RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 STARP49675 285 aa13.84□□□□□ -0.19
CLN3-251ENST00000636853 SELENOPP49908 381 aa13.84□□□□□ -0.19
CLN3-251ENST00000636853 GLYATL3Q5SZD4 288 aa13.84□□□□□ -0.19
CLN3-251ENST00000636853 GLT8D1Q68CQ7 371 aa13.84□□□□□ -0.19
CLN3-251ENST00000636853 FAM166AQ6J272 317 aa13.84□□□□□ -0.19
CLN3-251ENST00000636853 LUZP2Q86TE4 346 aa13.84□□□□□ -0.19
CLN3-251ENST00000636853 PLEKHA1Q9HB21 404 aa13.84□□□□□ -0.19
CLN3-251ENST00000636853 LRFN1Q9P244 771 aa13.84□□□□□ -0.19
CLN3-251ENST00000636853 KCNN3Q9UGI6 736 aa13.84□□□□□ -0.19
CLN3-251ENST00000636853 SULT1B1O43704 296 aa13.84□□□□□ -0.19
CLN3-251ENST00000636853 CTAG2O75638 210 aa13.84□□□□□ -0.19
CLN3-251ENST00000636853 GLSO94925 669 aaPredicted RBP13.84□□□□□ -0.19
CLN3-251ENST00000636853 TNFSF15O95150 251 aa13.84□□□□□ -0.19
CLN3-251ENST00000636853 VAMP5O95183 116 aa13.84□□□□□ -0.19
CLN3-251ENST00000636853 ANOS1P23352 680 aa13.84□□□□□ -0.19
CLN3-251ENST00000636853 DCTDP32321 178 aa13.84□□□□□ -0.19
CLN3-251ENST00000636853 SCAND1P57086 179 aa13.84□□□□□ -0.19
CLN3-251ENST00000636853 ZNF782Q6ZMW2 699 aaPredicted RBP13.84□□□□□ -0.19
CLN3-251ENST00000636853 ZIC4Q8N9L1 334 aa13.84□□□□□ -0.19
CLN3-251ENST00000636853 SLC25A28Q96A46 364 aa13.84□□□□□ -0.19
CLN3-251ENST00000636853 GPR87Q9BY21 358 aa13.84□□□□□ -0.19
CLN3-251ENST00000636853 PNRC2Q9NPJ4 139 aaKnown RBP13.84□□□□□ -0.19
CLN3-251ENST00000636853 CDV3Q9UKY7 258 aaKnown RBP13.84□□□□□ -0.19
CLN3-251ENST00000636853 LOC100289279A0A1B0GTE1 492 aa13.83□□□□□ -0.2
CLN3-251ENST00000636853 TMEM272A0A1B0GTI8 110 aa13.83□□□□□ -0.2
CLN3-251ENST00000636853 GJE1A6NN92 205 aa13.83□□□□□ -0.2
CLN3-251ENST00000636853 TTLL8A6PVC2 850 aa13.83□□□□□ -0.2
CLN3-251ENST00000636853 TERTO14746 1132 aaKnown RBP13.83□□□□□ -0.2
CLN3-251ENST00000636853 SMAD9O15198 467 aaKnown RBP13.83□□□□□ -0.2
CLN3-251ENST00000636853 XRCC3O43542 346 aa13.83□□□□□ -0.2
CLN3-251ENST00000636853 SYT7O43581 403 aa13.83□□□□□ -0.2
CLN3-251ENST00000636853 GMDSO60547 372 aa13.83□□□□□ -0.2
CLN3-251ENST00000636853 KDM4BO94953 1096 aa13.83□□□□□ -0.2
CLN3-251ENST00000636853 GDF1P27539 372 aa13.83□□□□□ -0.2
CLN3-251ENST00000636853 HTR2CP28335 458 aa13.83□□□□□ -0.2
CLN3-251ENST00000636853 CD96P40200 585 aa13.83□□□□□ -0.2
CLN3-251ENST00000636853 BTG1P62324 171 aa13.83□□□□□ -0.2
CLN3-251ENST00000636853 EIF3IQ13347 325 aaKnown RBP13.83□□□□□ -0.2
CLN3-251ENST00000636853 DYRK1AQ13627 763 aa13.83□□□□□ -0.2
CLN3-251ENST00000636853 POU4F3Q15319 338 aa13.83□□□□□ -0.2
CLN3-251ENST00000636853 KCNMB1Q16558 191 aa13.83□□□□□ -0.2
CLN3-251ENST00000636853 TMEM255AQ5JRV8 349 aa13.83□□□□□ -0.2
CLN3-251ENST00000636853 GGNQ86UU5 652 aa13.83□□□□□ -0.2
CLN3-251ENST00000636853 TMEM123Q8N131 208 aa13.83□□□□□ -0.2
CLN3-251ENST00000636853 JAGN1Q8N5M9 183 aa13.83□□□□□ -0.2
CLN3-251ENST00000636853 TMEM54Q969K7 222 aa13.83□□□□□ -0.2
CLN3-251ENST00000636853 SFXN2Q96NB2 322 aa13.83□□□□□ -0.2
CLN3-251ENST00000636853 ZNF416Q9BWM5 594 aa13.83□□□□□ -0.2
CLN3-251ENST00000636853 ZNF275Q9NSD4 429 aaPredicted RBP13.83□□□□□ -0.2
CLN3-251ENST00000636853 MYEF2Q9P2K5 600 aaKnown RBP13.83□□□□□ -0.2
CLN3-251ENST00000636853 IL17BQ9UHF5 180 aa13.83□□□□□ -0.2
CLN3-251ENST00000636853 A0A0A6YYJ9 748 aa13.83□□□□□ -0.2
CLN3-251ENST00000636853 C21orf140B9A014 251 aa13.83□□□□□ -0.2
CLN3-251ENST00000636853 NOS1APO75052 506 aaPredicted RBP13.83□□□□□ -0.2
CLN3-251ENST00000636853 SUCLG1P53597 346 aaKnown RBP13.83□□□□□ -0.2
CLN3-251ENST00000636853 ZNF121P58317 390 aaPredicted RBP13.83□□□□□ -0.2
CLN3-251ENST00000636853 PSMA6P60900 246 aaKnown RBP13.83□□□□□ -0.2
CLN3-251ENST00000636853 MAB21L1Q13394 359 aa13.83□□□□□ -0.2
CLN3-251ENST00000636853 SFRP4Q6FHJ7 346 aaPredicted RBP13.83□□□□□ -0.2
CLN3-251ENST00000636853 ANKRD16Q6P6B7 361 aa13.83□□□□□ -0.2
CLN3-251ENST00000636853 OR51E1Q8TCB6 317 aa13.83□□□□□ -0.2
CLN3-251ENST00000636853 ADAT3Q96EY9 351 aaPredicted RBP13.83□□□□□ -0.2
CLN3-251ENST00000636853 HYLS1Q96M11 299 aa13.83□□□□□ -0.2
CLN3-251ENST00000636853 GAL3ST1Q99999 423 aa13.83□□□□□ -0.2
CLN3-251ENST00000636853 C7orf50Q9BRJ6 194 aaKnown RBP13.83□□□□□ -0.2
CLN3-251ENST00000636853 HRASLSQ9HDD0 168 aa13.83□□□□□ -0.2
CLN3-251ENST00000636853 MCUBQ9NWR8 336 aa13.83□□□□□ -0.2
CLN3-251ENST00000636853 NUBP2Q9Y5Y2 271 aa13.83□□□□□ -0.2
CLN3-251ENST00000636853 KMT2EQ8IZD2 1858 aa13.82□□□□□ -0.2
CLN3-251ENST00000636853 GNALP38405 381 aa13.82□□□□□ -0.2
CLN3-251ENST00000636853 CARD18P57730 90 aa13.82□□□□□ -0.2
CLN3-251ENST00000636853 RAC3P60763 192 aa13.82□□□□□ -0.2
CLN3-251ENST00000636853 LRRC18Q8N456 261 aa13.82□□□□□ -0.2
CLN3-251ENST00000636853 OR1J2Q8NGS2 313 aa13.82□□□□□ -0.2
CLN3-251ENST00000636853 KCNE4Q8WWG9 221 aa13.82□□□□□ -0.2
CLN3-251ENST00000636853 SIGLEC12Q96PQ1 595 aa13.82□□□□□ -0.2
CLN3-251ENST00000636853 SOX7Q9BT81 388 aa13.82□□□□□ -0.2
CLN3-251ENST00000636853 RBM24Q9BX46 236 aaKnown RBP13.82□□□□□ -0.2
CLN3-251ENST00000636853 ZNF319Q9P2F9 582 aa13.82□□□□□ -0.2
CLN3-251ENST00000636853 AUP1Q9Y679 476 aa13.82□□□□□ -0.2
CLN3-251ENST00000636853 GGT3PA6NGU5 568 aa13.81□□□□□ -0.2
CLN3-251ENST00000636853 ZSCAN5BA6NJL1 495 aa13.81□□□□□ -0.2
CLN3-251ENST00000636853 ACOT7O00154 380 aa13.81□□□□□ -0.2
CLN3-251ENST00000636853 CXCL13O43927 109 aa13.81□□□□□ -0.2
CLN3-251ENST00000636853 CNR1P21554 472 aa13.81□□□□□ -0.2
CLN3-251ENST00000636853 RFC3P40938 356 aa13.81□□□□□ -0.2
CLN3-251ENST00000636853 MNDAP41218 407 aa13.81□□□□□ -0.2
CLN3-251ENST00000636853 GUCA1AP43080 201 aaPredicted RBP13.81□□□□□ -0.2
CLN3-251ENST00000636853 RRAS2P62070 204 aaPredicted RBP13.81□□□□□ -0.2
CLN3-251ENST00000636853 FAAP20Q6NZ36 180 aa13.81□□□□□ -0.2
CLN3-251ENST00000636853 OR8B12Q8NGG6 310 aa13.81□□□□□ -0.2
CLN3-251ENST00000636853 ROBO4Q8WZ75 1007 aa13.81□□□□□ -0.2
CLN3-251ENST00000636853 HES7Q9BYE0 225 aa13.81□□□□□ -0.2
CLN3-251ENST00000636853 ATG5Q9H1Y0 275 aa13.81□□□□□ -0.2
CLN3-251ENST00000636853 NUP50Q9UKX7 468 aa13.81□□□□□ -0.2
CLN3-251ENST00000636853 TRAV18A0A075B6X5 111 aa13.81□□□□□ -0.2
CLN3-251ENST00000636853 A0A1B0GTI1 187 aa13.81□□□□□ -0.2
CLN3-251ENST00000636853 CIB4A0PJX0 185 aa13.81□□□□□ -0.2
CLN3-251ENST00000636853 MEGF11A6BM72 1044 aa13.81□□□□□ -0.2
CLN3-251ENST00000636853 LINC00862A6NCI5 91 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms