP16Q8N5Y8 322 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 GLMPQ8WWB7 406 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 IMP4Q96G21 291 aaKnown RBP3.23□□□□□ -1.89
SCN1A-221ENST00000641996 VN1R1Q9GZP7 353 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 GOLGA2P5Q9HBQ8 144 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 LIN7CQ9NUP9 197 aaKnown RBP3.23□□□□□ -1.89
SCN1A-221ENST00000641996 TAS2R16Q9NYV7 291 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 F11RQ9Y624 299 aaKnown RBP3.23□□□□□ -1.89
SCN1A-221ENST00000641996 TMEM265A0A087WTH1 108 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 WDR27A2RRH5 827 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 EEF1E1O43324 174 aaKnown RBP3.23□□□□□ -1.89
SCN1A-221ENST00000641996 SERPINE1P05121 402 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 CPMP14384 443 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 GYG1P46976 350 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 CAPN13Q6MZZ7 669 aaPredicted RBP3.23□□□□□ -1.89
SCN1A-221ENST00000641996 FCRLAQ7L513 359 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 CANT1Q8WVQ1 401 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 OSTF1Q92882 214 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 PTX4Q96A99 478 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 MEIS3Q99687 375 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 PPP1R3EQ9H7J1 279 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 HSPB7Q9UBY9 170 aa3.23□□□□□ -1.89
SCN1A-221ENST00000641996 APOBEC3BQ9UH17 382 aaKnown RBP3.23□□□□□ -1.89
SCN1A-221ENST00000641996 TBX21Q9UL17 535 aa3.23□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms