RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 RFX4Q33E94 735 aa10.01□□□□□ -0.81
UPF3B-204ENST00000619445 SPATS1Q496A3 300 aa10.01□□□□□ -0.81
UPF3B-204ENST00000619445 AWAT1Q58HT5 328 aa10.01□□□□□ -0.81
UPF3B-204ENST00000619445 OR2T2Q6IF00 324 aa10.01□□□□□ -0.81
UPF3B-204ENST00000619445 RPL13AP3Q6NVV1 102 aa10.01□□□□□ -0.81
UPF3B-204ENST00000619445 SHISA2Q6UWI4 295 aa10.01□□□□□ -0.81
UPF3B-204ENST00000619445 COLCA1Q6ZS62 124 aa10.01□□□□□ -0.81
UPF3B-204ENST00000619445 PTCHD4Q6ZW05 846 aa10.01□□□□□ -0.81
UPF3B-204ENST00000619445 OR11L1Q8NGX0 322 aa10.01□□□□□ -0.81
UPF3B-204ENST00000619445 OR2AJ1Q8NGZ0 328 aa10.01□□□□□ -0.81
UPF3B-204ENST00000619445 FANK1Q8TC84 345 aa10.01□□□□□ -0.81
UPF3B-204ENST00000619445 SLC25A28Q96A46 364 aa10.01□□□□□ -0.81
UPF3B-204ENST00000619445 NEIL1Q96FI4 390 aaPredicted RBP10.01□□□□□ -0.81
UPF3B-204ENST00000619445 C1QTNF5Q9BXJ0 243 aa10.01□□□□□ -0.81
UPF3B-204ENST00000619445 MS4A7Q9GZW8 240 aaPredicted RBP10.01□□□□□ -0.81
UPF3B-204ENST00000619445 POFUT1Q9H488 388 aa10.01□□□□□ -0.81
UPF3B-204ENST00000619445 TRIM36Q9NQ86 728 aa10.01□□□□□ -0.81
UPF3B-204ENST00000619445 MMP26Q9NRE1 261 aa10.01□□□□□ -0.81
UPF3B-204ENST00000619445 PTTG3PQ9NZH4 202 aa10.01□□□□□ -0.81
UPF3B-204ENST00000619445 ADA2Q9NZK5 511 aa10.01□□□□□ -0.81
UPF3B-204ENST00000619445 TMCC3Q9ULS5 477 aa10.01□□□□□ -0.81
UPF3B-204ENST00000619445 B9D1Q9UPM9 204 aa10.01□□□□□ -0.81
UPF3B-204ENST00000619445 LHFPL6Q9Y693 200 aa10.01□□□□□ -0.81
UPF3B-204ENST00000619445 IGLV1-36A0A0B4J1U3 117 aa10.01□□□□□ -0.81
UPF3B-204ENST00000619445 TRAPPC2LH3BP13 241 aa10.01□□□□□ -0.81
UPF3B-204ENST00000619445 WNT2P09544 360 aa10.01□□□□□ -0.81
UPF3B-204ENST00000619445 CDKN2AP42771 156 aaKnown RBP10.01□□□□□ -0.81
UPF3B-204ENST00000619445 TPTEP56180 551 aa10.01□□□□□ -0.81
UPF3B-204ENST00000619445 GNB2P62879 340 aa10.01□□□□□ -0.81
UPF3B-204ENST00000619445 PAX8Q06710 450 aa10.01□□□□□ -0.81
UPF3B-204ENST00000619445 SPRNQ5BIV9 151 aa10.01□□□□□ -0.81
UPF3B-204ENST00000619445 SAMD4BQ5PRF9 694 aaKnown RBP10.01□□□□□ -0.81
UPF3B-204ENST00000619445 LEG1Q6P5S2 330 aa10.01□□□□□ -0.81
UPF3B-204ENST00000619445 C9orf139Q6ZV77 190 aa10.01□□□□□ -0.81
UPF3B-204ENST00000619445 ZNF771Q7L3S4 317 aaPredicted RBP10.01□□□□□ -0.81
UPF3B-204ENST00000619445 TSEN54Q7Z6J9 526 aaKnown RBP10.01□□□□□ -0.81
UPF3B-204ENST00000619445 ZBTB46Q86UZ6 589 aa10.01□□□□□ -0.81
UPF3B-204ENST00000619445 OR5AS1Q8N127 324 aa10.01□□□□□ -0.81
UPF3B-204ENST00000619445 LINC00471Q8N535 108 aa10.01□□□□□ -0.81
UPF3B-204ENST00000619445 SLC26A10Q8NG04 563 aa10.01□□□□□ -0.81
UPF3B-204ENST00000619445 OR8B3Q8NGG8 313 aa10.01□□□□□ -0.81
UPF3B-204ENST00000619445 SLC7A6Q92536 515 aa10.01□□□□□ -0.81
UPF3B-204ENST00000619445 PYURFQ96I23 114 aa10.01□□□□□ -0.81
UPF3B-204ENST00000619445 OR8B2Q96RD0 313 aa10.01□□□□□ -0.81
UPF3B-204ENST00000619445 PITX2Q99697 317 aa10.01□□□□□ -0.81
UPF3B-204ENST00000619445 ATF6BQ99941 703 aa10.01□□□□□ -0.81
UPF3B-204ENST00000619445 ZNF747Q9BV97 191 aa10.01□□□□□ -0.81
UPF3B-204ENST00000619445 NSRP1Q9H0G5 558 aaKnown RBP10.01□□□□□ -0.81
UPF3B-204ENST00000619445 OR52D1Q9H346 318 aa10.01□□□□□ -0.81
UPF3B-204ENST00000619445 TMEM165Q9HC07 324 aa10.01□□□□□ -0.81
UPF3B-204ENST00000619445 ESM1Q9NQ30 184 aa10.01□□□□□ -0.81
UPF3B-204ENST00000619445 DCAF16Q9NXF7 216 aa10.01□□□□□ -0.81
UPF3B-204ENST00000619445 NDE1Q9NXR1 346 aa10.01□□□□□ -0.81
UPF3B-204ENST00000619445 GMPR2Q9P2T1 348 aaKnown RBP10.01□□□□□ -0.81
UPF3B-204ENST00000619445 PHYHO14832 338 aa10□□□□□ -0.81
UPF3B-204ENST00000619445 OR10H3O60404 316 aa10□□□□□ -0.81
UPF3B-204ENST00000619445 KRT36O76013 467 aa10□□□□□ -0.81
UPF3B-204ENST00000619445 PPP1R3DO95685 299 aa10□□□□□ -0.81
UPF3B-204ENST00000619445 DBHP09172 617 aa10□□□□□ -0.81
UPF3B-204ENST00000619445 HSD17B1P14061 328 aa10□□□□□ -0.81
UPF3B-204ENST00000619445 NPY4RP50391 375 aa10□□□□□ -0.81
UPF3B-204ENST00000619445 RAD23AP54725 363 aa10□□□□□ -0.81
UPF3B-204ENST00000619445 FXYD6P3P58550 94 aa10□□□□□ -0.81
UPF3B-204ENST00000619445 IL13RA1P78552 427 aa10□□□□□ -0.81
UPF3B-204ENST00000619445 SPIBQ01892 262 aa10□□□□□ -0.81
UPF3B-204ENST00000619445 MZT1Q08AG7 82 aa10□□□□□ -0.81
UPF3B-204ENST00000619445 BAMBIQ13145 260 aa10□□□□□ -0.81
UPF3B-204ENST00000619445 HLXQ14774 488 aaPredicted RBP10□□□□□ -0.81
UPF3B-204ENST00000619445 SEC23BQ15437 767 aa10□□□□□ -0.81
UPF3B-204ENST00000619445 KLBQ86Z14 1044 aa10□□□□□ -0.81
UPF3B-204ENST00000619445 SIGLECL1Q8N7X8 197 aa10□□□□□ -0.81
UPF3B-204ENST00000619445 PLPP7Q8NBV4 271 aa10□□□□□ -0.81
UPF3B-204ENST00000619445 OR10AD1Q8NGE0 317 aa10□□□□□ -0.81
UPF3B-204ENST00000619445 OR52L1Q8NGH7 329 aa10□□□□□ -0.81
UPF3B-204ENST00000619445 OR52E2Q8NGJ4 325 aa10□□□□□ -0.81
UPF3B-204ENST00000619445 OR4C15Q8NGM1 316 aa10□□□□□ -0.81
UPF3B-204ENST00000619445 OR52J3Q8NH60 311 aa10□□□□□ -0.81
UPF3B-204ENST00000619445 Q8TCH9 128 aa10□□□□□ -0.81
UPF3B-204ENST00000619445 RAB40AQ8WXH6 277 aa10□□□□□ -0.81
UPF3B-204ENST00000619445 C22orf15Q8WYQ4 148 aa10□□□□□ -0.81
UPF3B-204ENST00000619445 SPTSSAQ969W0 71 aa10□□□□□ -0.81
UPF3B-204ENST00000619445 UPRTQ96BW1 309 aa10□□□□□ -0.81
UPF3B-204ENST00000619445 FUZQ9BT04 418 aa10□□□□□ -0.81
UPF3B-204ENST00000619445 IFT27Q9BW83 186 aa10□□□□□ -0.81
UPF3B-204ENST00000619445 MYLK2Q9H1R3 596 aa10□□□□□ -0.81
UPF3B-204ENST00000619445 OPA3Q9H6K4 179 aa10□□□□□ -0.81
UPF3B-204ENST00000619445 SRA1Q9HD15 236 aaKnown RBP10□□□□□ -0.81
UPF3B-204ENST00000619445 KIF17Q9P2E2 1029 aa10□□□□□ -0.81
UPF3B-204ENST00000619445 ZNF69Q9UC07 566 aa10□□□□□ -0.81
UPF3B-204ENST00000619445 CYB5R1Q9UHQ9 305 aa10□□□□□ -0.81
UPF3B-204ENST00000619445 PPIAL4AQ9Y536 164 aa10□□□□□ -0.81
UPF3B-204ENST00000619445 IGHV2-70DA0A0C4DH43 119 aa9.99□□□□□ -0.81
UPF3B-204ENST00000619445 POM121CA8CG34 1229 aa9.99□□□□□ -0.81
UPF3B-204ENST00000619445 NDUFA2O43678 99 aa9.99□□□□□ -0.81
UPF3B-204ENST00000619445 HLA-DQA2P01906 255 aa9.99□□□□□ -0.81
UPF3B-204ENST00000619445 LCATP04180 440 aa9.99□□□□□ -0.81
UPF3B-204ENST00000619445 FABP3P05413 133 aa9.99□□□□□ -0.81
UPF3B-204ENST00000619445 RNASE1P07998 156 aaKnown RBP9.99□□□□□ -0.81
UPF3B-204ENST00000619445 ACSM4P0C7M7 580 aa9.99□□□□□ -0.81
UPF3B-204ENST00000619445 ZNF823P16415 610 aa9.99□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms