RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 ASPHD2Q6ICH7 369 aa14.77□□□□□ -0.04
CLN3-252ENST00000636907 ZNF774Q6NX45 483 aa14.77□□□□□ -0.04
CLN3-252ENST00000636907 FAM57BQ71RH2 274 aa14.77□□□□□ -0.04
CLN3-252ENST00000636907 PRSS45Q7RTY3 260 aa14.77□□□□□ -0.04
CLN3-252ENST00000636907 SNX29P2Q8IUI4 249 aa14.77□□□□□ -0.04
CLN3-252ENST00000636907 OR13C3Q8NGS6 347 aa14.77□□□□□ -0.04
CLN3-252ENST00000636907 GPR137Q96N19 417 aa14.77□□□□□ -0.04
CLN3-252ENST00000636907 GLRX2Q9NS18 164 aa14.77□□□□□ -0.04
CLN3-252ENST00000636907 ZNF319Q9P2F9 582 aa14.77□□□□□ -0.04
CLN3-252ENST00000636907 V9GYH0 126 aa14.77□□□□□ -0.04
CLN3-252ENST00000636907 SYNGR3O43761 229 aa14.77□□□□□ -0.05
CLN3-252ENST00000636907 LMX1BO60663 402 aa14.77□□□□□ -0.05
CLN3-252ENST00000636907 FARS2O95363 451 aaKnown RBP14.77□□□□□ -0.05
CLN3-252ENST00000636907 MAS1P04201 325 aa14.77□□□□□ -0.05
CLN3-252ENST00000636907 ANXA2P07355 339 aaKnown RBP14.77□□□□□ -0.05
CLN3-252ENST00000636907 OTX1P32242 354 aaPredicted RBP14.77□□□□□ -0.05
CLN3-252ENST00000636907 UCNP55089 124 aa14.77□□□□□ -0.05
CLN3-252ENST00000636907 PSG4Q00888 419 aa14.77□□□□□ -0.05
CLN3-252ENST00000636907 ZNF627Q7L945 461 aa14.77□□□□□ -0.05
CLN3-252ENST00000636907 NAA40Q86UY6 237 aa14.77□□□□□ -0.05
CLN3-252ENST00000636907 AKR7LQ8NHP1 331 aa14.77□□□□□ -0.05
CLN3-252ENST00000636907 DIRAS2Q96HU8 199 aa14.77□□□□□ -0.05
CLN3-252ENST00000636907 OR2H1Q9GZK4 316 aa14.77□□□□□ -0.05
CLN3-252ENST00000636907 HDHD2Q9H0R4 259 aa14.77□□□□□ -0.05
CLN3-252ENST00000636907 ZNF71Q9NQZ8 489 aaPredicted RBP14.77□□□□□ -0.05
CLN3-252ENST00000636907 TIMM10BQ9Y5J6 103 aa14.77□□□□□ -0.05
CLN3-252ENST00000636907 FREM1Q5H8C1 2179 aa14.77□□□□□ -0.05
CLN3-252ENST00000636907 A0A096LPE4 126 aa14.76□□□□□ -0.05
CLN3-252ENST00000636907 A0A1B0GTI1 187 aa14.76□□□□□ -0.05
CLN3-252ENST00000636907 A0A1W2PPZ6 126 aa14.76□□□□□ -0.05
CLN3-252ENST00000636907 PAHP00439 452 aa14.76□□□□□ -0.05
CLN3-252ENST00000636907 CD2P06729 351 aa14.76□□□□□ -0.05
CLN3-252ENST00000636907 DBHP09172 617 aa14.76□□□□□ -0.05
CLN3-252ENST00000636907 MMP7P09237 267 aaPredicted RBP14.76□□□□□ -0.05
CLN3-252ENST00000636907 APEX1P27695 318 aaKnown RBP14.76□□□□□ -0.05
CLN3-252ENST00000636907 OR3A2P47893 321 aa14.76□□□□□ -0.05
CLN3-252ENST00000636907 ID4P47928 161 aa14.76□□□□□ -0.05
CLN3-252ENST00000636907 PCBD1P61457 104 aa14.76□□□□□ -0.05
CLN3-252ENST00000636907 CXADRP78310 365 aa14.76□□□□□ -0.05
CLN3-252ENST00000636907 IFITM3Q01628 133 aa14.76□□□□□ -0.05
CLN3-252ENST00000636907 ACSF3Q4G176 576 aaPredicted RBP14.76□□□□□ -0.05
CLN3-252ENST00000636907 LUZP2Q86TE4 346 aa14.76□□□□□ -0.05
CLN3-252ENST00000636907 GCNT2Q8N0V5 402 aa14.76□□□□□ -0.05
CLN3-252ENST00000636907 C9orf106Q8NAJ2 232 aa14.76□□□□□ -0.05
CLN3-252ENST00000636907 OR1F12Q8NHA8 337 aa14.76□□□□□ -0.05
CLN3-252ENST00000636907 OR51E1Q8TCB6 317 aa14.76□□□□□ -0.05
CLN3-252ENST00000636907 SPTSSAQ969W0 71 aa14.76□□□□□ -0.05
CLN3-252ENST00000636907 WNT5BQ9H1J7 359 aa14.76□□□□□ -0.05
CLN3-252ENST00000636907 ZNF224Q9NZL3 707 aa14.76□□□□□ -0.05
CLN3-252ENST00000636907 MALT1Q9UDY8 824 aa14.76□□□□□ -0.05
CLN3-252ENST00000636907 V9GY05 133 aa14.76□□□□□ -0.05
CLN3-252ENST00000636907 A0A0B4J203 849 aa14.75□□□□□ -0.05
CLN3-252ENST00000636907 C5orf63A6NC05 138 aa14.75□□□□□ -0.05
CLN3-252ENST00000636907 OR6C6A6NF89 314 aa14.75□□□□□ -0.05
CLN3-252ENST00000636907 AHRRA9YTQ3 701 aa14.75□□□□□ -0.05
CLN3-252ENST00000636907 E9PLN8 166 aa14.75□□□□□ -0.05
CLN3-252ENST00000636907 M0R135 149 aa14.75□□□□□ -0.05
CLN3-252ENST00000636907 SYT7O43581 403 aa14.75□□□□□ -0.05
CLN3-252ENST00000636907 CRYGSP22914 178 aa14.75□□□□□ -0.05
CLN3-252ENST00000636907 SLC6A9P48067 706 aa14.75□□□□□ -0.05
CLN3-252ENST00000636907 GUSBP1Q15486 140 aa14.75□□□□□ -0.05
CLN3-252ENST00000636907 ARHGAP21Q5T5U3 1957 aa14.75□□□□□ -0.05
CLN3-252ENST00000636907 FBXW9Q5XUX1 488 aa14.75□□□□□ -0.05
CLN3-252ENST00000636907 ZNF585AQ6P3V2 769 aa14.75□□□□□ -0.05
CLN3-252ENST00000636907 MED12LQ86YW9 2145 aa14.75□□□□□ -0.05
CLN3-252ENST00000636907 DNAAF1Q8NEP3 725 aa14.75□□□□□ -0.05
CLN3-252ENST00000636907 TRMT10AQ8TBZ6 339 aaKnown RBP14.75□□□□□ -0.05
CLN3-252ENST00000636907 WNT2BQ93097 391 aa14.75□□□□□ -0.05
CLN3-252ENST00000636907 ZNF799Q96GE5 643 aa14.75□□□□□ -0.05
CLN3-252ENST00000636907 WACQ9BTA9 647 aa14.75□□□□□ -0.05
CLN3-252ENST00000636907 SLC17A5Q9NRA2 495 aa14.75□□□□□ -0.05
CLN3-252ENST00000636907 A0A1B0GVI7 797 aa14.74□□□□□ -0.05
CLN3-252ENST00000636907 IFITM5A6NNB3 132 aa14.74□□□□□ -0.05
CLN3-252ENST00000636907 SNRPBP14678 240 aaKnown RBP14.74□□□□□ -0.05
CLN3-252ENST00000636907 ECH1Q13011 328 aa14.74□□□□□ -0.05
CLN3-252ENST00000636907 SFRP5Q5T4F7 317 aa14.74□□□□□ -0.05
CLN3-252ENST00000636907 HES5Q5TA89 166 aa14.74□□□□□ -0.05
CLN3-252ENST00000636907 CNIH2Q6PI25 160 aa14.74□□□□□ -0.05
CLN3-252ENST00000636907 FAM180AQ6UWF9 173 aa14.74□□□□□ -0.05
CLN3-252ENST00000636907 OR5H6Q8NGV6 325 aa14.74□□□□□ -0.05
CLN3-252ENST00000636907 PGAM5Q96HS1 289 aa14.74□□□□□ -0.05
CLN3-252ENST00000636907 SDHCQ99643 169 aaPredicted RBP14.74□□□□□ -0.05
CLN3-252ENST00000636907 SOX7Q9BT81 388 aa14.74□□□□□ -0.05
CLN3-252ENST00000636907 ZNF275Q9NSD4 429 aaPredicted RBP14.74□□□□□ -0.05
CLN3-252ENST00000636907 TAS2R4Q9NYW5 299 aa14.74□□□□□ -0.05
CLN3-252ENST00000636907 ABRACLQ9P1F3 81 aa14.74□□□□□ -0.05
CLN3-252ENST00000636907 FOXJ3Q9UPW0 622 aa14.74□□□□□ -0.05
CLN3-252ENST00000636907 ANXA2P2A6NMY6 339 aa14.74□□□□□ -0.05
CLN3-252ENST00000636907 AIPO00170 330 aa14.74□□□□□ -0.05
CLN3-252ENST00000636907 SLC19A2O60779 497 aa14.74□□□□□ -0.05
CLN3-252ENST00000636907 APOC1P02654 83 aa14.74□□□□□ -0.05
CLN3-252ENST00000636907 ITGA5P08648 1049 aa14.74□□□□□ -0.05
CLN3-252ENST00000636907 IGFBP3P17936 291 aaPredicted RBP14.74□□□□□ -0.05
CLN3-252ENST00000636907 ELK1P19419 428 aa14.74□□□□□ -0.05
CLN3-252ENST00000636907 FSTP19883 344 aa14.74□□□□□ -0.05
CLN3-252ENST00000636907 HTR5AP47898 357 aa14.74□□□□□ -0.05
CLN3-252ENST00000636907 ZNF79Q15937 498 aa14.74□□□□□ -0.05
CLN3-252ENST00000636907 KRTAP27-1Q3LI81 207 aa14.74□□□□□ -0.05
CLN3-252ENST00000636907 SLC36A2Q495M3 483 aa14.74□□□□□ -0.05
CLN3-252ENST00000636907 FAM131AQ6UXB0 335 aa14.74□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms