RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 CPEB4Q17RY0 729 aaKnown RBP eCLIP12.96□□□□□ -0.33
SHROOM1-208ENST00000617339 BEST3Q8N1M1 668 aa12.96□□□□□ -0.33
SHROOM1-208ENST00000617339 PAQR8Q8TEZ7 354 aa12.96□□□□□ -0.33
SHROOM1-208ENST00000617339 SPACA5Q96QH8 159 aa12.96□□□□□ -0.33
SHROOM1-208ENST00000617339 FAM86C1Q9NVL1 165 aa12.96□□□□□ -0.33
SHROOM1-208ENST00000617339 FRRS1LQ9P0K9 344 aa12.96□□□□□ -0.33
SHROOM1-208ENST00000617339 PCDHB10Q9UN67 800 aa12.96□□□□□ -0.33
SHROOM1-208ENST00000617339 IGHV5-10-1A0A0J9YXX1 117 aa12.96□□□□□ -0.33
SHROOM1-208ENST00000617339 ANKRD20A5PA0PJZ0 165 aa12.96□□□□□ -0.33
SHROOM1-208ENST00000617339 MPTX1A8MV57 137 aa12.96□□□□□ -0.33
SHROOM1-208ENST00000617339 NPIPA5E9PKD4 350 aa12.96□□□□□ -0.33
SHROOM1-208ENST00000617339 CRYBA1P05813 215 aa12.96□□□□□ -0.33
SHROOM1-208ENST00000617339 CNR1P21554 472 aa12.96□□□□□ -0.33
SHROOM1-208ENST00000617339 IGLV3-21P80748 117 aaPredicted RBP12.96□□□□□ -0.33
SHROOM1-208ENST00000617339 EXOSC6Q5RKV6 272 aaKnown RBP12.96□□□□□ -0.33
SHROOM1-208ENST00000617339 LINC00696Q6ZRV3 163 aa12.96□□□□□ -0.33
SHROOM1-208ENST00000617339 MAMDC2Q7Z304 686 aaPredicted RBP12.96□□□□□ -0.33
SHROOM1-208ENST00000617339 OR2W3Q7Z3T1 314 aa12.96□□□□□ -0.33
SHROOM1-208ENST00000617339 INTS14Q96SY0 518 aa12.96□□□□□ -0.33
SHROOM1-208ENST00000617339 PTDSS2Q9BVG9 487 aa12.96□□□□□ -0.33
SHROOM1-208ENST00000617339 TMPRSS13Q9BYE2 586 aa12.96□□□□□ -0.33
SHROOM1-208ENST00000617339 SLC19A3Q9BZV2 496 aa12.96□□□□□ -0.33
SHROOM1-208ENST00000617339 SDHAF3Q9NRP4 125 aa12.96□□□□□ -0.33
SHROOM1-208ENST00000617339 KLHL13Q9P2N7 655 aa12.96□□□□□ -0.33
SHROOM1-208ENST00000617339 FBXO4Q9UKT5 387 aa12.96□□□□□ -0.33
SHROOM1-208ENST00000617339 NPIPA1Q9UND3 350 aa12.96□□□□□ -0.33
SHROOM1-208ENST00000617339 DSPP15924 2871 aaKnown RBP12.96□□□□□ -0.33
SHROOM1-208ENST00000617339 ZNF705EA8MWA4 302 aaPredicted RBP12.96□□□□□ -0.34
SHROOM1-208ENST00000617339 SULT1C2O00338 296 aa12.96□□□□□ -0.34
SHROOM1-208ENST00000617339 NDUFS6O75380 124 aaKnown RBP12.96□□□□□ -0.34
SHROOM1-208ENST00000617339 ZNF823P16415 610 aa12.96□□□□□ -0.34
SHROOM1-208ENST00000617339 CDAP32320 146 aa12.96□□□□□ -0.34
SHROOM1-208ENST00000617339 TAS2R20P59543 309 aa12.96□□□□□ -0.34
SHROOM1-208ENST00000617339 BAIAP2L2Q6UXY1 529 aa12.96□□□□□ -0.34
SHROOM1-208ENST00000617339 LINC00114Q6XXX2 140 aa12.96□□□□□ -0.34
SHROOM1-208ENST00000617339 ZC3HAV1Q7Z2W4 902 aaKnown RBP12.96□□□□□ -0.34
SHROOM1-208ENST00000617339 SFT2D1Q8WV19 159 aa12.96□□□□□ -0.34
SHROOM1-208ENST00000617339 GNRHR2Q96P88 292 aa12.96□□□□□ -0.34
SHROOM1-208ENST00000617339 ELL3Q9HB65 397 aaPredicted RBP12.96□□□□□ -0.34
SHROOM1-208ENST00000617339 ICAM5Q9UMF0 924 aa12.96□□□□□ -0.34
SHROOM1-208ENST00000617339 FOXJ3Q9UPW0 622 aa12.96□□□□□ -0.34
SHROOM1-208ENST00000617339 TRAV8-7A0A075B6U6 113 aa12.95□□□□□ -0.34
SHROOM1-208ENST00000617339 NSG1A0A0A6YYJ2 146 aa12.95□□□□□ -0.34
SHROOM1-208ENST00000617339 TMEM272A0A1B0GTI8 110 aa12.95□□□□□ -0.34
SHROOM1-208ENST00000617339 IFITM5A6NNB3 132 aa12.95□□□□□ -0.34
SHROOM1-208ENST00000617339 HMSDA8MTL9 139 aa12.95□□□□□ -0.34
SHROOM1-208ENST00000617339 BDKRB2P30411 391 aa12.95□□□□□ -0.34
SHROOM1-208ENST00000617339 GNALP38405 381 aa12.95□□□□□ -0.34
SHROOM1-208ENST00000617339 SPOCK1Q08629 439 aa12.95□□□□□ -0.34
SHROOM1-208ENST00000617339 EIF2B1Q14232 305 aaKnown RBP12.95□□□□□ -0.34
SHROOM1-208ENST00000617339 LINC01590Q5TEZ4 76 aa12.95□□□□□ -0.34
SHROOM1-208ENST00000617339 MAMSTRQ6ZN01 415 aa12.95□□□□□ -0.34
SHROOM1-208ENST00000617339 OR51D1Q8NGF3 324 aa12.95□□□□□ -0.34
SHROOM1-208ENST00000617339 OR14A16Q8NHC5 309 aa12.95□□□□□ -0.34
SHROOM1-208ENST00000617339 FAM46BQ96A09 425 aa12.95□□□□□ -0.34
SHROOM1-208ENST00000617339 STRADBQ9C0K7 418 aa12.95□□□□□ -0.34
SHROOM1-208ENST00000617339 CGGBP1Q9UFW8 167 aaPredicted RBP12.95□□□□□ -0.34
SHROOM1-208ENST00000617339 OR5V1Q9UGF6 321 aa12.95□□□□□ -0.34
SHROOM1-208ENST00000617339 B9D1Q9UPM9 204 aa12.95□□□□□ -0.34
SHROOM1-208ENST00000617339 MMACHCQ9Y4U1 282 aa12.95□□□□□ -0.34
SHROOM1-208ENST00000617339 RBBP9O75884 186 aa12.95□□□□□ -0.34
SHROOM1-208ENST00000617339 ACTA2P62736 377 aa12.95□□□□□ -0.34
SHROOM1-208ENST00000617339 ACTG2P63267 376 aa12.95□□□□□ -0.34
SHROOM1-208ENST00000617339 FOXF1Q12946 379 aa12.95□□□□□ -0.34
SHROOM1-208ENST00000617339 CSRP2Q16527 193 aa12.95□□□□□ -0.34
SHROOM1-208ENST00000617339 SPAG16Q8N0X2 631 aa12.95□□□□□ -0.34
SHROOM1-208ENST00000617339 GFI1Q99684 422 aa12.95□□□□□ -0.34
SHROOM1-208ENST00000617339 VRK1Q99986 396 aaPredicted RBP12.95□□□□□ -0.34
SHROOM1-208ENST00000617339 F5H0A9 414 aaPredicted RBP12.95□□□□□ -0.34
SHROOM1-208ENST00000617339 FADS1O60427 444 aa12.95□□□□□ -0.34
SHROOM1-208ENST00000617339 MPGP29372 298 aa12.95□□□□□ -0.34
SHROOM1-208ENST00000617339 AKR1C3P42330 323 aa12.95□□□□□ -0.34
SHROOM1-208ENST00000617339 SRSF3P84103 164 aaKnown RBP12.95□□□□□ -0.34
SHROOM1-208ENST00000617339 RBM39Q14498 530 aaKnown RBP12.95□□□□□ -0.34
SHROOM1-208ENST00000617339 ELFN2Q5R3F8 820 aa12.95□□□□□ -0.34
SHROOM1-208ENST00000617339 H3F3CQ6NXT2 135 aa12.95□□□□□ -0.34
SHROOM1-208ENST00000617339 LRRTM1Q86UE6 522 aa12.95□□□□□ -0.34
SHROOM1-208ENST00000617339 JAGN1Q8N5M9 183 aa12.95□□□□□ -0.34
SHROOM1-208ENST00000617339 SLC25A32Q9H2D1 315 aa12.95□□□□□ -0.34
SHROOM1-208ENST00000617339 ZNF160Q9HCG1 818 aa12.95□□□□□ -0.34
SHROOM1-208ENST00000617339 ZNF281Q9Y2X9 895 aa12.95□□□□□ -0.34
SHROOM1-208ENST00000617339 EMC9Q9Y3B6 208 aa12.95□□□□□ -0.34
SHROOM1-208ENST00000617339 PMS2P1A4D2B8 440 aa12.94□□□□□ -0.34
SHROOM1-208ENST00000617339 TTLL8A6PVC2 850 aa12.94□□□□□ -0.34
SHROOM1-208ENST00000617339 ZNF254O75437 659 aa12.94□□□□□ -0.34
SHROOM1-208ENST00000617339 TMEM176BQ3YBM2 270 aaPredicted RBP12.94□□□□□ -0.34
SHROOM1-208ENST00000617339 RPL22L1Q6P5R6 122 aaKnown RBP12.94□□□□□ -0.34
SHROOM1-208ENST00000617339 OR6N1Q8NGY5 312 aa12.94□□□□□ -0.34
SHROOM1-208ENST00000617339 SLC41A2Q96JW4 573 aa12.94□□□□□ -0.34
SHROOM1-208ENST00000617339 PLEKHA6Q9Y2H5 1048 aa12.94□□□□□ -0.34
SHROOM1-208ENST00000617339 TRAV1-2A0A0B4J238 106 aa12.94□□□□□ -0.34
SHROOM1-208ENST00000617339 OR14I1A6ND48 311 aa12.94□□□□□ -0.34
SHROOM1-208ENST00000617339 SNRPGP15A8MWD9 76 aa12.94□□□□□ -0.34
SHROOM1-208ENST00000617339 ZNF879B4DU55 563 aa12.94□□□□□ -0.34
SHROOM1-208ENST00000617339 ACOT7O00154 380 aa12.94□□□□□ -0.34
SHROOM1-208ENST00000617339 SSX5O60225 188 aa12.94□□□□□ -0.34
SHROOM1-208ENST00000617339 ACAA1P09110 424 aaPredicted RBP12.94□□□□□ -0.34
SHROOM1-208ENST00000617339 NPBWR1P48145 328 aa12.94□□□□□ -0.34
SHROOM1-208ENST00000617339 PDZK1IP1Q13113 114 aa12.94□□□□□ -0.34
SHROOM1-208ENST00000617339 COX15Q7KZN9 410 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms