RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 TPTEP56180 551 aa14.38□□□□□ -0.11
TRIM28-215ENST00000601150 LOXL1Q08397 574 aaPredicted RBP14.38□□□□□ -0.11
TRIM28-215ENST00000601150 KLHL12Q53G59 568 aa14.38□□□□□ -0.11
TRIM28-215ENST00000601150 COLCA1Q6ZS62 124 aa14.38□□□□□ -0.11
TRIM28-215ENST00000601150 CXXC5Q7LFL8 322 aaKnown RBP14.38□□□□□ -0.11
TRIM28-215ENST00000601150 ERI1Q8IV48 349 aaKnown RBP14.38□□□□□ -0.11
TRIM28-215ENST00000601150 ZNF540Q8NDQ6 660 aa14.38□□□□□ -0.11
TRIM28-215ENST00000601150 OR6N2Q8NGY6 317 aa14.38□□□□□ -0.11
TRIM28-215ENST00000601150 GTF3AQ92664 365 aaKnown RBP14.38□□□□□ -0.11
TRIM28-215ENST00000601150 HAVCR1Q96D42 359 aa14.38□□□□□ -0.11
TRIM28-215ENST00000601150 CMBLQ96DG6 245 aa14.38□□□□□ -0.11
TRIM28-215ENST00000601150 CIB1Q99828 191 aa14.38□□□□□ -0.11
TRIM28-215ENST00000601150 OSBPL10Q9BXB5 764 aa14.38□□□□□ -0.11
TRIM28-215ENST00000601150 PTTG3PQ9NZH4 202 aa14.38□□□□□ -0.11
TRIM28-215ENST00000601150 ZAR1LA6NP61 321 aa14.37□□□□□ -0.11
TRIM28-215ENST00000601150 M0R135 149 aa14.37□□□□□ -0.11
TRIM28-215ENST00000601150 NCR1O76036 304 aa14.37□□□□□ -0.11
TRIM28-215ENST00000601150 RAC2P15153 192 aa14.37□□□□□ -0.11
TRIM28-215ENST00000601150 KITLGP21583 273 aa14.37□□□□□ -0.11
TRIM28-215ENST00000601150 USF1P22415 310 aaPredicted RBP14.37□□□□□ -0.11
TRIM28-215ENST00000601150 GIFP27352 417 aa14.37□□□□□ -0.11
TRIM28-215ENST00000601150 MRPS11P82912 194 aaKnown RBP14.37□□□□□ -0.11
TRIM28-215ENST00000601150 PPP2R2BQ00005 443 aa14.37□□□□□ -0.11
TRIM28-215ENST00000601150 EIF2B1Q14232 305 aaKnown RBP14.37□□□□□ -0.11
TRIM28-215ENST00000601150 ZMAT1Q5H9K5 638 aa14.37□□□□□ -0.11
TRIM28-215ENST00000601150 SLC35D3Q5M8T2 416 aa14.37□□□□□ -0.11
TRIM28-215ENST00000601150 SLX4IPQ5VYV7 408 aa14.37□□□□□ -0.11
TRIM28-215ENST00000601150 FBXW12Q6X9E4 464 aa14.37□□□□□ -0.11
TRIM28-215ENST00000601150 SHFQ7M4L6 423 aa14.37□□□□□ -0.11
TRIM28-215ENST00000601150 TIGD4Q8IY51 512 aa14.37□□□□□ -0.11
TRIM28-215ENST00000601150 ST7LQ8TDW4 575 aa14.37□□□□□ -0.11
TRIM28-215ENST00000601150 RDH5Q92781 318 aa14.37□□□□□ -0.11
TRIM28-215ENST00000601150 SLAMF6Q96DU3 332 aa14.37□□□□□ -0.11
TRIM28-215ENST00000601150 ZMYND19Q96E35 227 aaPredicted RBP14.37□□□□□ -0.11
TRIM28-215ENST00000601150 ZNF799Q96GE5 643 aa14.37□□□□□ -0.11
TRIM28-215ENST00000601150 RBM4BQ9BQ04 359 aaKnown RBP14.37□□□□□ -0.11
TRIM28-215ENST00000601150 C1QTNF5Q9BXJ0 243 aa14.37□□□□□ -0.11
TRIM28-215ENST00000601150 CENPMQ9NSP4 180 aa14.37□□□□□ -0.11
TRIM28-215ENST00000601150 PURGQ9UJV8 347 aaKnown RBP14.37□□□□□ -0.11
TRIM28-215ENST00000601150 ZANQ9Y493 2812 aa14.37□□□□□ -0.11
TRIM28-215ENST00000601150 ZSCAN5BA6NJL1 495 aa14.36□□□□□ -0.11
TRIM28-215ENST00000601150 ZNF878C9JN71 531 aa14.36□□□□□ -0.11
TRIM28-215ENST00000601150 LYNX1G3V0Z9 82 aa14.36□□□□□ -0.11
TRIM28-215ENST00000601150 TPD52L2O43399 206 aaKnown RBP14.36□□□□□ -0.11
TRIM28-215ENST00000601150 SPRY3O43610 288 aa14.36□□□□□ -0.11
TRIM28-215ENST00000601150 LCATP04180 440 aa14.36□□□□□ -0.11
TRIM28-215ENST00000601150 LYNX1P0DP58 116 aa14.36□□□□□ -0.11
TRIM28-215ENST00000601150 SLC2A5P22732 501 aa14.36□□□□□ -0.11
TRIM28-215ENST00000601150 EPHA2P29317 976 aa14.36□□□□□ -0.11
TRIM28-215ENST00000601150 RPS7P62081 194 aaKnown RBP14.36□□□□□ -0.11
TRIM28-215ENST00000601150 CCL8P80075 99 aa14.36□□□□□ -0.11
TRIM28-215ENST00000601150 TAF13Q15543 124 aa14.36□□□□□ -0.11
TRIM28-215ENST00000601150 TSTQ16762 297 aaKnown RBP14.36□□□□□ -0.11
TRIM28-215ENST00000601150 FAM209AQ5JX71 171 aa14.36□□□□□ -0.11
TRIM28-215ENST00000601150 Q71RC1 249 aaPredicted RBP14.36□□□□□ -0.11
TRIM28-215ENST00000601150 DPY19L4Q7Z388 723 aa14.36□□□□□ -0.11
TRIM28-215ENST00000601150 BBS1Q8NFJ9 593 aa14.36□□□□□ -0.11
TRIM28-215ENST00000601150 DIRC2Q96SL1 478 aa14.36□□□□□ -0.11
TRIM28-215ENST00000601150 COPS4Q9BT78 406 aa14.36□□□□□ -0.11
TRIM28-215ENST00000601150 DECR2Q9NUI1 292 aa14.36□□□□□ -0.11
TRIM28-215ENST00000601150 ZDHHC8Q9ULC8 765 aa14.36□□□□□ -0.11
TRIM28-215ENST00000601150 TANC2Q9HCD6 1990 aa14.35□□□□□ -0.11
TRIM28-215ENST00000601150 PRKYO43930 277 aa14.35□□□□□ -0.11
TRIM28-215ENST00000601150 IGHV1-46P01743 117 aa14.35□□□□□ -0.11
TRIM28-215ENST00000601150 ADH4P08319 380 aa14.35□□□□□ -0.11
TRIM28-215ENST00000601150 ACHEP22303 614 aa14.35□□□□□ -0.11
TRIM28-215ENST00000601150 OTX1P32242 354 aaPredicted RBP14.35□□□□□ -0.11
TRIM28-215ENST00000601150 SLC6A9P48067 706 aa14.35□□□□□ -0.11
TRIM28-215ENST00000601150 MALLQ13021 153 aa14.35□□□□□ -0.11
TRIM28-215ENST00000601150 RIN1Q13671 783 aa14.35□□□□□ -0.11
TRIM28-215ENST00000601150 APOFQ13790 326 aa14.35□□□□□ -0.11
TRIM28-215ENST00000601150 GGTLC2Q14390 218 aa14.35□□□□□ -0.11
TRIM28-215ENST00000601150 HLXQ14774 488 aaPredicted RBP14.35□□□□□ -0.11
TRIM28-215ENST00000601150 C12orf73Q69YU5 71 aa14.35□□□□□ -0.11
TRIM28-215ENST00000601150 DRAM2Q6UX65 266 aa14.35□□□□□ -0.11
TRIM28-215ENST00000601150 NAA40Q86UY6 237 aa14.35□□□□□ -0.11
TRIM28-215ENST00000601150 KCNJ15Q99712 375 aa14.35□□□□□ -0.11
TRIM28-215ENST00000601150 ABHD6Q9BV23 337 aa14.35□□□□□ -0.11
TRIM28-215ENST00000601150 GABARAPL3Q9BY60 117 aa14.35□□□□□ -0.11
TRIM28-215ENST00000601150 BPESC1Q9GZL8 116 aa14.35□□□□□ -0.11
TRIM28-215ENST00000601150 CHODLQ9H9P2 273 aa14.35□□□□□ -0.11
TRIM28-215ENST00000601150 MSL2Q9HCI7 577 aa14.35□□□□□ -0.11
TRIM28-215ENST00000601150 S100A14Q9HCY8 104 aa14.35□□□□□ -0.11
TRIM28-215ENST00000601150 SELENOFO60613 162 aa14.34□□□□□ -0.11
TRIM28-215ENST00000601150 COL8A2P25067 703 aa14.34□□□□□ -0.11
TRIM28-215ENST00000601150 SLC15A1P46059 708 aa14.34□□□□□ -0.11
TRIM28-215ENST00000601150 GRB2P62993 217 aaKnown RBP14.34□□□□□ -0.11
TRIM28-215ENST00000601150 KRTAP1-1Q07627 177 aa14.34□□□□□ -0.11
TRIM28-215ENST00000601150 CDK5R2Q13319 367 aa14.34□□□□□ -0.11
TRIM28-215ENST00000601150 LCN1P1Q5VSP4 162 aa14.34□□□□□ -0.11
TRIM28-215ENST00000601150 SPATC1Q76KD6 591 aa14.34□□□□□ -0.11
TRIM28-215ENST00000601150 TCEANCQ8N8B7 351 aa14.34□□□□□ -0.11
TRIM28-215ENST00000601150 ZNF454Q8N9F8 522 aa14.34□□□□□ -0.11
TRIM28-215ENST00000601150 TMEM163Q8TC26 289 aa14.34□□□□□ -0.11
TRIM28-215ENST00000601150 RNF133Q8WVZ7 376 aa14.34□□□□□ -0.11
TRIM28-215ENST00000601150 YIPF5Q969M3 257 aa14.34□□□□□ -0.11
TRIM28-215ENST00000601150 EGLN1Q9GZT9 426 aa14.34□□□□□ -0.11
TRIM28-215ENST00000601150 TOR3AQ9H497 397 aa14.34□□□□□ -0.11
TRIM28-215ENST00000601150 RIBC2Q9H4K1 309 aa14.34□□□□□ -0.11
TRIM28-215ENST00000601150 SAP30LQ9HAJ7 183 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms