RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 F3P13726 295 aa4.53□□□□□ -1.68
VPS13D-213ENST00000613099 RCC1P18754 421 aaPredicted RBP4.53□□□□□ -1.68
VPS13D-213ENST00000613099 CSNK1G2P78368 415 aa4.53□□□□□ -1.68
VPS13D-213ENST00000613099 MMP21Q8N119 569 aa4.53□□□□□ -1.68
VPS13D-213ENST00000613099 DVL3Q92997 716 aaPredicted RBP4.53□□□□□ -1.68
VPS13D-213ENST00000613099 UBL7Q96S82 380 aaPredicted RBP4.53□□□□□ -1.68
VPS13D-213ENST00000613099 MYADMQ96S97 322 aa4.53□□□□□ -1.68
VPS13D-213ENST00000613099 SRA1Q9HD15 236 aaKnown RBP4.53□□□□□ -1.68
VPS13D-213ENST00000613099 HHLA1C9JL84 531 aa4.53□□□□□ -1.68
VPS13D-213ENST00000613099 LINC01387J3KSC0 135 aa4.53□□□□□ -1.68
VPS13D-213ENST00000613099 COCHO43405 550 aa4.53□□□□□ -1.68
VPS13D-213ENST00000613099 DRD2P14416 443 aa4.53□□□□□ -1.68
VPS13D-213ENST00000613099 HIST1H1CP16403 213 aaKnown RBP4.53□□□□□ -1.68
VPS13D-213ENST00000613099 PMCHP20382 165 aa4.53□□□□□ -1.68
VPS13D-213ENST00000613099 XCR1P46094 333 aa4.53□□□□□ -1.68
VPS13D-213ENST00000613099 OR51T1Q8NGJ9 327 aa4.53□□□□□ -1.68
VPS13D-213ENST00000613099 PEX11GQ96HA9 241 aa4.53□□□□□ -1.68
VPS13D-213ENST00000613099 PLEKHA3Q9HB20 300 aa4.53□□□□□ -1.68
VPS13D-213ENST00000613099 GLRX2Q9NS18 164 aa4.53□□□□□ -1.68
VPS13D-213ENST00000613099 DNMT3BQ9UBC3 853 aaKnown RBP4.53□□□□□ -1.68
VPS13D-213ENST00000613099 HSPB8Q9UJY1 196 aa4.53□□□□□ -1.68
VPS13D-213ENST00000613099 RRP8O43159 456 aaKnown RBP4.53□□□□□ -1.68
VPS13D-213ENST00000613099 ZNF749O43361 778 aa4.53□□□□□ -1.68
VPS13D-213ENST00000613099 SEMG1P04279 462 aa4.53□□□□□ -1.68
VPS13D-213ENST00000613099 TACR2P21452 398 aa4.53□□□□□ -1.68
VPS13D-213ENST00000613099 PRSS45Q7RTY3 260 aa4.53□□□□□ -1.68
VPS13D-213ENST00000613099 ZNF563Q8TA94 476 aa4.53□□□□□ -1.68
VPS13D-213ENST00000613099 PINX1Q96BK5 328 aaKnown RBP4.53□□□□□ -1.68
VPS13D-213ENST00000613099 ZFPL1O95159 310 aa4.53□□□□□ -1.68
VPS13D-213ENST00000613099 BAXQ07812 192 aa4.53□□□□□ -1.68
VPS13D-213ENST00000613099 PLPPR5Q32ZL2 321 aa4.53□□□□□ -1.68
VPS13D-213ENST00000613099 DCAF10Q5QP82 559 aa4.53□□□□□ -1.68
VPS13D-213ENST00000613099 EXOSC6Q5RKV6 272 aaKnown RBP4.53□□□□□ -1.68
VPS13D-213ENST00000613099 UBTD2Q8WUN7 234 aa4.53□□□□□ -1.68
VPS13D-213ENST00000613099 PARP12Q9H0J9 701 aaKnown RBP4.53□□□□□ -1.68
VPS13D-213ENST00000613099 KCNK6Q9Y257 313 aa4.53□□□□□ -1.68
VPS13D-213ENST00000613099 TP53BP1Q12888 1972 aaPredicted RBP4.53□□□□□ -1.68
VPS13D-213ENST00000613099 TLCD2A6NGC4 264 aa4.53□□□□□ -1.68
VPS13D-213ENST00000613099 GLIPR1P48060 266 aa4.53□□□□□ -1.68
VPS13D-213ENST00000613099 DHRS2Q13268 280 aa4.53□□□□□ -1.68
VPS13D-213ENST00000613099 C9orf135Q5VTT2 229 aa4.53□□□□□ -1.68
VPS13D-213ENST00000613099 PSRC1Q6PGN9 363 aaPredicted RBP4.53□□□□□ -1.68
VPS13D-213ENST00000613099 SDSLQ96GA7 329 aa4.53□□□□□ -1.68
VPS13D-213ENST00000613099 SLC25A18Q9H1K4 315 aa4.53□□□□□ -1.68
VPS13D-213ENST00000613099 MTFP1Q9UDX5 166 aa4.53□□□□□ -1.68
VPS13D-213ENST00000613099 KMT2EQ8IZD2 1858 aa4.53□□□□□ -1.68
VPS13D-213ENST00000613099 NUDT3O95989 172 aa4.53□□□□□ -1.68
VPS13D-213ENST00000613099 FZD2Q14332 565 aa4.53□□□□□ -1.68
VPS13D-213ENST00000613099 TMEM229BQ8NBD8 167 aa4.53□□□□□ -1.68
VPS13D-213ENST00000613099 CPEB3Q8NE35 698 aaKnown RBP4.53□□□□□ -1.68
VPS13D-213ENST00000613099 OR51A4Q8NGJ6 313 aa4.53□□□□□ -1.68
VPS13D-213ENST00000613099 GMPPAQ96IJ6 420 aaPredicted RBP4.53□□□□□ -1.68
VPS13D-213ENST00000613099 JSRP1Q96MG2 331 aaPredicted RBP4.53□□□□□ -1.68
VPS13D-213ENST00000613099 ABHD1Q96SE0 405 aa4.53□□□□□ -1.68
VPS13D-213ENST00000613099 ATP5SQ99766 215 aa4.53□□□□□ -1.68
VPS13D-213ENST00000613099 CITED2Q99967 270 aaPredicted RBP4.53□□□□□ -1.68
VPS13D-213ENST00000613099 A4GALTQ9NPC4 353 aa4.53□□□□□ -1.68
VPS13D-213ENST00000613099 MRPS2Q9Y399 296 aaKnown RBP4.53□□□□□ -1.68
VPS13D-213ENST00000613099 OR1F1O43749 312 aa4.53□□□□□ -1.68
VPS13D-213ENST00000613099 TBX18O95935 607 aa4.53□□□□□ -1.68
VPS13D-213ENST00000613099 NRASP01111 189 aa4.53□□□□□ -1.68
VPS13D-213ENST00000613099 HRASP01112 189 aa4.53□□□□□ -1.68
VPS13D-213ENST00000613099 KRASP01116 189 aa4.53□□□□□ -1.68
VPS13D-213ENST00000613099 FAM3AP98173 230 aa4.53□□□□□ -1.68
VPS13D-213ENST00000613099 DECR1Q16698 335 aa4.53□□□□□ -1.68
VPS13D-213ENST00000613099 ZNF776Q68DI1 518 aaPredicted RBP4.53□□□□□ -1.68
VPS13D-213ENST00000613099 FCMRO60667 390 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 OR2A4O95047 310 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 FGF5P12034 268 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 C9orf57Q5W0N0 161 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 PSAPL1Q6NUJ1 521 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 MRGPRX2Q96LB1 330 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 MS4A4EQ96PG1 132 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 OR2A7Q96R45 310 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 TMEM106CQ9BVX2 250 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 EGLN3Q9H6Z9 239 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 PLEKHF2Q9H8W4 249 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 LANCL2Q9NS86 450 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 P4HTMQ9NXG6 502 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 DDTLA6NHG4 134 aaPredicted RBP4.52□□□□□ -1.69
VPS13D-213ENST00000613099 F5H5K5 113 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 J3KRW8 73 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 M0QYG6 137 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 TBC1D3HP0C7X1 549 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 ACP5P13686 325 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 TSFMP43897 325 aaKnown RBP4.52□□□□□ -1.69
VPS13D-213ENST00000613099 TMEM19Q96HH6 336 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 PGAM5Q96HS1 289 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 C2orf42Q9NWW7 574 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 NAT8Q9UHE5 227 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 MSRAQ9UJ68 235 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 LOC102724200A0A096LPH7 203 aaPredicted RBP4.52□□□□□ -1.69
VPS13D-213ENST00000613099 LEFTY1O75610 366 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 HLA-DQB1P01920 261 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 HMGA1P17096 107 aaKnown RBP4.52□□□□□ -1.69
VPS13D-213ENST00000613099 AMTP48728 403 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 MORN1Q5T089 497 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 TECPR1Q7Z6L1 1165 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 TRGC2P03986 189 aa4.52□□□□□ -1.69
VPS13D-213ENST00000613099 ARL4DP49703 201 aa4.52□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms