RNA–Protein interactions for RNA: ENST00000614678.1

CPNE3-208, Transcript of copine 3, humanhuman

TSL 1 (best)

Gene CPNE3, Length 4,201 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-208ENST00000614678 SHQ1Q6PI26 577 aaKnown RBP4.83□□□□□ -1.64
CPNE3-208ENST00000614678 TIGD4Q8IY51 512 aa4.83□□□□□ -1.64
CPNE3-208ENST00000614678 TCEANCQ8N8B7 351 aa4.83□□□□□ -1.64
CPNE3-208ENST00000614678 RACGAP1Q9H0H5 632 aa4.83□□□□□ -1.64
CPNE3-208ENST00000614678 METTL17Q9H7H0 456 aaPredicted RBP4.83□□□□□ -1.64
CPNE3-208ENST00000614678 YAE1D1Q9NRH1 226 aa4.83□□□□□ -1.64
CPNE3-208ENST00000614678 A0A1B0GW55 424 aa4.83□□□□□ -1.64
CPNE3-208ENST00000614678 CCDC182A6NF36 153 aa4.83□□□□□ -1.64
CPNE3-208ENST00000614678 C12orf71A8MTZ7 269 aa4.83□□□□□ -1.64
CPNE3-208ENST00000614678 G3V2T6 193 aa4.83□□□□□ -1.64
CPNE3-208ENST00000614678 EI24O14681 340 aa4.83□□□□□ -1.64
CPNE3-208ENST00000614678 TLX2O43763 284 aaPredicted RBP4.83□□□□□ -1.64
CPNE3-208ENST00000614678 FCN3O75636 299 aa4.83□□□□□ -1.64
CPNE3-208ENST00000614678 DUX4L2P0CJ85 424 aa4.83□□□□□ -1.64
CPNE3-208ENST00000614678 DUX4L3P0CJ86 424 aa4.83□□□□□ -1.64
CPNE3-208ENST00000614678 DUX4L4P0CJ87 422 aa4.83□□□□□ -1.64
CPNE3-208ENST00000614678 DUX4L5P0CJ88 424 aa4.83□□□□□ -1.64
CPNE3-208ENST00000614678 DUX4L6P0CJ89 424 aa4.83□□□□□ -1.64
CPNE3-208ENST00000614678 DUX4L7P0CJ90 424 aa4.83□□□□□ -1.64
CPNE3-208ENST00000614678 SLC2A5P22732 501 aa4.83□□□□□ -1.64
CPNE3-208ENST00000614678 IGFBP5P24593 272 aa4.83□□□□□ -1.64
CPNE3-208ENST00000614678 SLC6A9P48067 706 aa4.83□□□□□ -1.64
CPNE3-208ENST00000614678 ZNF81P51508 661 aa4.83□□□□□ -1.64
CPNE3-208ENST00000614678 GMFBP60983 142 aa4.83□□□□□ -1.64
CPNE3-208ENST00000614678 ATP6AP1Q15904 470 aa4.83□□□□□ -1.64
CPNE3-208ENST00000614678 ODF4Q2M2E3 257 aa4.83□□□□□ -1.64
CPNE3-208ENST00000614678 SPATS1Q496A3 300 aa4.83□□□□□ -1.64
CPNE3-208ENST00000614678 GLYATL3Q5SZD4 288 aa4.83□□□□□ -1.64
CPNE3-208ENST00000614678 PRAMEF6Q5VXH4 476 aa4.83□□□□□ -1.64
CPNE3-208ENST00000614678 DUX4L9Q6RFH8 374 aaPredicted RBP4.83□□□□□ -1.64
CPNE3-208ENST00000614678 ZNF826PQ6ZT77 177 aa4.83□□□□□ -1.64
CPNE3-208ENST00000614678 TEX47Q8TBZ9 253 aa4.83□□□□□ -1.64
CPNE3-208ENST00000614678 ABHD6Q9BV23 337 aa4.83□□□□□ -1.64
CPNE3-208ENST00000614678 CDADC1Q9BWV3 514 aa4.83□□□□□ -1.64
CPNE3-208ENST00000614678 FGF23Q9GZV9 251 aaPredicted RBP4.83□□□□□ -1.64
CPNE3-208ENST00000614678 MUC13Q9H3R2 512 aa4.83□□□□□ -1.64
CPNE3-208ENST00000614678 AMBNQ9NP70 447 aa4.83□□□□□ -1.64
CPNE3-208ENST00000614678 DUX4Q9UBX2 424 aa4.83□□□□□ -1.64
CPNE3-208ENST00000614678 FKBP7Q9Y680 259 aa4.83□□□□□ -1.64
CPNE3-208ENST00000614678 CENPBD1B2RD01 187 aa4.82□□□□□ -1.64
CPNE3-208ENST00000614678 TPD52L2O43399 206 aaKnown RBP4.82□□□□□ -1.64
CPNE3-208ENST00000614678 CYB5R3P00387 301 aaPredicted RBP4.82□□□□□ -1.64
CPNE3-208ENST00000614678 IGHV3-13P01766 116 aa4.82□□□□□ -1.64
CPNE3-208ENST00000614678 LCATP04180 440 aa4.82□□□□□ -1.64
CPNE3-208ENST00000614678 HEXAP06865 529 aa4.82□□□□□ -1.64
CPNE3-208ENST00000614678 APEHP13798 732 aaKnown RBP4.82□□□□□ -1.64
CPNE3-208ENST00000614678 CRISP1P54107 249 aa4.82□□□□□ -1.64
CPNE3-208ENST00000614678 DLX1P56177 255 aa4.82□□□□□ -1.64
CPNE3-208ENST00000614678 ACTR3P61158 418 aa4.82□□□□□ -1.64
CPNE3-208ENST00000614678 MAB21L1Q13394 359 aa4.82□□□□□ -1.64
CPNE3-208ENST00000614678 APOFQ13790 326 aa4.82□□□□□ -1.64
CPNE3-208ENST00000614678 C3orf36Q3SXR2 165 aa4.82□□□□□ -1.64
CPNE3-208ENST00000614678 NRN1LQ496H8 165 aa4.82□□□□□ -1.64
CPNE3-208ENST00000614678 KDM4DQ6B0I6 523 aa4.82□□□□□ -1.64
CPNE3-208ENST00000614678 SLC27A4Q6P1M0 643 aa4.82□□□□□ -1.64
CPNE3-208ENST00000614678 C1orf229Q6ZS94 237 aaPredicted RBP4.82□□□□□ -1.64
CPNE3-208ENST00000614678 CCDC121Q6ZUS5 278 aa4.82□□□□□ -1.64
CPNE3-208ENST00000614678 CCDC36Q8IYA8 594 aa4.82□□□□□ -1.64
CPNE3-208ENST00000614678 ITLN1Q8WWA0 313 aa4.82□□□□□ -1.64
CPNE3-208ENST00000614678 SLAMF6Q96DU3 332 aa4.82□□□□□ -1.64
CPNE3-208ENST00000614678 ATF6BQ99941 703 aa4.82□□□□□ -1.64
CPNE3-208ENST00000614678 KCNN2Q9H2S1 579 aa4.82□□□□□ -1.64
CPNE3-208ENST00000614678 UFSP2Q9NUQ7 469 aa4.82□□□□□ -1.64
CPNE3-208ENST00000614678 UBAP1Q9NZ09 502 aa4.82□□□□□ -1.64
CPNE3-208ENST00000614678 PPIHO43447 177 aaKnown RBP4.82□□□□□ -1.64
CPNE3-208ENST00000614678 TIMM8AO60220 97 aaPredicted RBP4.82□□□□□ -1.64
CPNE3-208ENST00000614678 PNPP00491 289 aa4.82□□□□□ -1.64
CPNE3-208ENST00000614678 ADRA2CP18825 462 aa4.82□□□□□ -1.64
CPNE3-208ENST00000614678 CRABP1P29762 137 aa4.82□□□□□ -1.64
CPNE3-208ENST00000614678 GSTT1P30711 240 aa4.82□□□□□ -1.64
CPNE3-208ENST00000614678 GUCA1AP43080 201 aaPredicted RBP4.82□□□□□ -1.64
CPNE3-208ENST00000614678 PPOXP50336 477 aa4.82□□□□□ -1.64
CPNE3-208ENST00000614678 LSM6P62312 80 aaKnown RBP4.82□□□□□ -1.64
CPNE3-208ENST00000614678 EIF2B1Q14232 305 aaKnown RBP4.82□□□□□ -1.64
CPNE3-208ENST00000614678 SNAPC1Q16533 368 aa4.82□□□□□ -1.64
CPNE3-208ENST00000614678 KCNMB1Q16558 191 aa4.82□□□□□ -1.64
CPNE3-208ENST00000614678 KRTAP27-1Q3LI81 207 aa4.82□□□□□ -1.64
CPNE3-208ENST00000614678 ALDH16A1Q8IZ83 802 aa4.82□□□□□ -1.64
CPNE3-208ENST00000614678 CLDND2Q8NHS1 167 aa4.82□□□□□ -1.64
CPNE3-208ENST00000614678 UBASH3BQ8TF42 649 aa4.82□□□□□ -1.64
CPNE3-208ENST00000614678 THEM6Q8WUY1 208 aa4.82□□□□□ -1.64
CPNE3-208ENST00000614678 C22orf15Q8WYQ4 148 aa4.82□□□□□ -1.64
CPNE3-208ENST00000614678 LYZL4Q96KX0 146 aa4.82□□□□□ -1.64
CPNE3-208ENST00000614678 RIBC2Q9H4K1 309 aa4.82□□□□□ -1.64
CPNE3-208ENST00000614678 PAPOLBQ9NRJ5 636 aaKnown RBP4.82□□□□□ -1.64
CPNE3-208ENST00000614678 PURGQ9UJV8 347 aaKnown RBP4.82□□□□□ -1.64
CPNE3-208ENST00000614678 LOC100289279A0A1B0GTE1 492 aa4.82□□□□□ -1.64
CPNE3-208ENST00000614678 DLGAP1O14490 977 aa4.82□□□□□ -1.64
CPNE3-208ENST00000614678 LMX1BO60663 402 aa4.82□□□□□ -1.64
CPNE3-208ENST00000614678 CA6P23280 308 aa4.82□□□□□ -1.64
CPNE3-208ENST00000614678 ACKR3P25106 362 aa4.82□□□□□ -1.64
CPNE3-208ENST00000614678 ZFP36P26651 326 aaKnown RBP4.82□□□□□ -1.64
CPNE3-208ENST00000614678 IFNGR2P38484 337 aa4.82□□□□□ -1.64
CPNE3-208ENST00000614678 RAD52P43351 418 aa4.82□□□□□ -1.64
CPNE3-208ENST00000614678 RPS7P62081 194 aaKnown RBP4.82□□□□□ -1.64
CPNE3-208ENST00000614678 EFNB1P98172 346 aa4.82□□□□□ -1.64
CPNE3-208ENST00000614678 PPP2R2BQ00005 443 aa4.82□□□□□ -1.64
CPNE3-208ENST00000614678 MFGE8Q08431 387 aaPredicted RBP4.82□□□□□ -1.64
CPNE3-208ENST00000614678 DOC2BQ14184 412 aa4.82□□□□□ -1.64
CPNE3-208ENST00000614678 FAM205BPQ63HN1 556 aa4.82□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms