RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 SPATC1Q76KD6 591 aa15.29■□□□□ 0.04
CLN3-247ENST00000636351 SHFQ7M4L6 423 aa15.29■□□□□ 0.04
CLN3-247ENST00000636351 DPY19L4Q7Z388 723 aa15.29■□□□□ 0.04
CLN3-247ENST00000636351 TIGD4Q8IY51 512 aa15.29■□□□□ 0.04
CLN3-247ENST00000636351 ZNF101Q8IZC7 436 aa15.29■□□□□ 0.04
CLN3-247ENST00000636351 OR8J1Q8NGP2 316 aa15.29■□□□□ 0.04
CLN3-247ENST00000636351 MRPL24Q96A35 216 aaKnown RBP15.29■□□□□ 0.04
CLN3-247ENST00000636351 MAP6Q96JE9 813 aa15.29■□□□□ 0.04
CLN3-247ENST00000636351 MRPL37Q9BZE1 423 aaKnown RBP15.29■□□□□ 0.04
CLN3-247ENST00000636351 DYNLRB1Q9NP97 96 aa15.29■□□□□ 0.04
CLN3-247ENST00000636351 CENPMQ9NSP4 180 aa15.29■□□□□ 0.04
CLN3-247ENST00000636351 SMPD3Q9NY59 655 aaPredicted RBP15.29■□□□□ 0.04
CLN3-247ENST00000636351 DUSP13Q9UII6 198 aa15.29■□□□□ 0.04
CLN3-247ENST00000636351 GMPPBQ9Y5P6 360 aa15.29■□□□□ 0.04
CLN3-247ENST00000636351 PMF1-BGLAPU3KQ54 211 aa15.29■□□□□ 0.04
CLN3-247ENST00000636351 A0A1W2PPW3 197 aa15.28■□□□□ 0.04
CLN3-247ENST00000636351 F5H5K5 113 aa15.28■□□□□ 0.04
CLN3-247ENST00000636351 PPP1CBP62140 327 aa15.28■□□□□ 0.04
CLN3-247ENST00000636351 EFNB3Q15768 340 aa15.28■□□□□ 0.04
CLN3-247ENST00000636351 TMEM249Q2WGJ8 235 aa15.28■□□□□ 0.04
CLN3-247ENST00000636351 TEX30Q5JUR7 227 aa15.28■□□□□ 0.04
CLN3-247ENST00000636351 NXNL2Q5VZ03 156 aa15.28■□□□□ 0.04
CLN3-247ENST00000636351 CLEC2AQ6UVW9 174 aa15.28■□□□□ 0.04
CLN3-247ENST00000636351 TMEM158Q8WZ71 300 aa15.28■□□□□ 0.04
CLN3-247ENST00000636351 SPTSSAQ969W0 71 aa15.28■□□□□ 0.04
CLN3-247ENST00000636351 SLAMF6Q96DU3 332 aa15.28■□□□□ 0.04
CLN3-247ENST00000636351 HRASLS5Q96KN8 279 aa15.28■□□□□ 0.04
CLN3-247ENST00000636351 DCLRE1CQ96SD1 692 aaKnown RBP15.28■□□□□ 0.04
CLN3-247ENST00000636351 MARCH7Q9H992 704 aa15.28■□□□□ 0.04
CLN3-247ENST00000636351 PNRC2Q9NPJ4 139 aaKnown RBP15.28■□□□□ 0.04
CLN3-247ENST00000636351 C8orf4Q9NR00 106 aa15.28■□□□□ 0.04
CLN3-247ENST00000636351 DNAJC27Q9NZQ0 273 aa15.28■□□□□ 0.04
CLN3-247ENST00000636351 SLC22A31A6NKX4 558 aa15.27■□□□□ 0.04
CLN3-247ENST00000636351 ZNF878C9JN71 531 aa15.27■□□□□ 0.04
CLN3-247ENST00000636351 GCH1P30793 250 aa15.27■□□□□ 0.04
CLN3-247ENST00000636351 SLC6A9P48067 706 aa15.27■□□□□ 0.04
CLN3-247ENST00000636351 RGS6P49758 472 aa15.27■□□□□ 0.04
CLN3-247ENST00000636351 KLF3P57682 345 aaPredicted RBP15.27■□□□□ 0.04
CLN3-247ENST00000636351 PCK2Q16822 640 aa15.27■□□□□ 0.04
CLN3-247ENST00000636351 MSMPQ1L6U9 139 aa15.27■□□□□ 0.04
CLN3-247ENST00000636351 AADACL4Q5VUY2 407 aa15.27■□□□□ 0.04
CLN3-247ENST00000636351 MEPCEQ7L2J0 689 aaKnown RBP15.27■□□□□ 0.04
CLN3-247ENST00000636351 ZNF525Q8N782 197 aa15.27■□□□□ 0.04
CLN3-247ENST00000636351 ZNF555Q8NEP9 628 aa15.27■□□□□ 0.04
CLN3-247ENST00000636351 SYNPRQ8TBG9 265 aa15.27■□□□□ 0.04
CLN3-247ENST00000636351 RDH12Q96NR8 316 aa15.27■□□□□ 0.04
CLN3-247ENST00000636351 CNN2Q99439 309 aaKnown RBP15.27■□□□□ 0.04
CLN3-247ENST00000636351 TEAD3Q99594 435 aa15.27■□□□□ 0.04
CLN3-247ENST00000636351 VCXQ9H320 206 aa15.27■□□□□ 0.04
CLN3-247ENST00000636351 LAMP5Q9UJQ1 280 aa15.27■□□□□ 0.04
CLN3-247ENST00000636351 M0R135 149 aa15.26■□□□□ 0.03
CLN3-247ENST00000636351 PHF1O43189 567 aaPredicted RBP15.26■□□□□ 0.03
CLN3-247ENST00000636351 NGFP01138 241 aa15.26■□□□□ 0.03
CLN3-247ENST00000636351 LYNP07948 512 aa15.26■□□□□ 0.03
CLN3-247ENST00000636351 FAM157CP0CG43 387 aa15.26■□□□□ 0.03
CLN3-247ENST00000636351 TPTEP56180 551 aa15.26■□□□□ 0.03
CLN3-247ENST00000636351 DSCR9P59020 149 aa15.26■□□□□ 0.03
CLN3-247ENST00000636351 NKPD1Q17RQ9 610 aa15.26■□□□□ 0.03
CLN3-247ENST00000636351 SWI5Q1ZZU3 235 aa15.26■□□□□ 0.03
CLN3-247ENST00000636351 MST1LQ2TV78 715 aa15.26■□□□□ 0.03
CLN3-247ENST00000636351 ZNF718Q3SXZ3 478 aa15.26■□□□□ 0.03
CLN3-247ENST00000636351 SLC16A9Q7RTY1 509 aa15.26■□□□□ 0.03
CLN3-247ENST00000636351 LRP11Q86VZ4 500 aa15.26■□□□□ 0.03
CLN3-247ENST00000636351 PACRGLQ8N7B6 248 aa15.26■□□□□ 0.03
CLN3-247ENST00000636351 OR10S1Q8NGN2 331 aa15.26■□□□□ 0.03
CLN3-247ENST00000636351 SLC25A40Q8TBP6 338 aa15.26■□□□□ 0.03
CLN3-247ENST00000636351 ST7LQ8TDW4 575 aa15.26■□□□□ 0.03
CLN3-247ENST00000636351 THEM6Q8WUY1 208 aa15.26■□□□□ 0.03
CLN3-247ENST00000636351 CYGBQ8WWM9 190 aa15.26■□□□□ 0.03
CLN3-247ENST00000636351 ZNF799Q96GE5 643 aa15.26■□□□□ 0.03
CLN3-247ENST00000636351 VRK1Q99986 396 aaPredicted RBP15.26■□□□□ 0.03
CLN3-247ENST00000636351 ABHD6Q9BV23 337 aa15.26■□□□□ 0.03
CLN3-247ENST00000636351 OR2J1Q9GZK6 312 aa15.26■□□□□ 0.03
CLN3-247ENST00000636351 RNPEPL1Q9HAU8 725 aa15.26■□□□□ 0.03
CLN3-247ENST00000636351 DDX28Q9NUL7 540 aaKnown RBP15.26■□□□□ 0.03
CLN3-247ENST00000636351 TBCCD1Q9NVR7 557 aa15.26■□□□□ 0.03
CLN3-247ENST00000636351 NKX1-2Q9UD57 310 aaPredicted RBP15.26■□□□□ 0.03
CLN3-247ENST00000636351 LOC100130705A0A1B0GUX0 176 aa15.25■□□□□ 0.03
CLN3-247ENST00000636351 M0R233 179 aa15.25■□□□□ 0.03
CLN3-247ENST00000636351 CASQ2O14958 399 aaPredicted RBP15.25■□□□□ 0.03
CLN3-247ENST00000636351 CLPTM1O96005 669 aa15.25■□□□□ 0.03
CLN3-247ENST00000636351 HSD11B1P28845 292 aa15.25■□□□□ 0.03
CLN3-247ENST00000636351 ALDH3B1P43353 468 aa15.25■□□□□ 0.03
CLN3-247ENST00000636351 EFNB1P98172 346 aa15.25■□□□□ 0.03
CLN3-247ENST00000636351 SLC34A1Q06495 639 aa15.25■□□□□ 0.03
CLN3-247ENST00000636351 LOXL1Q08397 574 aaPredicted RBP15.25■□□□□ 0.03
CLN3-247ENST00000636351 MAD2L1BPQ15013 274 aaPredicted RBP15.25■□□□□ 0.03
CLN3-247ENST00000636351 ALKBH6Q3KRA9 238 aa15.25■□□□□ 0.03
CLN3-247ENST00000636351 OGFRL1Q5TC84 451 aaPredicted RBP15.25■□□□□ 0.03
CLN3-247ENST00000636351 C1orf174Q8IYL3 243 aa15.25■□□□□ 0.03
CLN3-247ENST00000636351 ZNF454Q8N9F8 522 aa15.25■□□□□ 0.03
CLN3-247ENST00000636351 OTOSQ8NHW6 89 aa15.25■□□□□ 0.03
CLN3-247ENST00000636351 IPCEF1Q8WWN9 437 aaPredicted RBP15.25■□□□□ 0.03
CLN3-247ENST00000636351 RFKQ969G6 155 aa15.25■□□□□ 0.03
CLN3-247ENST00000636351 COG8Q96MW5 612 aa15.25■□□□□ 0.03
CLN3-247ENST00000636351 ZNF582Q96NG8 517 aaPredicted RBP15.25■□□□□ 0.03
CLN3-247ENST00000636351 FAM118AQ9NWS6 357 aa15.25■□□□□ 0.03
CLN3-247ENST00000636351 TAAR3PQ9P1P4 343 aa15.25■□□□□ 0.03
CLN3-247ENST00000636351 MYEF2Q9P2K5 600 aaKnown RBP15.25■□□□□ 0.03
CLN3-247ENST00000636351 FBXO9Q9UK97 447 aaPredicted RBP15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 112.3 ms